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PDB: 9 results
6KBX
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BU of 6kbx by Molmil
Crystal structure of yedK in complex with ssDNA containing abasic site
Descriptor: DNA 5'-D (*CP*GP*GP*TP* (PED)P*GP*AP*TP*TP*C)-3', SOS response-associated protein
Authors:Wang, N, Bao, H, Huang, H.
Deposit date:2019-06-26
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.221 Å)
Cite:Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
Nucleic Acids Res., 47, 2019
6KIJ
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BU of 6kij by Molmil
Crystal structure of yedK with ssDNA containing an abasic site
Descriptor: DNA (5'-D(*GP*AP*TP*TP*CP*GP*TP*CP*G)-3'), GLYCEROL, PENTANE-3,4-DIOL-5-PHOSPHATE, ...
Authors:Wang, N, Bao, H, Huang, H.
Deposit date:2019-07-18
Release date:2019-08-07
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
Nucleic Acids Res., 47, 2019
6NUH
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BU of 6nuh by Molmil
Non-covalent DNA-protein complex between E. coli YedK and ssDNA containing an abasic site analog
Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA (5'-D(*GP*TP*CP*(PDI)P*GP*GP*A)-3'), SOS response-associated peptidase YedK
Authors:Eichman, B.F, Amidon, K.M.
Deposit date:2019-02-01
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.594 Å)
Cite:Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link.
Nat.Struct.Mol.Biol., 26, 2019
2ICU
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BU of 2icu by Molmil
Crystal Structure of Hypothetical Protein YedK From Escherichia coli
Descriptor: Hypothetical protein yedK
Authors:Chen, L, Liu, Z.J, Li, Y, Zhao, M, Rose, J, Ebihara, A, Yokoyama, S, Wang, B.C, Southeast Collaboratory for Structural Genomics (SECSG), RIKEN Structural Genomics/Proteomics Initiative, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-09-13
Release date:2006-11-07
Last modified:2018-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal Structure of Hypothetical Protein YedK From Escherichia coli
To be Published
6NUA
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BU of 6nua by Molmil
DNA-protein crosslink between E. coli YedK and ssDNA containing an abasic site
Descriptor: DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3'), SOS response-associated peptidase YedK
Authors:Eichman, B.F, Amidon, K.M.
Deposit date:2019-01-31
Release date:2019-06-26
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Protection of abasic sites during DNA replication by a stable thiazolidine protein-DNA cross-link.
Nat.Struct.Mol.Biol., 26, 2019
6KBZ
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BU of 6kbz by Molmil
Crystal structure of yedK with ssDNA containing a tetrahydrofuran abasic site
Descriptor: 5'-D (*CP*GP*GP*TP* (3DR) P*GP*AP*TP*TP*C)-3', MAGNESIUM ION, SOS response-associated protein
Authors:Wang, N, Bao, H, Huang, H.
Deposit date:2019-06-26
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.653 Å)
Cite:Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
Nucleic Acids Res., 47, 2019
6KCQ
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BU of 6kcq by Molmil
Crystal structure of yedK with ssDNA containing an abasic site
Descriptor: DNA (5'-D(P*AP*AP*AP*(PED)P*AP*A)-3'), SOS response-associated protein
Authors:Wang, N, Bao, H, Huang, H.
Deposit date:2019-06-28
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (1.701 Å)
Cite:Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
Nucleic Acids Res., 47, 2019
8D2M
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BU of 8d2m by Molmil
Covalent Schiff base complex of YedK C2A and abasic DNA
Descriptor: Abasic site processing protein YedK, DNA (5'-D(*GP*TP*CP*(PED)P*GP*GP*A)-3')
Authors:Eichman, B.F, Paulin, K.A.
Deposit date:2022-05-30
Release date:2023-04-12
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.821 Å)
Cite:The SOS response-associated peptidase (SRAP) domain of YedK catalyzes ring opening of abasic sites and reversal of its DNA-protein cross-link.
J.Biol.Chem., 298, 2022
6KBU
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BU of 6kbu by Molmil
Crystal structure of yedK
Descriptor: GLYCEROL, SOS response-associated protein
Authors:Wang, N, Bao, H, Huang, H.
Deposit date:2019-06-26
Release date:2019-07-10
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK.
Nucleic Acids Res., 47, 2019

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