Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6I8L
DownloadVisualize
BU of 6i8l by Molmil
Crystal structure of Spindlin1 in complex with the inhibitor TD001851a
Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-(cyclopropylmethoxy)-6'-[3-(1,3-dihydroisoindol-2-yl)propoxy]spiro[cyclopentane-1,3'-indole]-2'-amine, ...
Authors:Johansson, C, Fagan, V, Brennan, P.E, Sorrell, F.J, Krojer, T, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.C.T.
Deposit date:2018-11-20
Release date:2018-12-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:A Chemical Probe for Tudor Domain Protein Spindlin1 to Investigate Chromatin Function.
J.Med.Chem., 62, 2019
6I8B
DownloadVisualize
BU of 6i8b by Molmil
Crystal structure of Spindlin1 in complex with the inhibitor VinSpinIn
Descriptor: 2-[4-[2-[[2-[3-[2-azanyl-5-(cyclopropylmethoxy)-3,3-dimethyl-indol-6-yl]oxypropyl]-1,3-dihydroisoindol-5-yl]oxy]ethyl]-1,2,3-triazol-1-yl]-1-[4-(2-pyrrolidin-1-ylethyl)piperidin-1-yl]ethanone, DIMETHYL SULFOXIDE, GLYCINE, ...
Authors:Johansson, C, Fagan, V, Brennan, P.E, Sorrell, F.J, Krojer, T, Arrowsmith, C.H, Bountra, C, Edwards, A, Oppermann, U.C.T.
Deposit date:2018-11-19
Release date:2018-12-05
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:A Chemical Probe for Tudor Domain Protein Spindlin1 to Investigate Chromatin Function.
J.Med.Chem., 62, 2019
4K78
DownloadVisualize
BU of 4k78 by Molmil
CFTR Associated Ligand (CAL) E317A PDZ domain bound to peptide iCAL36-QDTRL (ANSRWQDTRL)
Descriptor: Golgi-associated PDZ and coiled-coil motif-containing protein, iCAL36-QDTRL peptide
Authors:Amacher, J.F, Madden, D.R.
Deposit date:2013-04-16
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Stereochemical Preferences Modulate Affinity and Selectivity among Five PDZ Domains that Bind CFTR: Comparative Structural and Sequence Analyses.
Structure, 22, 2014
3GWR
DownloadVisualize
BU of 3gwr by Molmil
Crystal structure of Putative calcium/calmodulin-dependent protein kinase type II association domain (YP_315894.1) from THIOBACILLUS DENITRIFICANS ATCC 25259 at 2.00 A resolution
Descriptor: Putative calcium/calmodulin-dependent protein kinase type II association domain, TETRAETHYLENE GLYCOL, UNKNOWN LIGAND
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-04-01
Release date:2009-04-14
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Crystal structure of Putative calcium/calmodulin-dependent protein kinase type II association domain (YP_315894.1) from THIOBACILLUS DENITRIFICANS ATCC 25259 at 2.00 A resolution
To be published
3VRE
DownloadVisualize
BU of 3vre by Molmil
The crystal structure of hemoglobin from woolly mammoth in the deoxy form
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta/delta hybrid, PROTOPORPHYRIN IX CONTAINING FE
Authors:Noguchi, H, Campbell, K.L, Ho, C, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-04-09
Release date:2012-11-07
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structures of haemoglobin from woolly mammoth in liganded and unliganded states.
Acta Crystallogr.,Sect.D, 68, 2012
3VRG
DownloadVisualize
BU of 3vrg by Molmil
The crystal structure of hemoglobin from woolly mammoth in the met form
Descriptor: Hemoglobin subunit alpha, Hemoglobin subunit beta/delta hybrid, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Noguchi, H, Campbell, K.L, Ho, C, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-04-09
Release date:2012-11-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structures of haemoglobin from woolly mammoth in liganded and unliganded states.
Acta Crystallogr.,Sect.D, 68, 2012
2M9P
DownloadVisualize
BU of 2m9p by Molmil
NMR structure of an inhibitor bound dengue NS3 protease
Descriptor: Serine protease inhibitor, Serine protease subunit NS2B, Serine protease NS3
Authors:Gibbs, A, Tounge, B, Steele, R.
Deposit date:2013-06-18
Release date:2014-07-09
Last modified:2023-11-15
Method:SOLUTION NMR
Cite:NMR structure of an inhibitor bound dengue NS3 protease provides new insights into the NS2B NS3 ligand interactions
To be Published
7ENB
DownloadVisualize
BU of 7enb by Molmil
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI with different conformation
Descriptor: FE (III) ION, N-OXALYLGLYCINE, NvfI, ...
Authors:Mori, T, Abe, I.
Deposit date:2021-04-16
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Nat Commun, 12, 2021
7EMZ
DownloadVisualize
BU of 7emz by Molmil
iron and alpha-ketoglutarate-dependent endoperoxidase NvfI W199F variant
Descriptor: FE (III) ION, N-OXALYLGLYCINE, NvfI W199F, ...
Authors:Mori, T, Abe, I.
Deposit date:2021-04-15
Release date:2021-07-14
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Molecular insights into the endoperoxide formation by Fe(II)/ alpha-KG-dependent oxygenase NvfI.
Nat Commun, 12, 2021
1A15
DownloadVisualize
BU of 1a15 by Molmil
SDF-1ALPHA
Descriptor: STROMAL DERIVED FACTOR-1ALPHA, SULFATE ION
Authors:Dealwis, C.G, Fernandez, E.J, Lolis, E.
Deposit date:1997-12-22
Release date:1998-08-12
Last modified:2021-11-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of chemically synthesized [N33A] stromal cell-derived factor 1alpha, a potent ligand for the HIV-1 "fusin" coreceptor.
Proc.Natl.Acad.Sci.USA, 95, 1998
6IGZ
DownloadVisualize
BU of 6igz by Molmil
Structure of PSI-LHCI
Descriptor: (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL, (6'R,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Xiong, P, Xiaochun, Q.
Deposit date:2018-09-27
Release date:2019-02-13
Last modified:2020-07-29
Method:ELECTRON MICROSCOPY (3.49 Å)
Cite:Structure of a green algal photosystem I in complex with a large number of light-harvesting complex I subunits.
Nat Plants, 5, 2019
4H57
DownloadVisualize
BU of 4h57 by Molmil
Thermolysin inhibition
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Englert, L, Biela, A, Heine, A, Klebe, G.
Deposit date:2012-09-18
Release date:2012-10-03
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Dissecting the hydrophobic effect on the molecular level: the role of water, enthalpy, and entropy in ligand binding to thermolysin.
Angew.Chem.Int.Ed.Engl., 52, 2013
6IF6
DownloadVisualize
BU of 6if6 by Molmil
Structure of the periplasmic domain of SflA
Descriptor: GLYCEROL, PHOSPHATE ION, Protein SflA
Authors:Nishikawa, S, Sakuma, M, Kojima, S, Homma, M, Imada, K.
Deposit date:2018-09-18
Release date:2019-05-01
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of the periplasmic domain of SflA involved in spatial regulation of the flagellar biogenesis of Vibrio reveals a TPR/SLR-like fold.
J.Biochem., 166, 2019
1EXT
DownloadVisualize
BU of 1ext by Molmil
EXTRACELLULAR DOMAIN OF THE 55KDA TUMOR NECROSIS FACTOR RECEPTOR. CRYSTALLIZED AT PH3.7 IN P 21 21 21.
Descriptor: MAGNESIUM ION, SULFATE ION, TUMOR NECROSIS FACTOR RECEPTOR
Authors:Naismith, J.H, Sprang, S.R.
Deposit date:1996-07-03
Release date:1997-01-11
Last modified:2023-08-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structures of the extracellular domain of the type I tumor necrosis factor receptor.
Structure, 4, 1996
3HFT
DownloadVisualize
BU of 3hft by Molmil
Crystal structure of a putative polysaccharide deacetylase involved in o-antigen biosynthesis (wbms, bb0128) from bordetella bronchiseptica at 1.90 A resolution
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, UNKNOWN LIGAND, ...
Authors:Joint Center for Structural Genomics, Joint Center for Structural Genomics (JCSG)
Deposit date:2009-05-12
Release date:2009-06-23
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of WbmS, polysaccharide deacetylase involved in O-antigen biosynthesis (NP_886680.1) from BORDETELLA BRONCHISEPTICA at 1.90 A resolution
To be published
7KC5
DownloadVisualize
BU of 7kc5 by Molmil
X-ray structure of Lfa-1 I domain in complex with BMS-68852 collected at 273 K
Descriptor: 6-[(5S,9R)-9-(4-cyanophenyl)-3-(3,5-dichlorophenyl)-1-methyl-2,4-dioxo-1,3,7-triazaspiro[4.4]non-7-yl]pyridine-3-carboxylic acid, Integrin alpha-L, MAGNESIUM ION
Authors:Woldeyes, R.A, Hallenbeck, K.K, Pfaff, S.J, Lee, G, Cortez, S.V, Kelly, M.J, Akassoglou, K, Arkin, M.R, Fraser, J.S.
Deposit date:2020-10-05
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.86 Å)
Cite:Divergent conformational dynamics controls allosteric ligand accessibility across evolutionarily related I-domain-containing integrins
To Be Published
7KC6
DownloadVisualize
BU of 7kc6 by Molmil
X-ray structure of Lfa-1 I domain in complex with Lovastatin collected at 273 K
Descriptor: Integrin alpha-L, LOVASTATIN, MAGNESIUM ION
Authors:Woldeyes, R.A, Hallenbeck, K.K, Pfaff, S.J, Lee, G, Cortez, S.V, Kelly, M.J, Akassoglou, K, Arkin, M.R, Fraser, J.S.
Deposit date:2020-10-05
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Divergent conformational dynamics controls allosteric ligand accessibility across evolutionarily related I-domain-containing integrins
To Be Published
6ETE
DownloadVisualize
BU of 6ete by Molmil
Crystal structure of KDM4D with tetrazolhydrazide compound 5
Descriptor: 1,2-ETHANEDIOL, Lysine-specific demethylase 4D, NICKEL (II) ION, ...
Authors:Malecki, P.H, Weiss, M.S, Heinemann, U, Link, A.
Deposit date:2017-10-26
Release date:2019-02-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.468 Å)
Cite:Crystal structure of KDM4D with tetrazolylhydrazide ligand NR128
To be published
3VRF
DownloadVisualize
BU of 3vrf by Molmil
The crystal structure of hemoglobin from woolly mammoth in the carbonmonoxy forms
Descriptor: CARBON MONOXIDE, Hemoglobin subunit alpha, Hemoglobin subunit beta/delta hybrid, ...
Authors:Noguchi, H, Campbell, K.L, Ho, C, Park, S.-Y, Tame, J.R.H.
Deposit date:2012-04-09
Release date:2012-11-07
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structures of haemoglobin from woolly mammoth in liganded and unliganded states.
Acta Crystallogr.,Sect.D, 68, 2012
3I0Y
DownloadVisualize
BU of 3i0y by Molmil
Crystal structure of a putative polyketide cyclase (xcc0381) from xanthomonas campestris pv. campestris at 1.50 A resolution
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, Putative polyketide cyclase, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-06-25
Release date:2009-07-21
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of putative polyketide cyclase (NP_635776.1) from XANTHOMONAS CAMPESTRIS at 1.50 A resolution
To be published
3HRG
DownloadVisualize
BU of 3hrg by Molmil
Crystal structure of Bacteroides thetaiotaomicron BT_3980, protein with actin-like ATPase fold and unknown function (NP_812891.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.85 A resolution
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, UNKNOWN LIGAND, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-06-09
Release date:2009-06-23
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Bacteroides thetaiotaomicron BT_3980, protein with actin-like ATPase fold and unknown function (NP_812891.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 1.85 A resolution
To be Published
3HMZ
DownloadVisualize
BU of 3hmz by Molmil
CRYSTAL STRUCTURE OF A FMN-BINDING DOMAIN OF FLAVIN REDUCTASES-LIKE ENZYME (SBAL_0626) FROM SHEWANELLA BALTICA OS155 AT 1.50 A RESOLUTION
Descriptor: 1,2-ETHANEDIOL, FLAVIN MONONUCLEOTIDE, Flavin reductase domain protein, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-05-29
Release date:2009-06-30
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Crystal structure of FMN-binding domain of flavin reductases-like enzyme (YP_001049024.1) from Shewanella baltica OS155 at 1.50 A resolution
To be published
6J3Z
DownloadVisualize
BU of 6j3z by Molmil
Structure of C2S1M1-type PSII-FCPII supercomplex from diatom
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.6 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
6J3Y
DownloadVisualize
BU of 6j3y by Molmil
Structure of C2S2-type PSII-FCPII supercomplex from diatom
Descriptor: (3S,3'S,5R,5'R,6S,6'R,8'R)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'-yl acetate, 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, ...
Authors:Nagao, R, Kato, K, Shen, J.R, Miyazaki, N, Akita, F.
Deposit date:2019-01-07
Release date:2019-08-07
Last modified:2019-11-06
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural basis for energy harvesting and dissipation in a diatom PSII-FCPII supercomplex.
Nat.Plants, 5, 2019
4Q6H
DownloadVisualize
BU of 4q6h by Molmil
CFTR Associated Ligand (CAL) bound to last 6 residues of CFTR (decameric peptide: iCAL36VQDTRL)
Descriptor: CFTR-associated ligand, SULFITE ION, iCAL36-VQDTRL peptide
Authors:Amacher, J.F, Madden, D.R.
Deposit date:2014-04-22
Release date:2014-05-14
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:Understanding PDZ Affinity and Selectivity: All Residues Considered
TO BE PUBLISHED

224572

數據於2024-09-04公開中

PDB statisticsPDBj update infoContact PDBjnumon