PDB: 224004 resultsInfo pagesStatus searchChemie searchBIRD

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9F1B	Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ... Authors: Yudin, D, Scaiola, A, Ban, N. Deposit date: 2024-04-18 Release date: 2024-08-21 Method: ELECTRON MICROSCOPY (3.01 Å) Cite: NAC guides a ribosomal multienzyme complex for nascent protein processing Nature, 2024
100D	CRYSTAL STRUCTURE OF THE HIGHLY DISTORTED CHIMERIC DECAMER R(C)D(CGGCGCCG)R(G)-SPERMINE COMPLEX-SPERMINE BINDING TO PHOSPHATE ONLY AND MINOR GROOVE TERTIARY BASE-PAIRING Descriptor: DNA/RNA (5'-R(*CP*)-D(*CP*GP*GP*CP*GP*CP*CP*GP*)-R(*G)-3'), SPERMINE Authors: Ban, C, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1994-12-05 Release date: 1995-03-31 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of the highly distorted chimeric decamer r(C)d(CGGCGCCG)r(G).spermine complex--spermine binding to phosphate only and minor groove tertiary base-pairing. Nucleic Acids Res., 22, 1994
101D	REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN Authors: Goodsell, D.S, Kopka, M.L, Dickerson, R.E. Deposit date: 1994-12-14 Release date: 1995-02-27 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation. Biochemistry, 34, 1995
102D	SEQUENCE-DEPENDENT DRUG BINDING TO THE MINOR GROOVE OF DNA: THE CRYSTAL STRUCTURE OF THE DNA DODECAMER D(CGCAAATTTGCG)2 COMPLEXED WITH PROPAMIDINE Descriptor: 1,3-BIS(AMIDINOPHENOXY)PROPANE, DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Nunn, C.M, Neidle, S. Deposit date: 1994-12-15 Release date: 1995-02-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Sequence-dependent drug binding to the minor groove of DNA: crystal structure of the DNA dodecamer d(CGCAAATTTGCG)2 complexed with propamidine. J.Med.Chem., 38, 1995
109D	VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2 Descriptor: 5-(2-IMIDAZOLINYL)-2-[2-(4-HYDROXYPHENYL)-5-BENZIMIDAZOLYL]BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Czarny, A, Boykin, D.W, Wood, A.A, Nunn, C.M, Neidle, S, Zhao, M, Wilson, W.D. Deposit date: 1995-02-15 Release date: 1995-05-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Variability in DNA minor groove width recognised by ligand binding: the crystal structure of a bis-benzimidazole compound bound to the DNA duplex d(CGCGAATTCGCG)2. Nucleic Acids Res., 23, 1995
6XIW	Cryo-EM structure of the sodium leak channel NALCN-FAM155A complex Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Kschonsak, M, Chua, H.C, Noland, C.L, Weidling, C, Clairfeuille, T, Bahlke, O.O, Ameen, A.O, Li, Z.R, Arthur, C.P, Ciferri, C, Pless, S.A, Payandeh, J. Deposit date: 2020-06-22 Release date: 2020-07-29 Last modified: 2020-11-25 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure of the human sodium leak channel NALCN. Nature, 587, 2020
110D	ANTHRACYCLINE-DNA INTERACTIONS AT UNFAVOURABLE BASE BASE-PAIR TRIPLET-BINDING SITES: STRUCTURES OF D(CGGCCG)/DAUNOMYCIN AND D(TGGCCA)/ADRIAMYCIN COMPL Descriptor: DAUNOMYCIN, DNA (5'-D(*CP*GP*GP*CP*CP*G)-3') Authors: Leonard, G.A, Hambley, T.W, McAuley-Hecht, K, Brown, T, Hunter, W.N. Deposit date: 1993-01-21 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Anthracycline-DNA interactions at unfavourable base-pair triplet-binding sites: structures of d(CGGCCG)/daunomycin and d(TGGCCA)/adriamycin complexes. Acta Crystallogr.,Sect.D, 49, 1993
111D	CRYSTAL STRUCTURE AND STABILITY OF A DNA DUPLEX CONTAINING A(ANTI).G(SYN) BASE-PAIRS Descriptor: DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*TP*GP*GP*CP*G)-3') Authors: Brown, T, Leonard, G.A, Booth, E.D, Chambers, J. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal structure and stability of a DNA duplex containing A(anti).G(syn) base-pairs. J.Mol.Biol., 207, 1989
140D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, Kerwin, S.M, Kenyon, G.L, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
142D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
141D	SOLUTION STRUCTURE OF A CONSERVED DNA SEQUENCE FROM THE HIV-1 GENOME: RESTRAINED MOLECULAR DYNAMICS SIMULATION WITH DISTANCE AND TORSION ANGLE RESTRAINTS DERIVED FROM TWO-DIMENSIONAL NMR SPECTRA Descriptor: DNA (5'-D(*AP*GP*CP*TP*TP*GP*CP*CP*TP*TP*GP*AP*G)-3'), DNA (5'-D(*CP*TP*CP*AP*AP*GP*GP*CP*AP*AP*GP*CP*T)-3') Authors: Mujeeb, A, James, T.L. Deposit date: 1993-09-24 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a conserved DNA sequence from the HIV-1 genome: restrained molecular dynamics simulation with distance and torsion angle restraints derived from two-dimensional NMR spectra. Biochemistry, 32, 1993
139D	SOLUTION STRUCTURE OF A PARALLEL-STRANDED G-QUADRUPLEX DNA Descriptor: DNA (5'-D(*TP*TP*GP*GP*GP*GP*T)-3') Authors: Patel, D.J, Wang, Y. Deposit date: 1993-09-28 Release date: 1994-01-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a parallel-stranded G-quadruplex DNA. J.Mol.Biol., 234, 1993
112D	MOLECULAR STRUCTURE OF THE G.A BASE PAIR IN DNA AND ITS IMPLICATIONS FOR THE MECHANISM OF TRANSVERSION MUTATIONS Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*AP*GP*CP*G)-3') Authors: Brown, T, Hunter, W.N, Kneale, G, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Molecular structure of the G.A base pair in DNA and its implications for the mechanism of transversion mutations. Proc.Natl.Acad.Sci.USA, 83, 1986
143D	SOLUTION STRUCTURE OF THE HUMAN TELOMERIC REPEAT D(AG3[T2AG3]3) OF THE G-QUADRUPLEX Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*G)-3') Authors: Wang, Y, Patel, D.J. Deposit date: 1993-10-08 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure, 1, 1993
170D	SOLUTION STRUCTURE OF A DNA DODECAMER CONTAINING THE ANTI-NEOPLASTIC AGENT ARABINOSYLCYTOSINE: COMBINED USE OF NMR, RESTRAINED MOLECULAR DYNAMICS AND FULL RELAXATION MATRIX REFINEMENT Descriptor: DNA/RNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*T)-R(P*CAR)-D(P*GP*CP*G)-3') Authors: Schweitzer, B.I, Mikita, T, Kellogg, G.W, Gardner, K.H, Beardsley, G.P. Deposit date: 1994-03-14 Release date: 1994-07-31 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a DNA dodecamer containing the anti-neoplastic agent arabinosylcytosine: combined use of NMR, restrained molecular dynamics, and full relaxation matrix refinement. Biochemistry, 33, 1994
7CGP	Cryo-EM structure of the human mitochondrial translocase TIM22 complex at 3.7 angstrom. Descriptor: 1,2-Dioleoyl-sn-glycero-3-phosphoethanolamine, Acylglycerol kinase, mitochondrial, ... Authors: Qi, L, Wang, Q, Guan, Z, Yan, C, Yin, P. Deposit date: 2020-07-01 Release date: 2020-10-14 Last modified: 2021-03-17 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of the human mitochondrial translocase TIM22 complex. Cell Res., 31, 2021
113D	THE STRUCTURE OF GUANOSINE-THYMIDINE MISMATCHES IN B-DNA AT 2.5 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*TP*GP*CP*G)-3') Authors: Hunter, W.N, Brown, T, Kneale, G, Anand, N.N, Rabinovich, D, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The structure of guanosine-thymidine mismatches in B-DNA at 2.5-A resolution. J.Biol.Chem., 262, 1987
7S6H	Human PARP1 deltaV687-E688 bound to NAD+ analog EB-47 and to a DNA double strand break. Descriptor: 1,2-ETHANEDIOL, 2-[4-[(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]carbonylpiperazin-1-yl]-N-(1-oxidanylidene-2,3-dihydroisoindol-4-yl)ethanamide, DNA (5'-D(*CP*GP*AP*CP*G)-3'), ... Authors: Rouleau-Turcotte, E, Pascal, J.M. Deposit date: 2021-09-14 Release date: 2022-06-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Captured snapshots of PARP1 in the active state reveal the mechanics of PARP1 allostery. Mol.Cell, 82, 2022
136D	SOLUTION STRUCTURE OF A PURINE(DOT)PURINE(DOT)PYRIMIDINE DNA TRIPLEX CONTAINING G(DOT)GC AND T(DOT)AT TRIPLES Descriptor: DNA TRIPLEX Authors: Radhakrishnan, I, Patel, D.J. Deposit date: 1993-08-30 Release date: 1994-04-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a purine.purine.pyrimidine DNA triplex containing G.GC and T.AT triples. Structure, 1, 1993
114D	INOSINE-ADENINE BASE PAIRS IN A B-DNA DUPLEX Descriptor: DNA (5'-D(*CP*GP*CP*IP*AP*AP*TP*TP*AP*GP*CP*G)-3') Authors: Corfield, P.W.R, Hunter, W.N, Brown, T, Robinson, P, Kennard, O. Deposit date: 1993-01-04 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Inosine.adenine base pairs in a B-DNA duplex. Nucleic Acids Res., 15, 1987
115D	ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION Descriptor: DNA (5'-D(*GP*GP*(BRU)P*AP*(BRU)P*AP*CP*C)-3') Authors: Kennard, O, Cruse, W.B.T, Nachman, J, Prange, T, Shakked, Z, Rabinovich, D. Deposit date: 1993-02-12 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Ordered water structure in an A-DNA octamer at 1.7 A resolution. J.Biomol.Struct.Dyn., 3, 1986
116D	CRYSTAL AND MOLECULAR STRUCTURE OF THE A-DNA DODECAMER D(CCGTACGTACGG): CHOICE OF FRAGMENT HELICAL AXIS Descriptor: DNA (5'-D(*CP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*G)-3') Authors: Bingman, C.A, Zon, G, Sundaralingam, M. Deposit date: 1993-02-10 Release date: 1993-04-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal and molecular structure of the A-DNA dodecamer d(CCGTACGTACGG). Choice of fragment helical axis. J.Mol.Biol., 227, 1992
117D	CRYSTAL AND MOLECULAR STRUCTURE OF THE ALTERNATING DODECAMER D(GCGTACGTACGC) IN THE A-DNA FORM: COMPARISON WITH THE ISOMORPHOUS NON-ALTERNATING DODECAMER D(CCGTACGTACGG) Descriptor: DNA (5'-D(*GP*CP*GP*TP*AP*CP*GP*TP*AP*CP*GP*C)-3') Authors: Bingman, C.A, Jain, S, Zon, G, Sundaralingam, M. Deposit date: 1993-02-10 Release date: 1993-04-15 Last modified: 2023-03-22 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Crystal and molecular structure of the alternating dodecamer d(GCGTACGTACGC) in the A-DNA form: comparison with the isomorphous non-alternating dodecamer d(CCGTACGTACGG). Nucleic Acids Res., 20, 1992
7S2V	Crystal structure of hen egg white lysozyme Descriptor: Lysozyme C, SODIUM ION Authors: Lima, L.M.T.R, Ramos, N.G. Deposit date: 2021-09-03 Release date: 2022-09-07 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.6 Å) Cite: The reproducible normality of the crystallographic B-factor. Anal.Biochem., 645, 2022
118D	CRYSTAL AND MOLECULAR STRUCTURE OF D(GTGCGCAC): INVESTIGATION OF THE EFFECTS OF BASE SEQUENCE ON THE CONFORMATION OF OCTAMER DUPLEXES Descriptor: DNA (5'-D(*GP*TP*GP*CP*GP*CP*AP*C)-3') Authors: Bingman, C.A, Li, X, Zon, G, Sundaralingam, M. Deposit date: 1993-02-11 Release date: 1993-02-11 Last modified: 2023-03-22 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Crystal and molecular structure of d(GTGCGCAC): investigation of the effects of base sequence on the conformation of octamer duplexes. Biochemistry, 31, 1992

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