PDB: 72372 resultsInfo pagesStatus searchChemie searchBIRD

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8FDU	Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi (local refined on AAA3-AAA5 and LIS1) Descriptor: ADENOSINE-5'-DIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase, Platelet-activating factor acetylhydrolase IB subunit beta,Platelet-activating factor acetylhydrolase IB subunit beta,human LIS1 protein with a SNAP tag Authors: Ton, W, Wang, Y, Chai, P. Deposit date: 2022-12-04 Release date: 2023-06-21 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Microtubule-binding-induced allostery triggers LIS1 dissociation from dynein prior to cargo transport. Nat.Struct.Mol.Biol., 30, 2023
8FDT	Engineered human dynein motor domain in the microtubule-unbound state with LIS1 complex in the buffer containing ATP-Vi Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase, ... Authors: Ton, W, Wang, Y, Chai, P. Deposit date: 2022-12-04 Release date: 2023-06-21 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Microtubule-binding-induced allostery triggers LIS1 dissociation from dynein prior to cargo transport. Nat.Struct.Mol.Biol., 30, 2023
8FD6	Engineered human dynein motor domain in the microtubule-unbound state in the buffer containing ATP-Vi Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, Cytoplasmic dynein 1 heavy chain 1,Serine--tRNA ligase, ... Authors: Ton, W, Wang, Y, Chai, P. Deposit date: 2022-12-02 Release date: 2023-06-21 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Microtubule-binding-induced allostery triggers LIS1 dissociation from dynein prior to cargo transport. Nat.Struct.Mol.Biol., 30, 2023
4EYT	Crystal structure of the C-terminal domain of Tetrahymena telomerase protein p65 Descriptor: SULFATE ION, Telomerase associated protein p65 Authors: Singh, M, Wang, Z, Koo, B.-K, Patel, A, Cascio, D, Collins, K, Feigon, J. Deposit date: 2012-05-01 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Basis for Telomerase RNA Recognition and RNP Assembly by the Holoenzyme La Family Protein p65. Mol.Cell, 47, 2012
2OM3	High-resolution cryo-EM structure of Tobacco Mosaic Virus Descriptor: Coat protein, Tobacco Mosaic Virus RNA Authors: Sachse, C. Deposit date: 2007-01-20 Release date: 2007-10-16 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: High-resolution electron microscopy of helical specimens: a fresh look at tobacco mosaic virus. J.Mol.Biol., 371, 2007
1OJ1	Nonproductive and Novel Binding Modes in Cytotoxic Ribonucleases from Rana catesbeiana of Two Crystal Structures Complexed with (2,5 CpG) and d(ApCpGpA) Descriptor: CYTIDYL-2'-5'-PHOSPHO-GUANOSINE, RC-RNASE6 RIBONUCLEASE, SULFATE ION Authors: Tsai, C.-J, Liu, J.-H, Liao, Y.-D, Chen, L.-y, Cheng, P.-T, Sun, Y.-J. Deposit date: 2003-06-28 Release date: 2004-07-15 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Nonproductive and Novel Binding Modes in Cytotoxic Ribonucleases from Rana Catesbeiana of Two Crystal Structures Complexed with C(2,5 Cpg) and D(Apcpgpa) To be Published
1T1O	Components of the control 70S ribosome to provide reference for the RRF binding site Descriptor: 19-mer fragment of the 23S rRNA, 42-mer fragment of double helix from 16S rRNA, dodecamer fragment of double helix from 23S rRNA Authors: Agrawal, R.K, Sharma, M.R, Kiel, M.C, Hirokawa, G, Booth, T.M, Spahn, C.M, Grassucci, R.A, Kaji, A, Frank, J. Deposit date: 2004-04-16 Release date: 2004-06-15 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (12 Å) Cite: Visualization of ribosome-recycling factor on the Escherichia coli 70S ribosome: Functional implications Proc.Natl.Acad.Sci.USA, 101, 2004
4GSP	RIBONUCLEASE T1 COMPLEXED WITH 2',3'-CGPS + 3'-GMP, 7 DAYS Descriptor: CALCIUM ION, GUANOSINE-2',3'-CYCLOPHOSPHOROTHIOATE, GUANOSINE-3'-MONOPHOSPHATE, ... Authors: Zegers, I, Wyns, L. Deposit date: 1997-12-02 Release date: 1998-08-12 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Hydrolysis of a slow cyclic thiophosphate substrate of RNase T1 analyzed by time-resolved crystallography. Nat.Struct.Biol., 5, 1998
4N2P	Structure of Archease from Pyrococcus horikoshii Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ACETATE ION, CALCIUM ION, ... Authors: Desai, K.K, Bingman, C.A, Phillips Jr, G.N, Raines, R.T. Deposit date: 2013-10-05 Release date: 2014-01-01 Last modified: 2020-09-23 Method: X-RAY DIFFRACTION (1.435 Å) Cite: A tRNA splicing operon: Archease endows RtcB with dual GTP/ATP cofactor specificity and accelerates RNA ligation. Nucleic Acids Res., 42, 2014
1DVK	CRYSTAL STRUCTURE OF THE FUNCTIONAL DOMAIN OF THE SPLICING FACTOR PRP18 Descriptor: PRP18 Authors: Jiang, J, Horowitz, D.S, Xu, R.M. Deposit date: 2000-01-21 Release date: 2000-04-05 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal structure of the functional domain of the splicing factor Prp18. Proc.Natl.Acad.Sci.USA, 97, 2000
4E8N	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of NH4+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, AMMONIUM ION, Group IIC intron, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.96 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8Q	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Tl+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.84 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8V	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Ba2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, BARIUM ION, Group IIC intron, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.995 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8R	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Cs+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, CESIUM ION, Group IIC intron, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.36 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8P	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Rb+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.28 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8K	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Ca2+ and a non-hydrolyzed oligonucleotide substrate Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*CP*G*AP*UP*UP*UP*AP*UP*UP*A)-3', CALCIUM ION, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.03 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
4E8M	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of K+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-03-20 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
1Z2J	Solution structure of the HIV-1 frameshift inducing element Descriptor: HIV-1 frameshift site RNA Authors: Staple, D.W, Butcher, S.E. Deposit date: 2005-03-08 Release date: 2005-06-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure and Thermodynamic Investigation of the HIV-1 Frameshift Inducing Element. J.Mol.Biol., 349, 2005
1XMM	Structure of human Dcps bound to m7GDP Descriptor: 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE, N7-METHYL-GUANOSINE-5'-MONOPHOSPHATE, PHOSPHATE ION, ... Authors: Chen, N, Song, H. Deposit date: 2004-10-04 Release date: 2005-03-22 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping. J.Mol.Biol., 347, 2005
4I1S	Melanoma differentiation associated protein-5 Helicase domain complex with inhibitor Non-structural protein V Descriptor: Melanoma differentiation associated protein-5, Non-structural protein V, ZINC ION Authors: Motz, C, Witte, G, Hopfner, K.P. Deposit date: 2012-11-21 Release date: 2013-01-30 Last modified: 2017-07-26 Method: X-RAY DIFFRACTION (2.293 Å) Cite: Paramyxovirus V proteins disrupt the fold of the RNA sensor MDA5 to inhibit antiviral signaling. Science, 339, 2013
4FAX	Structure of Oceanobacillus iheyensis group II intron in a ligand-free state in the presence of Na+ and Mg2+ Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Group IIC intron, MAGNESIUM ION, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-05-22 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
1XML	Structure of human Dcps Descriptor: PHOSPHATE ION, heat shock-like protein 1 Authors: Chen, N, Song, H. Deposit date: 2004-10-04 Release date: 2005-03-22 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structures of human DcpS in ligand-free and m7GDP-bound forms suggest a dynamic mechanism for scavenger mRNA decapping. J.Mol.Biol., 347, 2005
4FAW	Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and a hydrolyzed oligonucleotide fragment Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 5'-R(*A*UP*UP*UP*AP*UP*UP*A)-3', Group IIC intron, ... Authors: Marcia, M, Pyle, A.M. Deposit date: 2012-05-22 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Visualizing Group II Intron Catalysis through the Stages of Splicing. Cell(Cambridge,Mass.), 151, 2012
1JTJ	Solution structure of HIV-1Lai mutated SL1 hairpin Descriptor: HIV-1Lai SL1 Authors: Kieken, F, Arnoult, E, Barbault, F, Paquet, F, Huynh-Dinh, T, Paoletti, J, Genest, D, Lancelot, G. Deposit date: 2001-08-21 Release date: 2002-12-11 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: HIV-1(Lai) genomic RNA: combined used of NMR and molecular dynamics simulation for studying the structure and internal dynamics of a mutated SL1 hairpin. EUR.BIOPHYS.J., 31, 2002
7YCG	Cryo-EM structure of Tetrahymena ribozyme conformation 2 undergoing the first-step self-splicing Descriptor: GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, RNA (393-MER), ... Authors: Zhang, X, Li, S, Pintilie, G, Palo, M.Z, Zhang, K. Deposit date: 2022-07-01 Release date: 2023-07-05 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.18 Å) Cite: Snapshots of the first-step self-splicing of Tetrahymena ribozyme revealed by cryo-EM. Nucleic Acids Res., 51, 2023

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