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PDB: 256 results

4U4M
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Crystal structure of 0.5M urea unfolded YagE, a KDG aldolase protein in complex with Pyruvate
Descriptor: 1,2-ETHANEDIOL, PYRUVIC ACID, UREA, ...
Authors:Manoj Kumar, P, Bhaskar, V, Manicka, S, Krishnaswamy, S.
Deposit date:2014-07-24
Release date:2015-07-29
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Crystal structure of 0.5M urea unfolded YagE, a KDG aldolase protein in complex with Pyruvate
To be published
8DO5
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BU of 8do5 by Molmil
Crystal structure of NahE in complex with intermediate (R)-4-hydroxy-4-(2-hydroxyphenyl)-2-iminobutanoate
Descriptor: (4R)-4-hydroxy-4-(2-hydroxyphenyl)butanoic acid, DIMETHYL SULFOXIDE, Trans-ohydrobenzylidenepyruvate hydratase aldolase
Authors:LeVieux, J.A, Hardtke, H.A, Zhang, Y.J.
Deposit date:2022-07-12
Release date:2022-12-28
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A mutagenic analysis of NahE, a hydratase-aldolase in the naphthalene degradative pathway.
Arch.Biochem.Biophys., 733, 2023
8GEK
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Dihydrodipicolinate synthase with pyruvate from Candidatus Liberibacter solanacearum
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase
Authors:Gilkes, J.M, Frampton, R.A, Board, A, Sheen, C.R, Smith, G.R, Dobson, R.C.J.
Deposit date:2023-03-06
Release date:2024-03-20
Method:X-RAY DIFFRACTION (1.93 Å)
Cite:Dihydrodipicolinate synthase with pyruvate from the plant pathogen, Candidatus Liberibacter solanacearum
To Be Published
1DHP
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BU of 1dhp by Molmil
DIHYDRODIPICOLINATE SYNTHASE
Descriptor: DIHYDRODIPICOLINATE SYNTHASE, POTASSIUM ION
Authors:Mirwaldt, C, Korndoerfer, I, Huber, R.
Deposit date:1995-02-09
Release date:1997-02-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of dihydrodipicolinate synthase from Escherichia coli at 2.5 A resolution.
J.Mol.Biol., 246, 1995
6MQH
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Crystal structure of 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) from Burkholderia mallei
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2018-10-09
Release date:2018-10-31
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of 4-hydroxy-tetrahydrodipicolinate synthase (HTPA synthase) from Burkholderia mallei
To be Published
2EHH
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Crystal structure of dihydrodipicolinate synthase from aquifex aeolicus
Descriptor: Dihydrodipicolinate synthase, PHOSPHATE ION
Authors:Kumarevel, T.S, Karthe, P, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2007-03-06
Release date:2007-05-01
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of dihydrodipicolinate synthase from aquifex aeolicus
To be Published
6NVA
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BU of 6nva by Molmil
Crystal structure of Escherichia coli dihydrodipicolinate synthase and propionate covalently bound to K161.
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, SODIUM ION
Authors:Thomas, L.M, Chooback, L.
Deposit date:2019-02-04
Release date:2019-02-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Crystal structure of Escherichia coli dihydrodipicolinate synthase and propionate covalently bound to K161.
To Be Published
1NAL
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BU of 1nal by Molmil
THE THREE-DIMENSIONAL STRUCTURE OF N-ACETYLNEURAMINATE LYASE FROM ESCHERICHIA COLI
Descriptor: N-ACETYLNEURAMINATE LYASE, SULFATE ION
Authors:Izard, T, Lawrence, M.C, Malby, R.L, Lilley, G.G, Colman, P.M.
Deposit date:1994-02-28
Release date:1995-09-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The three-dimensional structure of N-acetylneuraminate lyase from Escherichia coli.
Structure, 2, 1994
1O5K
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BU of 1o5k by Molmil
Crystal structure of Dihydrodipicolinate synthase (TM1521) from Thermotoga maritima at 1.80 A resolution
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CALCIUM ION
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2003-09-22
Release date:2003-10-07
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of Dihydrodipicolinate synthase (TM1521) from Thermotoga maritima at 1.80 A resolution
To be published
2HMC
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BU of 2hmc by Molmil
The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens
Descriptor: Dihydrodipicolinate synthase, MAGNESIUM ION
Authors:Kim, Y, Zhang, R, Xu, X, Zheng, H, Savchenko, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2006-07-11
Release date:2006-09-05
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The Crystal Structure of Dihydrodipicolinate Synthase DapA from Agrobacterium tumefaciens
To be Published, 2006
6VVI
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Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1)
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, GLYCEROL, ...
Authors:Lee, M, Hall, C.J.
Deposit date:2020-02-18
Release date:2021-02-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.145 Å)
Cite:Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms.
Febs J., 288, 2021
6VVH
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Arabidopsis thaliana dihydrodipicolinate synthase isoform 1 (DHDPS1) in complex with lysine
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 4-hydroxy-tetrahydrodipicolinate synthase 1, chloroplastic, ...
Authors:Lee, M, Hall, C.J.
Deposit date:2020-02-18
Release date:2021-02-24
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.792 Å)
Cite:Differential lysine-mediated allosteric regulation of plant dihydrodipicolinate synthase isoforms.
Febs J., 288, 2021
6XGS
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BU of 6xgs by Molmil
Crystal Structure of Dihydrodipicolinate synthase (DHDPS) from Brucella suis 1330
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CITRIC ACID, PHOSPHATE ION
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2020-06-18
Release date:2020-07-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Dihydrodipicolinate synthase (DHDPS) from Brucella suis 1330
to be published
6DAQ
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PhdJ bound to substrate intermediate
Descriptor: PhdJ
Authors:Medellin, B.P, LeVieux, J.A, Zhang, Y.J, Whitman, C.P.
Deposit date:2018-05-01
Release date:2019-04-10
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57, 2018
6DAN
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BU of 6dan by Molmil
PhdJ WT 2 Angstroms resolution
Descriptor: CHLORIDE ION, PhdJ
Authors:Medellin, B.P, LeVieux, J.A, Zhang, Y.J, Whitman, C.P.
Deposit date:2018-05-01
Release date:2019-04-10
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.047 Å)
Cite:Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57, 2018
6DAO
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BU of 6dao by Molmil
NahE WT selenomethionine
Descriptor: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase
Authors:Medellin, B.P, LeVieux, J.A, Zhang, Y.J, Whitman, C.P.
Deposit date:2018-05-01
Release date:2019-05-08
Last modified:2020-01-01
Method:X-RAY DIFFRACTION (1.939 Å)
Cite:Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57, 2018
5T25
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BU of 5t25 by Molmil
Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase from Escherichia coli.
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, LYSINE, SODIUM ION
Authors:Chooback, L, Thomas, L.M, Karsten, W.E, Fleming, C.D, Seabourn, P.
Deposit date:2016-08-23
Release date:2017-03-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.991 Å)
Cite:Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase from Escherichia coli.
To Be Published
5T26
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BU of 5t26 by Molmil
Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase from Escherichia coli.
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Chooback, L, Thomas, L.M, Karsten, W.E, Fleming, C.D, Seabourn, P.
Deposit date:2016-08-23
Release date:2016-10-05
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Kinetic, Spectral and Structural Characterization of the Slow Binding Inhibitor Acetopyruvate with Dihydrodipicolinate Synthase from Escherichia coli.
To Be Published
7C0D
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BU of 7c0d by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (Hydroxypyruvate-bound form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2020-09-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0E
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BU of 7c0e by Molmil
Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (2-oxobutyrate-bound form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Ono, A, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.204 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
7C0C
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Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form)
Descriptor: L-2-keto-3-deoxyarabonate dehydratase
Authors:Watanabe, Y, Nobuchi, R, Watanabe, S.
Deposit date:2020-05-01
Release date:2020-08-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily.
Biochemistry, 59, 2020
5ZJM
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BU of 5zjm by Molmil
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum
Descriptor: 1,2-ETHANEDIOL, N-acetylneuraminate lyase
Authors:Kumar, J.P, Rao, H, Nayak, V, Subramanian, R.
Deposit date:2018-03-21
Release date:2019-01-23
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.323 Å)
Cite:Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun, 74, 2018
5ZKA
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BU of 5zka by Molmil
Crystal structure of N-acetylneuraminate lyase from Fusobacterium nucleatum complexed with Pyruvate
Descriptor: 1,2-ETHANEDIOL, N-acetylneuraminate lyase, TRIETHYLENE GLYCOL
Authors:Kumar, J.P, Rao, H, Nayak, V, Ramaswamy, S.
Deposit date:2018-03-23
Release date:2018-12-05
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Crystal structures and kinetics of N-acetylneuraminate lyase from Fusobacterium nucleatum
Acta Crystallogr F Struct Biol Commun, 74, 2018
1S5T
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BU of 1s5t by Molmil
Crystal Structure Analysis of a mutant of DIHYDRODIPICOLINATE SYNTHASE--residue thr44 to val44
Descriptor: Dihydrodipicolinate synthase
Authors:Dobson, R.C.J, Valegard, K, Gerrard, J.A.
Deposit date:2004-01-21
Release date:2004-04-27
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Crystal Structure of Three Site-directed Mutants of Escherichia coli Dihydrodipicolinate Synthase: Further Evidence for a Catalytic Triad
J.MOL.BIOL., 338, 2004
5UD6
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Crystal structure of DHDPS from Cyanidioschyzon merolae with lysine bound
Descriptor: CALCIUM ION, Dihydrodipicolinate synthase, LYSINE
Authors:Watkin, S, Keown, J.R, Pearce, F.G.
Deposit date:2016-12-23
Release date:2017-12-27
Last modified:2018-12-05
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of DHDPS from Cyanidioschyzon merolae with lysine bound
To Be Published

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