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PDB: 1477 results

7Q0R
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Structure of the Candida albicans 80S ribosome in complex with blasticidin s
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0, ...
Authors:Kolosova, O, Zgadzay, Y, Stetsenko, A, Jenner, L, Guskov, A, Yusupova, G, Yusupov, M.
Deposit date:2021-10-16
Release date:2022-05-25
Last modified:2022-06-08
Method:ELECTRON MICROSCOPY (2.67 Å)
Cite:E-site drug specificity of the human pathogen Candida albicans ribosome.
Sci Adv, 8, 2022
7Q4K
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Erythromycin-stalled Escherichia coli 70S ribosome with streptococcal MsrDL nascent chain
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Fostier, C.R, Ousalem, F, Soufari, H, Leroy, E.C, Ngo, S, Innis, A, Hashem, Y, Boel, G.
Deposit date:2021-10-31
Release date:2022-11-16
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Regulation of the macrolide resistance ABC-F translation factor MsrD.
Nat Commun, 14, 2023
7QV1
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Bacillus subtilis collided disome (Leading 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
7QV2
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Bacillus subtilis collided disome (Collided 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2022-04-06
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
7QH4
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Structure of the B. subtilis disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-10
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (5.45 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QV3
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Bacillus subtilis MutS2-collided disome complex (MutS2 conf.2; Leading 70S)
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Filbeck, S, Pfeffer, S.
Deposit date:2022-01-19
Release date:2022-03-09
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (5.14 Å)
Cite:Bacterial ribosome collision sensing by a MutS DNA repair ATPase paralogue.
Nature, 603, 2022
7QGH
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Structure of the E. coli disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-08
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (4.48 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QGU
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Structure of the B. subtilis disome - stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-10
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (4.75 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QG8
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Structure of the collided E. coli disome - VemP-stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-07
Release date:2022-03-16
Last modified:2022-03-30
Method:ELECTRON MICROSCOPY (3.97 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QGN
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Structure of the SmrB-bound E. coli disome - stalled 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-09
Release date:2022-04-27
Method:ELECTRON MICROSCOPY (3.37 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QP7
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Structure of the human 48S initiation complex in closed state (h48S AUG closed)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N.
Deposit date:2022-01-03
Release date:2022-05-11
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.
Nucleic Acids Res., 50, 2022
7QP6
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Structure of the human 48S initiation complex in open state (h48S AUG open)
Descriptor: 18S rRNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ...
Authors:Yi, S.-H, Petrychenko, V, Schliep, J.E, Goyal, A, Linden, A, Chari, A, Urlaub, H, Stark, H, Rodnina, M.V, Adio, S, Fischer, N.
Deposit date:2022-01-03
Release date:2022-05-11
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (4.7 Å)
Cite:Conformational rearrangements upon start codon recognition in human 48S translation initiation complex.
Nucleic Acids Res., 50, 2022
7QIX
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Specific features and methylation sites of a plant ribosome. 40S body ribosomal subunit.
Descriptor: 18S rRNA body, 30S ribosomal protein S15, chloroplastic, ...
Authors:Cottilli, P, Itoh, Y, Amunts, A.
Deposit date:2021-12-16
Release date:2022-06-15
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.53 Å)
Cite:Cryo-EM structure and rRNA modification sites of a plant ribosome.
Plant Commun., 3, 2022
7QGR
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BU of 7qgr by Molmil
Structure of the SmrB-bound E. coli disome - collided 70S ribosome
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S1, ...
Authors:Kratzat, H, Buschauer, R, Berninghausen, O, Beckmann, R.
Deposit date:2021-12-09
Release date:2022-06-22
Method:ELECTRON MICROSCOPY (5.7 Å)
Cite:Ribosome collisions induce mRNA cleavage and ribosome rescue in bacteria.
Nature, 603, 2022
7QGG
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Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state
Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ...
Authors:Pulk, A, Kipper, K, Mansour, A.
Deposit date:2021-12-08
Release date:2022-10-26
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.86 Å)
Cite:Neuronal RNA granules are ribosome complexes stalled at the pre-translocation state.
J.Mol.Biol., 434, 2022
7QVP
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Human collided disome (di-ribosome) stalled on XBP1 mRNA
Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ...
Authors:Denk, T.G, Tesina, P, Beckmann, R.
Deposit date:2022-01-22
Release date:2022-10-12
Last modified:2022-11-23
Method:ELECTRON MICROSCOPY (3 Å)
Cite:A distinct mammalian disome collision interface harbors K63-linked polyubiquitination of uS10 to trigger hRQT-mediated subunit dissociation.
Nat Commun, 13, 2022
7QIZ
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Specific features and methylation sites of a plant 80S ribosome
Descriptor: 1,4-DIAMINOBUTANE, 18S, 25S rRNA, ...
Authors:Cottilli, P, Itoh, Y, Amunts, A.
Deposit date:2021-12-16
Release date:2022-08-03
Last modified:2024-04-24
Method:ELECTRON MICROSCOPY (2.38 Å)
Cite:Cryo-EM structure and rRNA modification sites of a plant ribosome.
Plant Commun., 3, 2022
4U20
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BU of 4u20 by Molmil
Crystal structure of the E. coli ribosome bound to flopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U27
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BU of 4u27 by Molmil
Crystal structure of the E. coli ribosome bound to flopristin and linopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U56
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BU of 4u56 by Molmil
Crystal structure of Blasticidin S bound to the yeast 80S ribosome
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M.
Deposit date:2014-07-24
Release date:2014-10-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Structural basis for the inhibition of the eukaryotic ribosome.
Nature, 513, 2014
4U50
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BU of 4u50 by Molmil
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Descriptor: (4S,5R,10E,12Z,16R,16aS,17S,18R,19aR,23aR)-4-hydroxy-5,16a,21-trimethyl-4,5,6,7,16,16a,22,23-octahydro-3H,18H,19aH-spiro[16,18-methano[1,6,12]trioxacyclooctadecino[3,4-d]chromene-17,2'-oxirane]-3,9,14-trione, 18S ribosomal RNA, 25S ribosomal RNA, ...
Authors:Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M.
Deposit date:2014-07-24
Release date:2014-10-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for the inhibition of the eukaryotic ribosome.
Nature, 513, 2014
4U24
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BU of 4u24 by Molmil
Crystal structure of the E. coli ribosome bound to dalfopristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014
4U53
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BU of 4u53 by Molmil
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
Descriptor: (3beta,7alpha)-3,7,15-trihydroxy-12,13-epoxytrichothec-9-en-8-one, 18S ribosomal RNA, 25S ribosomal RNA, ...
Authors:Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M.
Deposit date:2014-07-24
Release date:2014-10-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural basis for the inhibition of the eukaryotic ribosome.
Nature, 513, 2014
4U4Y
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Crystal structure of Pactamycin bound to the yeast 80S ribosome
Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ...
Authors:Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M.
Deposit date:2014-07-24
Release date:2014-10-22
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural basis for the inhibition of the eukaryotic ribosome.
Nature, 513, 2014
4U1U
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Crystal structure of the E. coli ribosome bound to quinupristin.
Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ...
Authors:Noeske, J, Huang, J, Olivier, N.B, Giacobbe, R.A, Zambrowski, M, Cate, J.H.D.
Deposit date:2014-07-16
Release date:2014-07-30
Last modified:2024-07-10
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Synergy of streptogramin antibiotics occurs independently of their effects on translation.
Antimicrob.Agents Chemother., 58, 2014

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