1ETF
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![BU of 1etf by Molmil](/molmil-images/mine/1etf) | REV RESPONSE ELEMENT (RRE) RNA COMPLEXED WITH REV PEPTIDE, NMR, MINIMIZED AVERAGE STRUCTURE | Descriptor: | REV PEPTIDE, REV RESPONSE ELEMENT RNA | Authors: | Battiste, J.L, Mao, H, Rao, N.S, Tan, R, Muhandiram, D.R, Kay, L.E, Frankel, A.D, Willamson, J.R. | Deposit date: | 1996-08-28 | Release date: | 1997-03-12 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science, 273, 1996
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8TQX
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8TSV
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7LYJ
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![BU of 7lyj by Molmil](/molmil-images/mine/7lyj) | SARS-CoV-2 frameshifting pseudoknot RNA | Descriptor: | IRIDIUM HEXAMMINE ION, MAGNESIUM ION, POTASSIUM ION, ... | Authors: | Jones, C.P, Ferre-D'Amare, A.R. | Deposit date: | 2021-03-07 | Release date: | 2021-05-26 | Last modified: | 2024-05-22 | Method: | X-RAY DIFFRACTION (2.11 Å) | Cite: | Crystal structure of the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) frameshifting pseudoknot. Rna, 28, 2022
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6Z9U
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![BU of 6z9u by Molmil](/molmil-images/mine/6z9u) | Crystal structure of a TSEN15-34 heterodimer. | Descriptor: | GLYCEROL, tRNA-splicing endonuclease subunit Sen15, tRNA-splicing endonuclease subunit Sen34 | Authors: | Trowitzsch, S, Sekulovski, S. | Deposit date: | 2020-06-04 | Release date: | 2021-06-30 | Last modified: | 2024-01-24 | Method: | X-RAY DIFFRACTION (2.10001779 Å) | Cite: | Assembly defects of human tRNA splicing endonuclease contribute to impaired pre-tRNA processing in pontocerebellar hypoplasia. Nat Commun, 12, 2021
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5J2W
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![BU of 5j2w by Molmil](/molmil-images/mine/5j2w) | Intermediate state lying on the pathway of release of Tat from HIV-1 TAR. | Descriptor: | Apical region (29mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat | Authors: | Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M. | Deposit date: | 2016-03-30 | Release date: | 2016-06-08 | Last modified: | 2019-10-23 | Method: | SOLUTION NMR | Cite: | Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
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5J0M
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![BU of 5j0m by Molmil](/molmil-images/mine/5j0m) | Ground state sampled during RDC restrained Replica-averaged Metadynamics (RAM) simulations of the HIV-1 TAR complexed with cyclic peptide mimetic of Tat | Descriptor: | Apical region (29-mer) of the HIV-1 TAR RNA element, Cyclic peptide mimetic of HIV-1 Tat | Authors: | Borkar, A.N, Bardaro Jr, M.F, Varani, G, Vendruscolo, M. | Deposit date: | 2016-03-28 | Release date: | 2016-06-08 | Last modified: | 2019-10-23 | Method: | SOLUTION NMR | Cite: | Structure of a low-population binding intermediate in protein-RNA recognition. Proc.Natl.Acad.Sci.USA, 113, 2016
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1Y2Y
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![BU of 1y2y by Molmil](/molmil-images/mine/1y2y) | Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy | Descriptor: | Ribosome biogenesis protein Nop10 | Authors: | Khanna, M, Wu, H, Johansson, C, Caizergues-Ferrer, M, Feigon, J. | Deposit date: | 2004-11-23 | Release date: | 2005-12-06 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural study of the H/ACA snoRNP components Nop10p and the 3' hairpin of U65 snoRNA RNA, 12, 2006
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4PMI
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![BU of 4pmi by Molmil](/molmil-images/mine/4pmi) | Crystal structure of Rev and Rev-response-element RNA complex | Descriptor: | PHOSPHATE ION, Protein Rev, Rev-Response-Element RNA | Authors: | Jayaraman, B, Crosby, D.C, Homer, C, Ribeiro, I, Mavor, D, Frankel, A.D. | Deposit date: | 2014-05-21 | Release date: | 2014-12-24 | Last modified: | 2023-09-27 | Method: | X-RAY DIFFRACTION (3.2 Å) | Cite: | RNA-directed remodeling of the HIV-1 protein Rev orchestrates assembly of the Rev-Rev response element complex. Elife, 4, 2014
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4RMO
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![BU of 4rmo by Molmil](/molmil-images/mine/4rmo) | Crystal Structure of the CptIN Type III Toxin-Antitoxin System from Eubacterium rectale | Descriptor: | CALCIUM ION, CptN Toxin, RNA (45-MER) | Authors: | Rao, F, Voss, J.E, Short, F.L, Luisi, B.F. | Deposit date: | 2014-10-21 | Release date: | 2015-09-30 | Last modified: | 2015-11-18 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Co-evolution of quaternary organization and novel RNA tertiary interactions revealed in the crystal structure of a bacterial protein-RNA toxin-antitoxin system. Nucleic Acids Res., 43, 2015
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6GPG
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![BU of 6gpg by Molmil](/molmil-images/mine/6gpg) | Structure of the RIG-I Singleton-Merten syndrome variant C268F | Descriptor: | MAGNESIUM ION, Probable ATP-dependent RNA helicase DDX58, RNA (5'-R(*CP*GP*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*CP*G)-3'), ... | Authors: | Laessig, C, Lammens, K, Hopfner, K.-P. | Deposit date: | 2018-06-05 | Release date: | 2018-08-08 | Last modified: | 2024-05-15 | Method: | X-RAY DIFFRACTION (2.894 Å) | Cite: | Unified mechanisms for self-RNA recognition by RIG-I Singleton-Merten syndrome variants. Elife, 7, 2018
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8PZQ
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![BU of 8pzq by Molmil](/molmil-images/mine/8pzq) | Model for focused reconstruction of influenza A RNP-like particle | Descriptor: | Nucleoprotein, RNA (5'P-(UC)6-FAM3') | Authors: | Chenavier, F, Estrozi, L.F, Zarkadas, E, Ruigrok, R.W.H, Schoehn, G, Ballandras-Colas, A, Crepin, T. | Deposit date: | 2023-07-27 | Release date: | 2023-12-27 | Method: | ELECTRON MICROSCOPY (5.3 Å) | Cite: | Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation. Sci Adv, 9, 2023
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8PZP
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![BU of 8pzp by Molmil](/molmil-images/mine/8pzp) | Model for influenza A virus helical ribonucleoprotein-like structure | Descriptor: | Nucleoprotein, RNA (5'P-(UC)6-FAM3') | Authors: | Chenavier, F, Estrozi, L.F, Zarkadas, E, Ruigrok, R.W.H, Schoehn, G, Ballandras-Colas, A, Crepin, T. | Deposit date: | 2023-07-27 | Release date: | 2023-12-27 | Method: | ELECTRON MICROSCOPY (8.7 Å) | Cite: | Cryo-EM structure of influenza helical nucleocapsid reveals NP-NP and NP-RNA interactions as a model for the genome encapsidation. Sci Adv, 9, 2023
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1Q8N
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![BU of 1q8n by Molmil](/molmil-images/mine/1q8n) | Solution Structure of the Malachite Green RNA Binding Aptamer | Descriptor: | MALACHITE GREEN, RNA Aptamer | Authors: | Flinders, J, DeFina, S.C, Brackett, D.M, Baugh, C, Wilson, C, Dieckmann, T. | Deposit date: | 2003-08-21 | Release date: | 2004-03-23 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Recognition of planar and nonplanar ligands in the malachite green-RNA aptamer complex. Chembiochem, 5, 2004
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1CX5
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![BU of 1cx5 by Molmil](/molmil-images/mine/1cx5) | ANTISENSE DNA/RNA HYBRID CONTAINING MODIFIED BACKBONE | Descriptor: | 5'-D(*CP*GP*CP*GP*TP*T*(MMT)P*TP*GP*CP*GP*C), 5'-R(*GP*CP*GP*CP*AP*AP*AP*AP*CP*GP*CP*G) | Authors: | Yang, X, Han, X, Cross, C, Sanghvi, Y, Gao, X. | Deposit date: | 1999-08-28 | Release date: | 1999-09-14 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | NMR structure of an antisense DNA.RNA hybrid duplex containing a 3'-CH(2)N(CH(3))-O-5' or an MMI backbone linker. Biochemistry, 38, 1999
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7EZW
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![BU of 7ezw by Molmil](/molmil-images/mine/7ezw) | Cyclic Peptide that Interacts with the eIF4E Capped-mRNA Binding Site | Descriptor: | ALA-CYS-GLU-MET-GLY-PHE-PHE-GLN-ASP-CYS-GLY, Eukaryotic translation initiation factor 4E, SODIUM ION | Authors: | Brown, C.J, Ng, S, Frosi, Y. | Deposit date: | 2021-06-02 | Release date: | 2022-06-08 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.35 Å) | Cite: | Development of a novel peptide aptamer that interacts with the eIF4E capped-mRNA binding site using peptide epitope linker evolution (PELE). Rsc Chem Biol, 3, 2022
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1AM0
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![BU of 1am0 by Molmil](/molmil-images/mine/1am0) | AMP RNA APTAMER COMPLEX, NMR, 8 STRUCTURES | Descriptor: | ADENOSINE MONOPHOSPHATE, RNA APTAMER | Authors: | Jiang, F, Kumar, R.A, Jones, R.A, Patel, D.J. | Deposit date: | 1997-06-19 | Release date: | 1997-07-23 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Structural Basis of RNA Folding and Recognition in an AMP-RNA Aptamer Complex Nature, 382, 1996
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4GP7
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![BU of 4gp7 by Molmil](/molmil-images/mine/4gp7) | Polynucleotide kinase | Descriptor: | ADENOSINE-5'-TRIPHOSPHATE, CITRIC ACID, MAGNESIUM ION, ... | Authors: | Wang, L.K, Das, U, Smith, P, Shuman, S. | Deposit date: | 2012-08-20 | Release date: | 2012-11-14 | Last modified: | 2017-11-15 | Method: | X-RAY DIFFRACTION (2 Å) | Cite: | Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system. Rna, 18, 2012
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4GP6
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![BU of 4gp6 by Molmil](/molmil-images/mine/4gp6) | Polynucleotide kinase | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, Metallophosphoesterase | Authors: | Wang, L.K, Das, U, Smith, P, Shuman, S. | Deposit date: | 2012-08-20 | Release date: | 2012-11-14 | Last modified: | 2024-02-28 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | Structure and mechanism of the polynucleotide kinase component of the bacterial Pnkp-Hen1 RNA repair system. Rna, 18, 2012
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2FGP
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![BU of 2fgp by Molmil](/molmil-images/mine/2fgp) | Crystal structure of a minimal, all RNA hairpin ribozyme with modifications (g8dap, u39c) at ph 8.6 | Descriptor: | 5'-R(*CP*GP*GP*UP*GP*AP*(N6G)P*AP*AP*GP*GP*G)-3', 5'-R(*GP*GP*CP*AP*GP*AP*GP*AP*AP*AP*CP*AP*CP*AP*CP*GP*A)-3', 5'-R(*UP*CP*CP*CP*AP*GP*UP*CP*CP*AP*CP*CP*G)-3', ... | Authors: | Salter, J.D, Wedekind, J.E. | Deposit date: | 2005-12-22 | Release date: | 2006-02-14 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Water in the Active Site of an All-RNA Hairpin Ribozyme and Effects of Gua8 Base Variants on the Geometry of Phosphoryl Transfer. Biochemistry, 45, 2006
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5ONB
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![BU of 5onb by Molmil](/molmil-images/mine/5onb) | Drosophila Bag-of-marbles CBM peptide bound to human CAF40 | Descriptor: | CCR4-NOT transcription complex subunit 9, GLYCEROL, Protein bag-of-marbles | Authors: | Raisch, T, Sgromo, A, Backhaus, C, Izaurralde, E, Weichenrieder, O. | Deposit date: | 2017-08-03 | Release date: | 2017-12-27 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | DrosophilaBag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA, 24, 2018
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5ONA
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![BU of 5ona by Molmil](/molmil-images/mine/5ona) | Drosophila Bag-of-marbles CBM peptide bound to human CAF40-CNOT1 | Descriptor: | CCR4-NOT transcription complex subunit 1, CCR4-NOT transcription complex subunit 9, CHLORIDE ION, ... | Authors: | Raisch, T, Sgromo, A, Backhaus, C, Izaurralde, E, Weichenrieder, O. | Deposit date: | 2017-08-03 | Release date: | 2017-12-27 | Last modified: | 2024-01-17 | Method: | X-RAY DIFFRACTION (2.7 Å) | Cite: | DrosophilaBag-of-marbles directly interacts with the CAF40 subunit of the CCR4-NOT complex to elicit repression of mRNA targets. RNA, 24, 2018
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1GTF
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![BU of 1gtf by Molmil](/molmil-images/mine/1gtf) | The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 53-nucleotide RNA molecule containing GAGUU repeats | Descriptor: | (GAGUU)10GAG 53-NUCLEOTIDE RNA, TRP RNA-BINDING ATTENUATION PROTEIN (TRAP), TRYPTOPHAN | Authors: | Hopcroft, N.H, Wendt, A.L, Gollnick, P, Antson, A.A. | Deposit date: | 2002-01-15 | Release date: | 2002-04-05 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (1.75 Å) | Cite: | Specificity of Trap-RNA Interactions: Crystal Structures of Two Complexes with Different RNA Sequences Acta Crystallogr.,Sect.D, 58, 2002
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1FYJ
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![BU of 1fyj by Molmil](/molmil-images/mine/1fyj) | SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS). | Descriptor: | MULTIFUNCTIONAL AMINOACYL-TRNA SYNTHETASE | Authors: | Jeong, E.-J, Hwang, G.-S, Kim, K.H, Kim, M.J, Kim, S, Kim, K.-S. | Deposit date: | 2000-10-02 | Release date: | 2001-03-14 | Last modified: | 2024-05-29 | Method: | SOLUTION NMR | Cite: | Structural analysis of multifunctional peptide motifs in human bifunctional tRNA synthetase: identification of RNA-binding residues and functional implications for tandem repeats. Biochemistry, 39, 2000
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2F8S
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![BU of 2f8s by Molmil](/molmil-images/mine/2f8s) | Crystal structure of Aa-Ago with externally-bound siRNA | Descriptor: | 5'-R(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*AP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3', Argonaute protein | Authors: | Yuan, Y.R, Chen, H.Y, Patel, D.J. | Deposit date: | 2005-12-03 | Release date: | 2006-10-31 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (3 Å) | Cite: | A Potential Protein-RNA Recognition Event along the RISC-Loading Pathway from the Structure of A. aeolicus Argonaute with Externally Bound siRNA. Structure, 14, 2006
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