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PDB: 558 results

6PFR
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BU of 6pfr by Molmil
rsEGFP2 with a chlorinated chromophore in the fluorescent on-state
Descriptor: Green fluorescent protein
Authors:Chang, J, Romei, M.G, Boxer, S.G.
Deposit date:2019-06-22
Release date:2019-08-07
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Structural Evidence of Photoisomerization Pathways in Fluorescent Proteins.
J.Am.Chem.Soc., 141, 2019
3DQ8
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BU of 3dq8 by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1500 Atmospheres Number 2: Structure 16 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3DQJ
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BU of 3dqj by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1000 Atmospheres Number 3: Structure 7 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.51 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
3SV5
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BU of 3sv5 by Molmil
Engineered medium-affinity halide-binding protein derived from YFP: iodide complex
Descriptor: 1,2-ETHANEDIOL, FORMIC ACID, Green fluorescent protein, ...
Authors:Wang, W, Grimley, J.S, Beese, L.S, Hellinga, H.W.
Deposit date:2011-07-12
Release date:2012-07-18
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Visualization of Synaptic Inhibition with an Optogenetic Sensor Developed by Cell-Free Protein Engineering Automation.
J.Neurosci., 33, 2013
5MAD
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BU of 5mad by Molmil
GFP-binding DARPin 3G61
Descriptor: 3G61, DI(HYDROXYETHYL)ETHER, Green fluorescent protein, ...
Authors:Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-12-06
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
5N9O
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BU of 5n9o by Molmil
EGFP(enhanced green fluorescent protein) mutant - L232H
Descriptor: 3,6,9,12,15-PENTAOXAHEPTADECAN-1-OL, Green fluorescent protein
Authors:Kachalova, G.S, Popov, A.P, Simanovskaya, A.A, Krukova, M.V, Lipkin, A.V.
Deposit date:2017-02-26
Release date:2018-03-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Structure of EGFP(enhanced green fluorescent protein) mutant - L232H at 0.153 nm
To Be Published
8OVY
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BU of 8ovy by Molmil
Structure of analogue of superfolded GFP
Descriptor: Green fluorescent protein
Authors:Dunkelmann, D, Fiedler, M, Bellini, D, Alvira, C.P, Chin, J.W.
Deposit date:2023-04-26
Release date:2024-01-10
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.537 Å)
Cite:Adding alpha , alpha-disubstituted and beta-linked monomers to the genetic code of an organism.
Nature, 625, 2024
7O7C
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BU of 7o7c by Molmil
Crystal structure of rsEGFP2 mutant V151A in the non-fluorescent off-state determined by synchrotron radiation at 100K
Descriptor: Green fluorescent protein, SULFATE ION
Authors:Woodhouse, J, Adam, V, Hadjidemetriou, K, Colletier, J.-P, Weik, M.
Deposit date:2021-04-13
Release date:2022-07-27
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Rational Control of Off-State Heterogeneity in a Photoswitchable Fluorescent Protein Provides Switching Contrast Enhancement.
Chemphyschem, 23, 2022
7A7K
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BU of 7a7k by Molmil
rsEGFP in the green-on state
Descriptor: Green fluorescent protein, SULFATE ION
Authors:De Zitter, E, Dedecker, P, Van Meervelt, L.
Deposit date:2020-08-30
Release date:2021-02-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structure-Function Dataset Reveals Environment Effects within a Fluorescent Protein Model System*.
Angew.Chem.Int.Ed.Engl., 60, 2021
4IK8
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BU of 4ik8 by Molmil
High resolution structure of GCaMP3 dimer form 1 at pH 7.5
Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein
Authors:Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G.
Deposit date:2012-12-25
Release date:2014-02-05
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement.
Protein Cell, 4, 2013
1Q4C
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BU of 1q4c by Molmil
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 8.5
Descriptor: Green Fluorescent Protein
Authors:Jain, R.K, Ranganathan, R.
Deposit date:2003-08-02
Release date:2004-02-03
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
5OX9
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BU of 5ox9 by Molmil
Structure of the Cyan Fluorescent Protein SCFP3A at pH 4.5
Descriptor: CHLORIDE ION, Green fluorescent protein
Authors:Gotthard, G, von Stetten, D, Clavel, D, Noirclerc-Savoye, M, Royant, A.
Deposit date:2017-09-06
Release date:2017-11-29
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Chromophore Isomer Stabilization Is Critical to the Efficient Fluorescence of Cyan Fluorescent Proteins.
Biochemistry, 56, 2017
5MA9
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BU of 5ma9 by Molmil
GFP-binding DARPin fusion gc_R11
Descriptor: 1,2-ETHANEDIOL, Green fluorescent protein, R11
Authors:Hansen, S, Stueber, J, Ernst, P, Koch, A, Bojar, D, Batyuk, A, Plueckthun, A.
Deposit date:2016-11-03
Release date:2017-11-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Design and applications of a clamp for Green Fluorescent Protein with picomolar affinity.
Sci Rep, 7, 2017
8IZ2
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BU of 8iz2 by Molmil
Single excitation and two emissions pH sensor protein (SITE-pHorin)_C203E_pH8.0
Descriptor: Green fluorescent protein
Authors:Kang, J.S, Li, S.A.
Deposit date:2023-04-06
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.572 Å)
Cite:A unified intracellular pH spectrum with sitepHorin-a quantum-entanglement-based pH-sensitive and ratiometric fluorescent protein
To Be Published
1Q4D
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BU of 1q4d by Molmil
S65T Q80R T203C Green Fluorescent Protein (GFP) pH 5.5
Descriptor: Green Fluorescent Protein
Authors:Jain, R.K, Ranganathan, R.
Deposit date:2003-08-02
Release date:2004-02-03
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Local complexity of amino acid interactions in a protein core.
Proc.Natl.Acad.Sci.USA, 101, 2004
4KA9
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BU of 4ka9 by Molmil
Crystal structure analysis of single amino acid deletion mutations in EGFP
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Green fluorescent protein, ...
Authors:Arpino, J.A.J, Rizkallah, P.J.
Deposit date:2013-04-22
Release date:2014-05-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Random single amino acid deletion sampling unveils structural tolerance and the benefits of helical registry shift on GFP folding and structure.
Structure, 22, 2014
2YDZ
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BU of 2ydz by Molmil
X-ray structure of the cyan fluorescent protein SCFP3A (K206A mutant)
Descriptor: GREEN FLUORESCENT PROTEIN
Authors:von Stetten, D, Goedhart, J, Noirclerc-Savoye, M, Lelimousin, M, Joosen, L, Hink, M.A, van Weeren, L, Gadella, T.W.J, Royant, A.
Deposit date:2011-03-25
Release date:2012-03-21
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Structure-Guided Evolution of Cyan Fluorescent Proteins Towards a Quantum Yield of 93%
Nat.Commun, 3, 2012
9F23
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BU of 9f23 by Molmil
DARPin eGFP complex DP2 (2G156)
Descriptor: (2S)-1-[3-{[(2R)-2-hydroxypropyl]oxy}-2,2-bis({[(2R)-2-hydroxypropyl]oxy}methyl)propoxy]propan-2-ol, 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ...
Authors:Mittl, P.R, Hansen, S.
Deposit date:2024-04-22
Release date:2024-10-23
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:DARPin eGFP complex DP2 (2G156)
To Be Published
3DPW
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BU of 3dpw by Molmil
Structure of the Yellow Fluorescent Protein Citrine Frozen at 1 Atmosphere Number 1: Structure 1 in a Series of 26 High Pressure Structures
Descriptor: Green fluorescent protein
Authors:Barstow, B, Kim, C.U.
Deposit date:2008-07-09
Release date:2008-09-23
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Alteration of citrine structure by hydrostatic pressure explains the accompanying spectral shift.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2QLE
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BU of 2qle by Molmil
GFP/S205V mutant
Descriptor: Green fluorescent protein, IMIDAZOLE
Authors:Shu, X, Remington, S.J.
Deposit date:2007-07-12
Release date:2008-02-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:An alternative excited-state proton transfer pathway in green fluorescent protein variant S205V.
Protein Sci., 16, 2007
6DQ1
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BU of 6dq1 by Molmil
sfGFP N149 mutated to 4-nitro-L-phenylalanine
Descriptor: SODIUM ION, sfGFP
Authors:Phillips-Piro, C.M, Savidge, N, Lee, B.
Deposit date:2018-06-10
Release date:2018-10-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.598 Å)
Cite:Crystal structures of green fluorescent protein with the unnatural amino acid 4-nitro-L-phenylalanine.
Acta Crystallogr F Struct Biol Commun, 74, 2018
6OG8
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BU of 6og8 by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Descriptor: Crystal structure of Green Fluorescent Protein (GFP); S65T, H148D with globally incorporated 3-F1Y; circular permutant (50-51)
Authors:Lin, C.-Y, Deng, A, Boxer, S.G.
Deposit date:2019-04-01
Release date:2020-04-08
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
6T39
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BU of 6t39 by Molmil
Crystal structure of rsEGFP2 in its off-state determined by SFX
Descriptor: Green fluorescent protein
Authors:Woodhouse, J, Coquelle, N, Adam, V, Barends, T.R.M, De La Mora, E, Bourgeois, D, Colletier, J.P, Schlichting, I, Weik, M.
Deposit date:2019-10-10
Release date:2020-02-19
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Photoswitching mechanism of a fluorescent protein revealed by time-resolved crystallography and transient absorption spectroscopy.
Nat Commun, 11, 2020
6OGA
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BU of 6oga by Molmil
Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3-Br1Y), H148D; circular permutant (50-51)
Descriptor: ACETATE ION, Crystal structure of Green Fluorescent Protein (GFP); S65T, Y66(3-Br1Y), ...
Authors:Lin, C.-Y, Boxer, S.G.
Deposit date:2019-04-02
Release date:2020-04-08
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Unusual Spectroscopic and Electric Field Sensitivity of Chromophores with Short Hydrogen Bonds: GFP and PYP as Model Systems.
J.Phys.Chem.B, 124, 2020
2HGD
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BU of 2hgd by Molmil
Structure of S65A Y66F GFP variant with an oxidized chromophore
Descriptor: Green fluorescent protein
Authors:Barondeau, D.P, Kassmann, C.J, Tainer, J.A, Getzoff, E.D.
Deposit date:2006-06-26
Release date:2007-03-27
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Case of the Missing Ring: Radical Cleavage of a Carbon-Carbon Bond and Implications for GFP Chromophore Biosynthesis
J.Am.Chem.Soc., 129, 2007

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