6SD6
 
 | | Structure of VapBC from Shigella sonnei | | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | | Authors: | Lea, S.M, Hollingshead, S. | | Deposit date: | 2019-07-26 | | Release date: | 2020-08-26 | | Last modified: | 2024-01-24 | | Method: | X-RAY DIFFRACTION (2.61 Å) | | Cite: | Polymorphisms in the VapBC toxin:antitoxin system mediate high frequency plasmid loss in Shigella sonnei
To Be Published
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7VWO
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3TND
 | | Crystal structure of Shigella flexneri VapBC toxin-antitoxin complex | | Descriptor: | Antitoxin VapB, SODIUM ION, SULFATE ION, ... | | Authors: | Dienemann, C, Boggild, A, Winther, K.S, Gerdes, K, Brodersen, D.E. | | Deposit date: | 2011-09-01 | | Release date: | 2011-11-02 | | Last modified: | 2024-02-28 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Crystal Structure of the VapBC Toxin-Antitoxin Complex from Shigella flexneri Reveals a Hetero-Octameric DNA-Binding Assembly.
J.Mol.Biol., 414, 2011
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5SV2
 | | Toxin VapC21 from Mycobacterium tuberculosis | | Descriptor: | Ribonuclease VapC21 | | Authors: | Valadares, N.F. | | Deposit date: | 2016-08-04 | | Release date: | 2016-09-14 | | Last modified: | 2023-10-04 | | Method: | X-RAY DIFFRACTION (1.31 Å) | | Cite: | Crystal structure of VapC21 from Mycobacterium tuberculosis at 1.31 angstrom resolution.
Biochem.Biophys.Res.Commun., 478, 2016
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6IFC
 | | Crystal structure of VapBC from Salmonella typhimurium | | Descriptor: | Antitoxin VapB, CALCIUM ION, tRNA(fMet)-specific endonuclease VapC | | Authors: | Park, D.W, Lee, B.J. | | Deposit date: | 2018-09-19 | | Release date: | 2020-01-29 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.99 Å) | | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease.
Faseb J., 34, 2020
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6IFM
 | | Crystal structure of DNA bound VapBC from Salmonella typhimurium | | Descriptor: | Antitoxin VapB, DNA backward (27-MER), DNA forward (27-MER), ... | | Authors: | Park, D.W, Lee, B.J. | | Deposit date: | 2018-09-20 | | Release date: | 2020-01-29 | | Last modified: | 2024-03-27 | | Method: | X-RAY DIFFRACTION (2.804 Å) | | Cite: | Crystal structure of proteolyzed VapBC and DNA-bound VapBC from Salmonella enterica Typhimurium LT2 and VapC as a putative Ca2+-dependent ribonuclease.
Faseb J., 34, 2020
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5K8J
 | | Structure of Caulobacter crescentus VapBC1 (apo form) | | Descriptor: | GLYCEROL, Ribonuclease VapC, VapB family protein | | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | | Deposit date: | 2016-05-30 | | Release date: | 2016-12-28 | | Last modified: | 2024-11-06 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.
Nucleic Acids Res., 45, 2017
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5L6L
 | | Structure of Caulobacter crescentus VapBC1 bound to operator DNA | | Descriptor: | DNA (27-MER), Ribonuclease VapC, VapB family protein | | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | | Deposit date: | 2016-05-30 | | Release date: | 2016-12-28 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.7 Å) | | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.
Nucleic Acids Res., 45, 2017
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5L6M
 | | Structure of Caulobacter crescentus VapBC1 (VapB1deltaC:VapC1 form) | | Descriptor: | GLYCEROL, MALONATE ION, Ribonuclease VapC, ... | | Authors: | Bendtsen, K.L, Xu, K, Luckmann, M, Brodersen, D.E. | | Deposit date: | 2016-05-30 | | Release date: | 2016-12-28 | | Last modified: | 2024-01-10 | | Method: | X-RAY DIFFRACTION (1.9 Å) | | Cite: | Toxin inhibition in C. crescentus VapBC1 is mediated by a flexible pseudo-palindromic protein motif and modulated by DNA binding.
Nucleic Acids Res., 45, 2017
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3IX7
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3I8O
 | | A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661. | | Descriptor: | ACETATE ION, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... | | Authors: | Tan, K, Chhor, G, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) | | Deposit date: | 2009-07-09 | | Release date: | 2009-07-21 | | Last modified: | 2024-10-30 | | Method: | X-RAY DIFFRACTION (2.638 Å) | | Cite: | A domain of a functionally unknown protein from Methanocaldococcus jannaschii DSM 2661.
To be Published
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5WZ4
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5WZF
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2H1C
 | | Crystal Structure of FitAcB from Neisseria gonorrhoeae | | Descriptor: | ACETATE ION, MAGNESIUM ION, SULFATE ION, ... | | Authors: | Mattison, K, Wilbur, J.S, So, M, Brennan, R.G. | | Deposit date: | 2006-05-16 | | Release date: | 2006-09-26 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Structure of FitAB from Neisseria gonorrhoeae bound to DNA reveals a tetramer of toxin-antitoxin heterodimers containing pin domains and ribbon-helix-helix motifs.
J.Biol.Chem., 281, 2006
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2FE1
 | | Crystal Structure of PAE0151 from Pyrobaculum aerophilum | | Descriptor: | CALCIUM ION, CHLORIDE ION, MANGANESE (II) ION, ... | | Authors: | Bunker, R.D, Baker, E.N, Arcus, V.L. | | Deposit date: | 2005-12-15 | | Release date: | 2005-12-27 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (2.2 Å) | | Cite: | Crystal structure of PAE0151 from Pyrobaculum aerophilum, a PIN-domain (VapC) protein from a toxin-antitoxin operon.
Proteins, 72, 2008
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1V8P
 | | Crystal structure of PAE2754 from Pyrobaculum aerophilum | | Descriptor: | CHLORIDE ION, hypothetical protein PAE2754 | | Authors: | Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. | | Deposit date: | 2004-01-12 | | Release date: | 2004-02-10 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.52 Å) | | Cite: | Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
J.Biol.Chem., 279, 2004
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1V8O
 | | Crystal Structure of PAE2754 from Pyrobaculum aerophilum | | Descriptor: | CHLORIDE ION, hypothetical protein PAE2754 | | Authors: | Arcus, V.L, Backbro, K, Roos, A, Daniel, E.L, Baker, E.N. | | Deposit date: | 2004-01-12 | | Release date: | 2004-02-10 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Distant structural homology leads to the functional characterization of an archaeal PIN domain as an exonuclease
J.Biol.Chem., 279, 2004
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5ED0
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5ECY
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1W8I
 | | The Structure of gene product af1683 from Archaeoglobus fulgidus. | | Descriptor: | PUTATIVE VAPC RIBONUCLEASE AF_1683 | | Authors: | Midwest Center for Structural Genomics (MCSG), Cuff, M.E, Zhang, R, Ginell, S.L, Xu, X, Savchenko, A, Edwards, A, Joachimiak, A. | | Deposit date: | 2004-09-22 | | Release date: | 2004-11-16 | | Last modified: | 2024-10-23 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | The Structure of Gene Product Af1683 from Archaeoglobus Fulgidus
To be Published
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9H6C
 | | Crystal structure of the E. coli F-plasmid VapBC toxin-antitoxin complex (VapB T3N) | | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | | Authors: | Hollingshead, S, McVicker, G, Nielsen, M.R, Zhang, Y, Pilla, G, Jones, R.A, Thomas, J.C, Johansen, S.E.H, Exley, R.M, Brodersen, D.E, Tang, C.M. | | Deposit date: | 2024-10-24 | | Release date: | 2024-12-18 | | Last modified: | 2025-02-12 | | Method: | X-RAY DIFFRACTION (2.65 Å) | | Cite: | Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system.
Mbio, 16, 2025
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9H6B
 | | Crystal structure of the E. coli F-plasmid VapBC toxin-antitoxin complex (VapB T3N, A13P, L16R) | | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | | Authors: | Hollingshead, S, McVicker, G, Nielsen, M.R, Zhang, Y, Pilla, G, Jones, R.A, Thomas, J.C, Johansen, S.E.H, Exley, R.M, Brodersen, D.E, Tang, C.M. | | Deposit date: | 2024-10-24 | | Release date: | 2024-12-18 | | Last modified: | 2025-02-12 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system.
Mbio, 16, 2025
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9H6A
 | | Crystal structure of the E. coli F-plasmid VapBC toxin-antitoxin complex | | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | | Authors: | Hollingshead, S, McVicker, G, Nielsen, M.R, Zhang, Y, Pilla, G, Jones, R.A, Thomas, J.C, Johansen, S.E.H, Exley, R.M, Brodersen, D.E, Tang, C.M. | | Deposit date: | 2024-10-24 | | Release date: | 2024-12-18 | | Last modified: | 2025-02-12 | | Method: | X-RAY DIFFRACTION (2.86 Å) | | Cite: | Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system.
Mbio, 16, 2025
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9H6D
 | | Crystal structure of the E. coli F-plasmid VapBC toxin-antitoxin complex (VapB V5E) | | Descriptor: | Antitoxin, tRNA(fMet)-specific endonuclease VapC | | Authors: | Hollingshead, S, McVicker, G, Nielsen, M.R, Zhang, Y, Pilla, G, Jones, R.A, Thomas, J.C, Johansen, S.E.H, Exley, R.M, Brodersen, D.E, Tang, C.M. | | Deposit date: | 2024-10-24 | | Release date: | 2024-12-18 | | Last modified: | 2025-02-12 | | Method: | X-RAY DIFFRACTION (3.15 Å) | | Cite: | Shared mechanisms of enhanced plasmid maintenance and antibiotic tolerance mediated by the VapBC toxin:antitoxin system.
Mbio, 16, 2025
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5ECW
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