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8Z9X
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BU of 8z9x by Molmil
Cryo-EM structure of Phytanoyl-CoA-bound human very long-chain fatty acid ABC transporter ABCD3
Descriptor: ATP-binding cassette sub-family D member 3, phytanoyl-CoA
Authors:Li, Y, Chen, Y.X, Zhou, C.Z, Hou, W.T.
Deposit date:2024-04-23
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.96 Å)
Cite:Structural insights into human ABCD3-mediated peroxisomal acyl-CoA translocation
To Be Published
9AX7
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BU of 9ax7 by Molmil
70S initiation complex (tRNA-fMet M1 + CUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-03-06
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.63 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 2024
9CEZ
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BU of 9cez by Molmil
Spizellomyces punctatus Fanzor (SpuFz) State 6
Descriptor: DNA (27-MER), DNA (5'-D(P*TP*AP*CP*CP*CP*GP*GP*GP*CP*AP*TP*A)-3'), MAGNESIUM ION, ...
Authors:Xu, P, Saito, M, Zhang, F.
Deposit date:2024-06-27
Release date:2024-09-11
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.41 Å)
Cite:Structural insights into the diversity and DNA cleavage mechanism of Fanzor.
Cell, 187, 2024
8ZHN
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BU of 8zhn by Molmil
SARS-CoV-2 spike trimer (6P) in complex with three H18 and three R1-32 Fabs (one RBD rotated)
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of H18 Fab, ...
Authors:Yan, Q, Gao, X, Liu, B, Hou, R, He, P, Li, Z, Chen, Q, Wang, J, He, J, Chen, L, Zhao, J, Xiong, X.
Deposit date:2024-05-11
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (4.12 Å)
Cite:Antibodies utilizing VL6-57 light chains target a convergent cryptic epitope on SARS-CoV-2 spike protein helping to drive the genesis of Omicron variants
To Be Published
9CG5
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BU of 9cg5 by Molmil
70S initiation complex (tRNA-fMet M1 + UUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 2024
9CWS
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BU of 9cws by Molmil
Bufavirus 1 at pH 2.6
Descriptor: VP1
Authors:Gulkis, M.C, McKenna, R, Bennett, A.D.
Deposit date:2024-07-30
Release date:2024-08-21
Last modified:2024-09-18
Method:ELECTRON MICROSCOPY (2.73 Å)
Cite:Structural Characterization of Human Bufavirus 1: Receptor Binding and Endosomal pH-Induced Changes.
Viruses, 16, 2024
9FTI
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BU of 9fti by Molmil
Open conformation of the pentameric ligand-gated ion channel, DeCLIC at pH 5 with 10mM EDTA
Descriptor: Neurotransmitter-gated ion-channel ligand-binding domain-containing protein
Authors:Rovsnik, U, Anden, O, Lycksell, M, Delarue, M, Howard, R.J, Lindahl, E.
Deposit date:2024-06-24
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structural characterization of pH-modulated closed and open states in a pentameric ligand-gated ion channel
To Be Published
9EZY
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BU of 9ezy by Molmil
Vibrio cholerae DdmD-DdmE holo complex
Descriptor: 14 nucleotide DNA guide with terminal 5' phosphate, Helicase/UvrB N-terminal domain-containing protein, MAGNESIUM ION, ...
Authors:Loeff, L, Jinek, M.
Deposit date:2024-04-14
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Molecular mechanism of plasmid elimination by the DdmDE defense system.
Science, 385, 2024
9CG6
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BU of 9cg6 by Molmil
70S initiation complex (tRNA-fMet M1 + GUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.61 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 2024
8Z4L
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BU of 8z4l by Molmil
Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Descriptor: RNA (40-MER), RNA (49-MER), ZINC ION, ...
Authors:Zhang, H, Deng, Z, Li, X.
Deposit date:2024-04-17
Release date:2024-08-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Structural basis for the activity of the type VII CRISPR-Cas system.
Nature, 633, 2024
8Z9E
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BU of 8z9e by Molmil
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state II
Descriptor: Protein structure, RNA (34-MER), RNA (39-MER), ...
Authors:Zhang, H, Deng, Z, Li, X.
Deposit date:2024-04-23
Release date:2024-08-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.13 Å)
Cite:Structural basis for the activity of the type VII CRISPR-Cas system.
Nature, 633, 2024
9B1J
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BU of 9b1j by Molmil
Urate bound human URAT1 in the inward-facing state
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, PHOSPHATE ION, Solute carrier family 22 member 12, ...
Authors:Dai, Y, Lee, C.H.
Deposit date:2024-03-13
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Transport mechanism and structural pharmacology of human urate transporter URAT1.
Cell Res., 2024
8Z9C
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BU of 8z9c by Molmil
Cryo-EM structure of NTR-bound type VII CRISPR-Cas complex at substrate-engaged state I
Descriptor: Protein structure, RNA (41-MER), RNA (48-MER), ...
Authors:Zhang, H, Deng, Z, Li, X.
Deposit date:2024-04-23
Release date:2024-08-21
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.01 Å)
Cite:Structural basis for the activity of the type VII CRISPR-Cas system.
Nature, 633, 2024
9BDD
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BU of 9bdd by Molmil
Cryo-EM Structure of Non-Cognate Substrate Bound in the Entry Site (ES) of Human Mitochondrial Transcription Elongation Complex
Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, DNA-directed RNA polymerase, mitochondrial, ...
Authors:Herbine, K.H, Nayak, A.R, Temiakov, D.
Deposit date:2024-04-11
Release date:2024-09-04
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Structural basis for substrate binding and selection by human mitochondrial RNA polymerase.
Nat Commun, 15, 2024
8ZYN
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BU of 8zyn by Molmil
Cryo-EM Structure of inhibitor-free hERG Channel
Descriptor: Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.27 Å)
Cite:Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
9B1L
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BU of 9b1l by Molmil
Urate bound human URAT1 in the outward-facing state.
Descriptor: Solute carrier family 22 member 12, URIC ACID
Authors:Dai, Y, Lee, C.H.
Deposit date:2024-03-13
Release date:2024-09-18
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Transport mechanism and structural pharmacology of human urate transporter URAT1.
Cell Res., 2024
9CG7
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BU of 9cg7 by Molmil
70S initiation complex (tRNA-fMet M1 + AUG start codon)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Mattingly, J.M, Nguyen, H.A, Dunham, C.M.
Deposit date:2024-06-28
Release date:2024-09-18
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Structural analysis of noncanonical translation initiation complexes.
J.Biol.Chem., 2024
9GGQ
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BU of 9ggq by Molmil
E.coli gyrase holocomplex with cleaved chirally wrapped 217 bp DNA fragment and moxifloxacin
Descriptor: 1-cyclopropyl-6-fluoro-8-methoxy-7-[(4aS,7aS)-octahydro-6H-pyrrolo[3,4-b]pyridin-6-yl]-4-oxo-1,4-dihydroquinoline-3-carboxylic acid, DNA gyrase subunit A, DNA gyrase subunit B, ...
Authors:Ghilarov, D, Heddle, J.G, Pabis, M.
Deposit date:2024-08-13
Release date:2024-09-11
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Structural basis of chiral wrap and T-segment capture by Escherichia coli DNA gyrase
Proceedings of the National Academy of Sciences USA, 2024
9BC4
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BU of 9bc4 by Molmil
Transglutaminase 2 - Intermediate State
Descriptor: CALCIUM ION, GLYCEROL, HB-225 (gluten peptidomimetic TG2 inhibitor), ...
Authors:Sewa, A.S, Mathews, I.I, Khosla, C.
Deposit date:2024-04-07
Release date:2024-07-03
Last modified:2024-07-17
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Structural and mechanistic analysis of Ca 2+ -dependent regulation of transglutaminase 2 activity using a Ca 2+ -bound intermediate state.
Proc.Natl.Acad.Sci.USA, 121, 2024
9FOR
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BU of 9for by Molmil
Structure of heteromeric amyloid filament of TDP-43 and AXNA11 from FTLD-TDP Type C (variant 1)
Descriptor: Annexin A11, TAR DNA-binding protein 43
Authors:Arseni, D, Ryskeldi-Falcon, B.
Deposit date:2024-06-12
Release date:2024-07-24
Method:ELECTRON MICROSCOPY (2.75 Å)
Cite:Heteromeric amyloid filaments of ANXA11 and TDP-43 in FTLD-TDP Type C.
Biorxiv, 2024
8Z5G
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BU of 8z5g by Molmil
Cryo-EM structure of E.coli SPFH-NfeD family protein complex QmcA-YbbJ
Descriptor: Inner membrane protein YbbJ, Protein QmcA
Authors:Qiao, Z, Gao, Y.G.
Deposit date:2024-04-18
Release date:2024-08-21
Last modified:2024-09-04
Method:ELECTRON MICROSCOPY (2.9 Å)
Cite:Cryo-EM structure of the SPFH-NfeD family protein complex QmcA-YbbJ.
Structure, 2024
9F1C
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BU of 9f1c by Molmil
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E
Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S11, ...
Authors:Yudin, D, Scaiola, A, Ban, N.
Deposit date:2024-04-18
Release date:2024-08-21
Last modified:2024-10-02
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:NAC guides a ribosomal multienzyme complex for nascent protein processing.
Nature, 633, 2024
8ZYQ
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BU of 8zyq by Molmil
Cryo-EM Structure of pimozide-bound hERG Channel
Descriptor: 3-[1-[4,4-bis(4-fluorophenyl)butyl]piperidin-4-yl]-1~{H}-benzimidazol-2-one, Potassium voltage-gated channel subfamily H member 2
Authors:Miyashita, Y, Moriya, T, Kato, T, Kawasaki, M, Yasuda, Y, Adachi, N, Suzuki, K, Ogasawara, S, Saito, T, Senda, T, Murata, T.
Deposit date:2024-06-18
Release date:2024-09-18
Last modified:2024-10-09
Method:ELECTRON MICROSCOPY (3.18 Å)
Cite:Improved higher resolution cryo-EM structures reveal the binding modes of hERG channel inhibitors.
Structure, 2024
8ZYC
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BU of 8zyc by Molmil
Cryo-EM structure of uropathogenic Escherichia coli CysK:CdiA:tRNA complex A
Descriptor: Cysteine synthase A, MAGNESIUM ION, tRNA nuclease CdiA, ...
Authors:Feng, Z, Yashiro, Y, Tomita, K.
Deposit date:2024-06-17
Release date:2024-08-21
Method:ELECTRON MICROSCOPY (2.99 Å)
Cite:Mechanism of activation of contact-dependent growth inhibition tRNase toxin by the amino acid biogenesis factor CysK in the bacterial competition system.
To Be Published
9B9I
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BU of 9b9i by Molmil
Myxococcus xanthus EncA encapsulin engineered pore mutant with T=1 icosahedral symmetry
Descriptor: Type 1 encapsulin shell protein EncA
Authors:Andreas, M.P, Kwon, S, Giessen, T.W.
Deposit date:2024-04-02
Release date:2024-09-18
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Pore Engineering as a General Strategy to Improve Protein-Based Enzyme Nanoreactor Performance.
Acs Nano, 18, 2024

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PDB entries from 2024-10-09

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