PDB: 48062 resultsInfo pagesStatus searchChemie searchBIRD

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8DR0	Closed state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.42 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
6TO1	Crystal structure of three N-terminal domains of the type V pili tip protein Mfa5 from Porphyromonas gingivalis Descriptor: CALCIUM ION, MAGNESIUM ION, Minor fimbrium subunit Mfa5, ... Authors: Persson, K, Heidler, T.V. Deposit date: 2019-12-11 Release date: 2020-12-02 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Porphyromonas gingivalis fimbrial protein Mfa5 contains a von Willebrand factor domain and an intramolecular isopeptide. Commun Biol, 4, 2021
8E5O	Escherichia coli Rho-dependent transcription pre-termination complex containing 24 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8DQX	Open state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(*TP*TP*TP*TP*TP*T)-3'), DNA (5'-D(P*TP*CP*CP*GP*AP*GP*CP*GP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*GP*CP*CP*CP*GP*GP*A)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.1 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8E3F	Escherichia coli Rho-dependent transcription pre-termination complex containing 18 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-17 Release date: 2022-09-07 Last modified: 2024-10-16 Method: ELECTRON MICROSCOPY (6.5 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
8DQZ	Intermediate state of RFC:PCNA bound to a 3' ss/dsDNA junction Descriptor: DNA (5'-D(P*CP*CP*CP*CP*GP*GP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*CP*GP*GP*GP*GP*GP*GP*GP*CP*CP*CP*CP*GP*GP*GP*G)-3'), GUANOSINE-5'-DIPHOSPHATE, ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.92 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
8DR6	Closed state of RFC:PCNA bound to a nicked dsDNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA (32-MER), DNA (5'-D(P*CP*CP*CP*CP*CP*CP*GP*GP*CP*CP*CP*CP*CP*CP*CP*GP*GP*C)-3'), ... Authors: Schrecker, M, Hite, R.K. Deposit date: 2022-07-20 Release date: 2022-08-24 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: Multistep loading of a DNA sliding clamp onto DNA by replication factor C. Elife, 11, 2022
6FOS	Cyanidioschyzon merolae photosystem I Descriptor: BETA-CAROTENE, CHLOROPHYLL A, IRON/SULFUR CLUSTER, ... Authors: Nelson, N, Hippler, M, Antoshvili, M, Caspy, I. Deposit date: 2018-02-08 Release date: 2018-04-11 Last modified: 2019-02-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Structure and function of photosystem I in Cyanidioschyzon merolae. Photosyn. Res., 139, 2019
8E5K	Escherichia coli Rho-dependent transcription pre-termination complex containing 21 nt long RNA spacer, Mg-ADP-BeF3, and NusG; TEC part Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Molodtsov, V, Wang, C. Deposit date: 2022-08-22 Release date: 2022-09-07 Last modified: 2023-02-22 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structural basis of Rho-dependent transcription termination. Nature, 614, 2023
6FRI	Structure of LuxB from Photobacterium leiognathi Descriptor: ACETATE ION, Alkanal monooxygenase beta chain Authors: Uhl, M, Gruber, K. Deposit date: 2018-02-15 Release date: 2018-02-28 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.297 Å) Cite: Structure of LuxB from Photobacterium leiognathi to be published
8EGM	Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa in complex with compound AZ13644908 Descriptor: (2R)-2-({4-[(5-tert-butyl-1-methyl-1H-pyrazol-3-yl)amino]-1H-pyrazolo[3,4-d]pyrimidin-6-yl}amino)-2-phenylethyl (2-aminoethyl)carbamate, SULFATE ION, UDP-N-acetylmuramate--L-alanine ligase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2022-09-12 Release date: 2022-10-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal Structure of UDP-N-acetylmuramate-L-alanine ligase (UDP-N-acetylmuramoyl-L-alanine synthetase, MurC) Pseudomonas aeruginosa to be published
7CVR	Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Tetralylamine Descriptor: (1~{S})-1,2,3,4-tetrahydronaphthalen-1-amine, (2S)-3-phenyl-2-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-08-26 Release date: 2021-09-01 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with (S)-1-Tetralylamine at 1.60 Angstrom Resolution To Be Published
8K58	The cryo-EM map of close TIEA-TIC complex Descriptor: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B. Deposit date: 2023-07-21 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.15 Å) Cite: TIEA inhibits Sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error To Be Published
8K5A	The cryo-EM map of open TIEA-TIC complex Descriptor: 15 kDa RNA polymerase-binding protein, DNA (29-MER), DNA-directed RNA polymerase subunit alpha, ... Authors: Zhang, K.N, Liu, Y, Chen, M, Wang, Y, Lin, W, Li, M, Zhang, X, Gao, Y, Gong, Q, Chen, H, Steve, M, Li, S, Zhang, K, Liu, B. Deposit date: 2023-07-21 Release date: 2024-07-24 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: TIEA inhibits sigma70-dependent transcriptions, accelerates elongation speed and elevates transcription error To Be Published
7CX6	Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-(+)-1-Phenylethylamine Descriptor: (1R)-1-phenylethanamine, (2~{S})-2-(5-cyclohexylpentanoylamino)-3-phenyl-propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-09-01 Release date: 2021-09-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-(+)-1-Phenylethylamine at 1.69 Angstrom Resolution To Be Published
7CX7	Crystal structure of Arabinose isomerase from hybrid AI8 Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, L-arabinose isomerase, ... Authors: Hoang, N.K.Q, Dhanasingh, I, Cao, T.P, Sung, J.Y, Shin, S.M, Lee, D.W, Lee, S.H. Deposit date: 2020-09-01 Release date: 2021-09-01 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.49 Å) Cite: Crystal structure of Arabinose isomerase from hyper thermophilic bacterium Thermotoga maritima (TMAI) wt To Be Published
7CX8	Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Tetralylamine Descriptor: (1R)-1,2,3,4-tetrahydronaphthalen-1-amine, (1~{S})-1,2,3,4-tetrahydronaphthalen-1-amine, (2~{S})-2-(5-cyclohexylpentanoylamino)-3-phenyl-propanoic acid, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-09-01 Release date: 2021-09-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Tetralylamine at 1.70 Angstrom Resolution To Be Published
7CKN	Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine in complex with Isopropylamine Descriptor: (2S)-3-phenyl-2-[2-[4-(trifluoromethyloxy)phenoxy]ethanoylamino]propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, GLYCEROL, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-07-17 Release date: 2021-09-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine in complex with Isopropylamine at 1.55 Angstrom Resolution To Be Published
7NDJ	Crystal structure of ZC3H12C PIN-CCCH Zn Finger domain with RNA heptamer Descriptor: 1,2-ETHANEDIOL, Probable ribonuclease ZC3H12C, RNA (5'-R(*UP*UP*AP*UP*UP*AP*U)-3'), ... Authors: Garg, A, Heinemann, U. Deposit date: 2021-02-01 Release date: 2021-05-19 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.649 Å) Cite: PIN and CCCH Zn-finger domains coordinate RNA targeting in ZC3H12 family endoribonucleases. Nucleic Acids Res., 49, 2021
7COO	Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with Cyclohexylamine Descriptor: (2S)-3-phenyl-2-[[(2S)-1-phenylmethoxycarbonylpyrrolidin-2-yl]carbonylamino]propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, CYCLOHEXYLAMMONIUM ION, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-08-04 Release date: 2021-09-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.49 Å) Cite: Structure of the CYP102A1 Haem Domain with N-Carboxybenzyl-L-Prolyl-L-Phenylalanine in complex with Cyclohexylamine at 1.49 Angstrom Resolution To Be Published
7CON	Structure of the CYP102A1 Haem Domain with N-{2-[4-(Trifluoromethoxy)phenoxy]}acetoyl-L-Phenylalanine in complex with n-Propylamine Descriptor: (2S)-3-phenyl-2-[2-[4-(trifluoromethyloxy)phenoxy]ethanoylamino]propanoic acid, 3-AMINOPROPANE, Bifunctional cytochrome P450/NADPH--P450 reductase, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-08-04 Release date: 2021-09-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.46 Å) Cite: Structure of the CYP102A1 Haem Domain with N-{2-[4-(trifluoromethoxy)phenoxy]}acetoyl-L-phenylalanine in complex with n-propylamine at 1.46 Angstrom Resolution To Be Published
2H2H	The Structural basis of sirtuin substrate specificity Descriptor: Histone H4, NAD-dependent deacetylase, ZINC ION Authors: Cosgrove, M.S, Wolberger, C. Deposit date: 2006-05-18 Release date: 2006-12-05 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: The structural basis of sirtuin substrate affinity Biochemistry, 45, 2006
7CP8	Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Indanylamine Descriptor: (2~{S})-2-(5-cyclohexylpentanoylamino)-3-phenyl-propanoic acid, Bifunctional cytochrome P450/NADPH--P450 reductase, GLYCEROL, ... Authors: Stanfield, J.K, Sugimoto, H, Shoji, O. Deposit date: 2020-08-06 Release date: 2021-09-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.68 Å) Cite: Structure of the CYP102A1 Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with (R)-1-Indanylamine at 1.68 Angstrom Resolution To Be Published
7CHL	Crystal structure of hybrid Arabinose isomerase AI-10 Descriptor: Hybrid Arabinose isomerase, MANGANESE (II) ION, SODIUM ION Authors: Cao, T.P, Dhanasingh, I, Sung, J.Y, Shin, S.M, Lee, D.W, Lee, S.H. Deposit date: 2020-07-06 Release date: 2021-10-20 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Crystal structure of hybrid Arabinose isomerase AI-10 To Be Published
6UM2	Structure of M-6-P/IGFII Receptor and IGFII complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Cation-independent mannose-6-phosphate receptor, Insulin-like growth factor II Authors: Wang, R, Qi, X, Li, X. Deposit date: 2019-10-08 Release date: 2020-02-26 Last modified: 2020-07-29 Method: ELECTRON MICROSCOPY (4.32 Å) Cite: Marked structural rearrangement of mannose 6-phosphate/IGF2 receptor at different pH environments Sci Adv, 6, 2020

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