Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
PDB: 177 results

3A0V
DownloadVisualize
BU of 3a0v by Molmil
PAS domain of histidine kinase ThkA (TM1359) (SeMet, F486M/F489M)
Descriptor: ETHANOL, Sensor protein
Authors:Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
Deposit date:2009-03-24
Release date:2009-10-20
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3A0S
DownloadVisualize
BU of 3a0s by Molmil
PAS domain of histidine kinase ThkA (TM1359)
Descriptor: DI(HYDROXYETHYL)ETHER, Sensor protein, TETRAETHYLENE GLYCOL, ...
Authors:Yamada, S, Sugimoto, H, Kobayashi, M, Ohno, A, Nakamura, H, Shiro, Y.
Deposit date:2009-03-24
Release date:2009-10-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.47 Å)
Cite:Structure of PAS-linked histidine kinase and the response regulator complex
Structure, 17, 2009
3B33
DownloadVisualize
BU of 3b33 by Molmil
Crystal structure of the PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus
Descriptor: Sensor protein
Authors:Osipiuk, J, Sather, A, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2007-10-19
Release date:2007-10-30
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (1.83 Å)
Cite:X-ray structure of PAS domain of nitrogen regulation protein NR(II) from Vibrio parahaemolyticus.
To be Published
5GX9
DownloadVisualize
BU of 5gx9 by Molmil
PYP mutant - E46Q
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Yonezawa, K.
Deposit date:2016-09-16
Release date:2017-08-30
Last modified:2023-11-08
Method:NEUTRON DIFFRACTION (1.493 Å)
Cite:Neutron crystallography of photoactive yellow protein reveals unusual protonation state of Arg52 in the crystal
Sci Rep, 7, 2017
5HD3
DownloadVisualize
BU of 5hd3 by Molmil
Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: Dark structure of photoactive yellow protein
Descriptor: Photoactive yellow protein
Authors:Pande, K, Tenboer, J, Schmidt, M.
Deposit date:2016-01-04
Release date:2016-05-18
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352, 2016
5HDC
DownloadVisualize
BU of 5hdc by Molmil
Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: 100 fs to 400 fs Structure
Descriptor: Photoactive yellow protein
Authors:Pande, K, Tenboer, J, Schmidt, M.
Deposit date:2016-01-05
Release date:2016-05-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352, 2016
5HDD
DownloadVisualize
BU of 5hdd by Molmil
Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: 800 fs to 1200 fs Structure
Descriptor: Photoactive yellow protein
Authors:Pande, K, Tenboer, J, Schmidt, M.
Deposit date:2016-01-05
Release date:2016-05-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352, 2016
5HDS
DownloadVisualize
BU of 5hds by Molmil
Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: 3 ps Structure
Descriptor: Photoactive yellow protein
Authors:Pande, K, Tenboer, J, Schmidt, M.
Deposit date:2016-01-05
Release date:2016-05-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352, 2016
5HD5
DownloadVisualize
BU of 5hd5 by Molmil
Femtosecond Structural Dynamics Drives the Trans/Cis Isomerization in Photoactive Yellow Protein: 200 ns time delay photo-activated (light) structure
Descriptor: Photoactive yellow protein
Authors:Pande, K, Tenboer, J, Schmidt, M.
Deposit date:2016-01-04
Release date:2016-05-25
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Femtosecond structural dynamics drives the trans/cis isomerization in photoactive yellow protein.
Science, 352, 2016
5IU1
DownloadVisualize
BU of 5iu1 by Molmil
N-terminal PAS domain homodimer of PpANR MAP3K from Physcomitrella patens.
Descriptor: CTR1-like protein, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Stevenson, R.R, Trinh, C.H, Edwards, T.A, Cuming, A.C.
Deposit date:2016-03-17
Release date:2016-06-01
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Genetic Analysis of Physcomitrella patens Identifies ABSCISIC ACID NON-RESPONSIVE, a Regulator of ABA Responses Unique to Basal Land Plants and Required for Desiccation Tolerance.
Plant Cell, 28, 2016
3UMD
DownloadVisualize
BU of 3umd by Molmil
Structure of pB intermediate of Photoactive yellow protein (PYP) at pH 4.
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Tripathi, S, Srajer, V, Purwar, N, Henning, R, Schmidt, M.
Deposit date:2011-11-13
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:pH Dependence of the Photoactive Yellow Protein Photocycle Investigated by Time-Resolved Crystallography.
Biophys.J., 102, 2012
3UME
DownloadVisualize
BU of 3ume by Molmil
Structure of pB intermediate of Photoactive yellow protein (PYP) at pH 7
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Tripathi, S, Srajer, V, Purwar, N, Henning, R, Schmidt, M.
Deposit date:2011-11-13
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:pH Dependence of the Photoactive Yellow Protein Photocycle Investigated by Time-Resolved Crystallography.
Biophys.J., 102, 2012
3VE4
DownloadVisualize
BU of 3ve4 by Molmil
Structures of ICT and PR1 intermediates from time-resolved laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Jung, Y.O.
Deposit date:2012-01-07
Release date:2013-03-20
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
3VE3
DownloadVisualize
BU of 3ve3 by Molmil
Structure of IT Intermediate from time-resolved laue crystallography
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Ihee, H, Jung, Y.O.
Deposit date:2012-01-07
Release date:2013-03-20
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Volume-conserving trans-cis isomerization pathways in photoactive yellow protein visualized by picosecond X-ray crystallography
NAT.CHEM., 5, 2013
1XFQ
DownloadVisualize
BU of 1xfq by Molmil
structure of the blue shifted intermediate state of the photoactive yellow protein lacking the N-terminal part
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Bernard, C, Houben, K, Derix, N.M, Marks, D, van der Horst, M.A, Hellingwerf, K.J, Boelens, R, Kaptein, R, van Nuland, N.A.
Deposit date:2004-09-15
Release date:2005-08-16
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:The solution structure of a transient photoreceptor intermediate: delta25 photoactive yellow protein
STRUCTURE, 13, 2005
1XJ3
DownloadVisualize
BU of 1xj3 by Molmil
bjFixLH in unliganded ferrous form
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
Authors:Key, J, Moffat, K.
Deposit date:2004-09-22
Release date:2005-03-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling
Biochemistry, 44, 2005
1XJ4
DownloadVisualize
BU of 1xj4 by Molmil
CO-bound structure of BjFixLH
Descriptor: CARBON MONOXIDE, CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Key, J, Moffat, K.
Deposit date:2004-09-22
Release date:2005-03-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling
Biochemistry, 44, 2005
1XJ6
DownloadVisualize
BU of 1xj6 by Molmil
Structure of bjFixLH in the unliganded ferrous form
Descriptor: CHLORIDE ION, PROTOPORPHYRIN IX CONTAINING FE, SODIUM ION, ...
Authors:Key, J, Moffat, K.
Deposit date:2004-09-22
Release date:2005-03-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling
Biochemistry, 44, 2005
1XFN
DownloadVisualize
BU of 1xfn by Molmil
NMR structure of the ground state of the photoactive yellow protein lacking the N-terminal part
Descriptor: 4'-HYDROXYCINNAMIC ACID, Photoactive yellow protein
Authors:Bernard, C, Houben, K, Derix, N.M, Marks, D, van der Horst, M.A, Hellingwerf, K.J, Boelens, R, Kaptein, R, van Nuland, N.A.
Deposit date:2004-09-15
Release date:2005-08-16
Last modified:2022-03-02
Method:SOLUTION NMR
Cite:The solution structure of a transient photoreceptor intermediate: delta25 photoactive yellow protein
STRUCTURE, 13, 2005
1XJ2
DownloadVisualize
BU of 1xj2 by Molmil
CO-bound structure of bjFixLH
Descriptor: CARBON MONOXIDE, PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
Authors:Key, J, Moffat, K.
Deposit date:2004-09-22
Release date:2005-03-29
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structures of Deoxy and CO-Bound bjFixLH Reveal Details of Ligand Recognition and Signaling
Biochemistry, 44, 2005
1Y28
DownloadVisualize
BU of 1y28 by Molmil
Crystal structure of the R220A metBJFIXL HEME domain
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, Sensor protein fixL
Authors:Dunham, C.M, Dioum, E.M, Tuckerman, J.R, Gonzalez, G, Scott, W.G, Gilles-Gonzalez, M.A.
Deposit date:2004-11-21
Release date:2004-12-07
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A distal arginine in the oxygen-sensing heme-PAS domains is essential to ligand binding, signal transduction, and structure
Biochemistry, 42, 2003
4BBT
DownloadVisualize
BU of 4bbt by Molmil
The PR1 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-27
Release date:2012-11-14
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
4B9O
DownloadVisualize
BU of 4b9o by Molmil
The PR0 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-06
Release date:2012-11-14
Last modified:2019-02-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography
Proc.Natl.Acad.Sci.USA, 109, 2012
4BBV
DownloadVisualize
BU of 4bbv by Molmil
The PB0 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-28
Release date:2012-11-14
Last modified:2019-01-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012
4BBU
DownloadVisualize
BU of 4bbu by Molmil
The PR2 Photocycle Intermediate of Photoactive Yellow Protein
Descriptor: 4'-HYDROXYCINNAMIC ACID, PHOTOACTIVE YELLOW PROTEIN
Authors:Schotte, F, Cho, H.S, Kaila, V.R.I, Kamikubo, H, Dashdorj, N, Henry, E.R, Graber, T.J, Henning, R, Wulff, M, Hummer, G, Kataoka, M, Anfinrud, P.A.
Deposit date:2012-09-27
Release date:2012-11-14
Last modified:2019-05-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Watching a Signaling Protein Function in Real Time Via 100-Ps Time-Resolved Laue Crystallography.
Proc.Natl.Acad.Sci.USA, 109, 2012

219869

PDB entries from 2024-05-15

PDB statisticsPDBj update infoContact PDBjnumon