PhdJ bound to substrate intermediate

Summary for 6DAQ

DescriptorPhdJ (3 entities in total)
Functional Keywordsaldolase, lyase
Biological sourceMycobacterium vanbaalenii
Total number of polymer chains4
Total molecular weight144795.34
Medellin, B.P.,LeVieux, J.A.,Zhang, Y.J.,Whitman, C.P. (deposition date: 2018-05-01, release date: 2019-04-10, Last modification date: 2020-01-01)
Primary citation
LeVieux, J.A.,Medellin, B.,Johnson Jr., W.H.,Erwin, K.,Li, W.,Johnson, I.A.,Zhang, Y.J.,Whitman, C.P.
Structural Characterization of the Hydratase-Aldolases, NahE and PhdJ: Implications for the Specificity, Catalysis, and N-Acetylneuraminate Lyase Subgroup of the Aldolase Superfamily.
Biochemistry, 57:3524-3536, 2018
PubMed: 29856600 (PDB entries with the same primary citation)
DOI: 10.1021/acs.biochem.8b00532
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.1954 0.1% 0.5% 0.5%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution
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PDB entries from 2020-07-29