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PDB: 11 results

4J7N
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BU of 4j7n by Molmil
Crystal structure of mouse DXO in complex with M7GPPPG cap
Descriptor: 1,2-ETHANEDIOL, 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE, 9-METHYLGUANINE, ...
Authors:Kilic, T, Chang, J.H, Tong, L.
Deposit date:2013-02-13
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing.
Mol.Cell, 50, 2013
6WUK
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BU of 6wuk by Molmil
Crystal structure of mouse DXO in complex with CoA
Descriptor: COENZYME A, Decapping and exoribonuclease protein
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.599 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
6WUF
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BU of 6wuf by Molmil
Crystal structure of mouse DXO in complex with 3'-FADP
Descriptor: 1,2-ETHANEDIOL, Decapping and exoribonuclease protein, [(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]methyl (2R,3S,4S)-5-(7,8-dimethyl-2,4-dioxo-3,4-dihydrobenzo[g]pteridin-10(2H)-yl)-2,3,4-trihydroxypentyl dihydrogen diphosphate (non-preferred name)
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-05-04
Release date:2020-05-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DXO/Rai1 enzymes remove 5'-end FAD and dephospho-CoA caps on RNAs.
Nucleic Acids Res., 48, 2020
4J7M
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BU of 4j7m by Molmil
Crystal structure of mouse DXO in complex with substrate mimic RNA and calcium ion
Descriptor: CALCIUM ION, Protein Dom3Z, RNA (5'-R(P*UP*(U37)P*(U37)P*UP*U)-3'), ...
Authors:Chang, J.H, Tong, L.
Deposit date:2013-02-13
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing.
Mol.Cell, 50, 2013
6AIX
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BU of 6aix by Molmil
Crystal structure of DXO in complex with adenosine 3', 5' bisphosphate and two magnesium ions
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Decapping and exoribonuclease protein, MAGNESIUM ION
Authors:Chang, J.H, Tong, L.
Deposit date:2018-08-25
Release date:2018-10-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Molecular mechanism for the inhibition of DXO by adenosine 3',5'-bisphosphate.
Biochem. Biophys. Res. Commun., 504, 2018
4J7L
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BU of 4j7l by Molmil
Crystal structure of mouse DXO in complex with PRODUCT RNA AND two MAGNESIUM ions
Descriptor: MAGNESIUM ION, Protein Dom3Z, RNA (5'-R(P*UP*UP*UP*UP*U)-3'), ...
Authors:Chang, J.H, Tong, L.
Deposit date:2013-02-13
Release date:2013-03-27
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A mammalian pre-mRNA 5' end capping quality control mechanism and an unexpected link of capping to pre-mRNA processing.
Mol.Cell, 50, 2013
6AIY
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BU of 6aiy by Molmil
Crystal structure of DXO (E234A mutant) in complex with adenosine 3', 5' bisphosphate and two magnesium ions
Descriptor: ADENOSINE-3'-5'-DIPHOSPHATE, Decapping and exoribonuclease protein, MAGNESIUM ION
Authors:Chang, J.H, Tong, L.
Deposit date:2018-08-25
Release date:2018-10-17
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.902 Å)
Cite:Molecular mechanism for the inhibition of DXO by adenosine 3',5'-bisphosphate.
Biochem. Biophys. Res. Commun., 504, 2018
6WRE
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BU of 6wre by Molmil
Crystal structure of mouse DXO in complex with 5'-OH RNA substrate mimic and calcium ion
Descriptor: 3'-URIDINEMONOPHOSPHATE, CALCIUM ION, Decapping and exoribonuclease protein, ...
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2020-04-29
Release date:2020-05-13
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2 Å)
Cite:A novel 5'-hydroxyl dinucleotide hydrolase activity for the DXO/Rai1 family of enzymes.
Nucleic Acids Res., 48, 2020
3FQI
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BU of 3fqi by Molmil
Crystal Structure of the Mouse Dom3Z
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, MAGNESIUM ION, Protein Dom3Z
Authors:Xiang, S, Tong, L.
Deposit date:2009-01-07
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.013 Å)
Cite:Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Nature, 458, 2009
5ULI
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BU of 5uli by Molmil
Crystal Structure of mouse DXO in complex with (3'-NADP)+ and calcium ion
Descriptor: CALCIUM ION, Decapping and exoribonuclease protein, [[(2R,3S,4R,5R)-5-(3-aminocarbonyl-4H-pyridin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methyl hydrogen phosphate
Authors:Doamekpor, S.K, Tong, L.
Deposit date:2017-01-24
Release date:2017-05-17
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:5' End Nicotinamide Adenine Dinucleotide Cap in Human Cells Promotes RNA Decay through DXO-Mediated deNADding.
Cell, 168, 2017
3FQJ
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BU of 3fqj by Molmil
Crystal Structure of the Mouse Dom3Z in Complex with GDP
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Protein Dom3Z
Authors:Xiang, S, Tong, L.
Deposit date:2009-01-07
Release date:2009-02-03
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.623 Å)
Cite:Structure and function of the 5'-->3' exoribonuclease Rat1 and its activating partner Rai1.
Nature, 458, 2009

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