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PDB: 39 results

3V4K
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First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ...
Authors:Shandilya, S.M.D, Ali, A, Schiffer, C.A.
Deposit date:2011-12-15
Release date:2012-01-25
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.38 Å)
Cite:First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G.
Acs Chem.Biol., 7, 2012
7UXD
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BU of 7uxd by Molmil
Crystal structure of APOBEC3G Catalytic domain complex with ssDNA containing 2'-deoxy Zebularine.
Descriptor: DNA (5'-D(*AP*AP*TP*CP*CP*(DDN)P*AP*AP*A)-3'), DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Maiti, A, Matsuo, H.
Deposit date:2022-05-05
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structure of the catalytically active APOBEC3G bound to a DNA oligonucleotide inhibitor reveals tetrahedral geometry of the transition state.
Nat Commun, 13, 2022
5USB
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BU of 5usb by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGGTTACGGT)
Descriptor: G1R_9mer DNA/RNA (5'-R(*G)-D(P*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Lloyd, N.R, Wuttke, D.S.
Deposit date:2017-02-13
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.615 Å)
Cite:Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure, 26, 2018
4HIK
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BU of 4hik by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGGT)
Descriptor: DNA (5'-D(*GP*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-11
Release date:2012-12-12
Last modified:2017-11-15
Method:X-RAY DIFFRACTION (1.636 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4ROW
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BU of 4row by Molmil
The crystal structure of novel APOBEC3G CD2 head-to-tail dimer suggests the binding mode of full-length APOBEC3G to HIV-1 ssDNA
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Lu, X, Zhang, T, Xu, Z, Liu, S, Zhao, B, Lan, W, Wang, C, Ding, J, Cao, C.
Deposit date:2014-10-29
Release date:2014-12-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of DNA cytidine deaminase ABOBEC3G catalytic deamination domain suggests a binding mode of full-length enzyme to single-stranded DNA
J.Biol.Chem., 290, 2015
4HIM
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BU of 4him by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGATACGGT)
Descriptor: DNA (5'-D(*GP*GP*AP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-11
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4HIO
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BU of 4hio by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTAACGGT)
Descriptor: DNA (5'-D(*GP*GP*TP*AP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, McKercher, M.A, Wuttke, D.S.
Deposit date:2012-10-11
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.753 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4HJ7
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BU of 4hj7 by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTAGGGT)
Descriptor: DNA (5'-D(*GP*GP*TP*TP*AP*GP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-12
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4ROV
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BU of 4rov by Molmil
The crystal structure of novel APOBEC3G CD2 head-to-tail dimer suggests the binding mode of full-length APOBEC3G to HIV-1 ssDNA
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Lu, X, Zhang, T, Xu, Z, Liu, S, Zhao, B, Lan, W, Wang, C, Ding, J, Cao, C.
Deposit date:2014-10-29
Release date:2014-12-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of DNA cytidine deaminase ABOBEC3G catalytic deamination domain suggests a binding mode of full-length enzyme to single-stranded DNA
J.Biol.Chem., 290, 2015
4HID
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BU of 4hid by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GCTTACGGT)
Descriptor: DNA (5'-D(*GP*CP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-11
Release date:2012-12-12
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.822 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4HJ9
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BU of 4hj9 by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (CGGTTACGGT)
Descriptor: DNA (5'-D(*CP*GP*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-12
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
6BUX
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BU of 6bux by Molmil
CRYSTAL STRUCTURE OF APOBEC3G CATALYTIC DOMAIN COMPLEX WITH SUBSTRATE SSDNA
Descriptor: Apolipoprotein B mRNA editing enzyme catalytic subunit 3G catalytic domain, DNA (5'-D(*AP*AP*TP*CP*CP*CP*AP*AP*A)-3'), GLYCEROL, ...
Authors:Maiti, A, Matsuo, H.
Deposit date:2017-12-11
Release date:2018-07-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Crystal structure of the catalytic domain of HIV-1 restriction factor APOBEC3G in complex with ssDNA.
Nat Commun, 9, 2018
6NFK
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BU of 6nfk by Molmil
Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B with loop 7 from APOBEC3G bound to iodide
Descriptor: 1,2-ETHANEDIOL, DNA dC->dU-editing enzyme APOBEC-3B, IODIDE ION
Authors:Shi, K, Orellana, K, Aihara, H.
Deposit date:2018-12-20
Release date:2019-12-25
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Active site plasticity and possible modes of chemical inhibition of the human DNA deaminase APOBEC3B
Faseb Bioadv, 2, 2020
1QZG
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BU of 1qzg by Molmil
Crystal structure of Pot1 (protection of telomere)- ssDNA complex
Descriptor: Protection of telomeres protein 1, THYMIDINE-5'-PHOSPHATE, telomeric single-stranded DNA
Authors:Lei, M, Podell, E.R, Baumann, P, Cech, T.R.
Deposit date:2003-09-16
Release date:2003-11-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:DNA self-recognition in the structure of Pot1 bound to telomeric single-stranded DNA
Nature, 426, 2003
5USN
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BU of 5usn by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (rGrGrUTACGGT)
Descriptor: 1-3R_9mer DNA/RNA (5'-R(*GP*GP*U)-D(P*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1, SODIUM ION
Authors:Lloyd, N.R, Wuttke, D.S.
Deposit date:2017-02-13
Release date:2018-04-18
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure, 26, 2018
5USO
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BU of 5uso by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssRNA/ssDNA chimera (GGTTACrGrGrU)
Descriptor: 7-9R_9mer DNA/RNA (5'-D(*GP*GP*TP*TP*AP*C)-R(P*GP*GP*U)-3'), Protection of telomeres protein 1
Authors:Lloyd, N.R, Wuttke, D.S.
Deposit date:2017-02-13
Release date:2018-04-18
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Discrimination against RNA Backbones by a ssDNA Binding Protein.
Structure, 26, 2018
5ZVB
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BU of 5zvb by Molmil
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dT9)
Descriptor: APEBEC3F/ssDNA-T9, CACODYLATE ION, DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*T)-3'), ...
Authors:Cheng, C, Zhang, T.L, Wang, C.X, Lan, W.X, Ding, J.P, Cao, C.Y.
Deposit date:2018-05-09
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem., 36, 2018
3V4J
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BU of 3v4j by Molmil
First-In-Class Small Molecule Inhibitors of the Single-strand DNA Cytosine Deaminase APOBEC3G
Descriptor: 4-[methyl(nitroso)amino]benzene-1,2-diol, DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Shandilya, S.M.D, Ali, A, Schiffer, C.A.
Deposit date:2011-12-15
Release date:2012-02-01
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:First-In-Class Small Molecule Inhibitors of the Single-Strand DNA Cytosine Deaminase APOBEC3G.
Acs Chem.Biol., 7, 2012
4HJ5
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BU of 4hj5 by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTTCGGT)
Descriptor: DNA (5'-D(*GP*GP*TP*TP*TP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-12
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4HJ8
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BU of 4hj8 by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (GGTTACGCT)
Descriptor: DNA (5'-D(*GP*GP*TP*TP*AP*CP*GP*CP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-12
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.043 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
4HJA
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BU of 4hja by Molmil
Crystal Structure of Schizosaccharomyces pombe Pot1pC bound to ssDNA (ACGGTTACGGT)
Descriptor: DNA (5'-D(*AP*CP*GP*GP*TP*TP*AP*CP*GP*GP*T)-3'), Protection of telomeres protein 1
Authors:Dickey, T.H, Wuttke, D.S.
Deposit date:2012-10-12
Release date:2012-12-12
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Nonspecific Recognition Is Achieved in Pot1pC through the Use of Multiple Binding Modes.
Structure, 21, 2013
3IR2
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BU of 3ir2 by Molmil
Crystal structure of the APOBEC3G catalytic domain
Descriptor: CHLORIDE ION, DNA dC->dU-editing enzyme APOBEC-3G, MAGNESIUM ION, ...
Authors:Shandilya, S.M.D, Schiffer, C.A.
Deposit date:2009-08-21
Release date:2010-01-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Crystal Structure of the APOBEC3G Catalytic Domain Reveals Potential Oligomerization Interfaces.
Structure, 18, 2010
5ZVA
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BU of 5zva by Molmil
APOBEC3F Chimeric Catalytic Domain in Complex with DNA(dC9)
Descriptor: APEBEC3F/ssDNA-C9, CACODYLATE ION, DNA (5'-D(*AP*TP*TP*TP*TP*CP*AP*AP*CP*T)-3'), ...
Authors:Cheng, C, Zhang, T.L, Wang, C.X, Lan, W.X, Ding, J.P, Cao, C.Y.
Deposit date:2018-05-09
Release date:2018-11-21
Last modified:2018-11-28
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal Structure of Cytidine Deaminase Human APOBEC3F Chimeric Catalytic Domain in Complex with DNA
Chin.J.Chem., 36, 2018
3IQS
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BU of 3iqs by Molmil
Crystal structure of the anti-viral APOBEC3G catalytic domain
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Holden, L.G, Prochnow, C, Chang, Y.P, Bransteitter, R, Chelico, L, Sen, U, Stevens, R.C, Goodman, R.F, Chen, X.S.
Deposit date:2009-08-20
Release date:2009-11-10
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications.
Nature, 456, 2008
3E1U
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BU of 3e1u by Molmil
The Crystal Structure of the Anti-Viral APOBEC3G Catalytic Domain
Descriptor: DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION
Authors:Holden, L, Prochnow, C, Chang, Y.P, Bransteitter, R, Chelico, L, Sen, U, Stevens, R.C, Goodman, R.F, Chen, X.S.
Deposit date:2008-08-04
Release date:2008-10-07
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structure of the anti-viral APOBEC3G catalytic domain and functional implications.
Nature, 456, 2008

 

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