PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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4D6N	THE CRYSTAL STRUCTURE OF I-DMOI IN COMPLEX WITH ITS TARGET DNA AT 10 DAYS INCUBATION IN 5MM MG (STATE 7) Descriptor: 5'-D(*DCP*CP*GP*GP*CP*AP*AP*GP*GP*CP)-3', 5'-D(*DCP*GP*CP*GP*CP*CP*GP*GP*AP*AP*CP*TP*TP*DAP*C)-3', 5'-D(*DGP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*DAP)-3', ... Authors: Molina, R, Stella, S, Redondo, P, Gomez, H, Marcaida, M.J, Orozco, M, Prieto, J, Montoya, G. Deposit date: 2014-11-13 Release date: 2014-12-17 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Visualizing Phosphodiester-Bond Hydrolysis by an Endonuclease. Nat.Struct.Mol.Biol., 22, 2015
455D	A6/A18 INTER-STRAND DITHIOBIS(PROPANE)-CROSSLINKED DODECAMER (CGCGAATTCGCG)2 Descriptor: DITHIOBIS-(PROPANE), DNA (5'-D(*CP*GP*CP*GP*AP*(SSP)AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION Authors: Chiu, T.K, Kaczor-Grzeskowiak, M, Dickerson, R.E. Deposit date: 1999-03-04 Release date: 1999-10-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.43 Å) Cite: Absence of minor groove monovalent cations in the crosslinked dodecamer C-G-C-G-A-A-T-T-C-G-C-G. J.Mol.Biol., 292, 1999
6H8Q	Structural basis for Scc3-dependent cohesin recruitment to chromatin Descriptor: Cohesin subunit SCC3, DNA (5'-D(P*CP*TP*TP*TP*CP*GP*TP*TP*TP*CP*CP*TP*TP*GP*AP*AP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*CP*AP*AP*GP*GP*AP*AP*AP*CP*GP*AP*AP*AP*G)-3'), ... Authors: Li, Y, Muir, K, Panne, D. Deposit date: 2018-08-03 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.631 Å) Cite: Structural basis for Scc3-dependent cohesin recruitment to chromatin. Elife, 7, 2018
1UWB	TYR 181 CYS HIV-1 RT/8-CL TIBO Descriptor: 5-CHLORO-8-METHYL-7-(3-METHYL-BUT-2-ENYL)-6,7,8,9-TETRAHYDRO-2H-2,7,9A-TRIAZA-BENZO[CD]AZULENE-1-THIONE, REVERSE TRANSCRIPTASE Authors: Das, K, Ding, J, Hsiou, Y, Arnold, E. Deposit date: 1996-11-21 Release date: 1997-05-15 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structures of 8-Cl and 9-Cl TIBO complexed with wild-type HIV-1 RT and 8-Cl TIBO complexed with the Tyr181Cys HIV-1 RT drug-resistant mutant. J.Mol.Biol., 264, 1996
5AKF	THE CRYSTAL STRUCTURE OF I-DMOI Q42AK120M IN COMPLEX WITH ITS TARGET DNA NICKED IN THE CODING STRAND A AND IN THE PRESENCE OF 2MM MN Descriptor: 25MER, 5'-D(*GP*CP*CP*TP*TP*GP*CP*CP*GP*GP*GP*TP*AP*AP)-3', 5'-D(*GP*TP*TP*CP*CP*GP*GP*CP*GP*CP*GP)-3', ... Authors: Molina, R, Marcaida, M.J, Redondo, P, Marenchino, M, D'Abramo, M, Montoya, G, Prieto, J. Deposit date: 2015-03-03 Release date: 2015-06-17 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Engineering a Nickase on the Homing Endonuclease I-Dmoi Scaffold. J.Biol.Chem., 290, 2015
5D5H	Crystal structure of Mycobacterium tuberculosis Topoisomerase I Descriptor: ACETATE ION, DNA topoisomerase 1, GLYCEROL, ... Authors: Tan, K, Cheng, B, Tse-Dinh, Y.C. Deposit date: 2015-08-10 Release date: 2015-12-16 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Insights from the Structure of Mycobacterium tuberculosis Topoisomerase I with a Novel Protein Fold. J.Mol.Biol., 428, 2016
6KE9	The Human Telomeric Nucleosome Displays Distinct Structural and Dynamic Properties Descriptor: Histone H2A type 1-B/E, Histone H2B type 1-K, Histone H3.1, ... Authors: Soman, A, Liew, C.W, Teo, H.L, Berezhnoy, N, Korolev, N, Rhodes, D, Nordenskiold, L. Deposit date: 2019-07-04 Release date: 2020-04-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.22 Å) Cite: The human telomeric nucleosome displays distinct structural and dynamic properties. Nucleic Acids Res., 48, 2020
1QNF	STRUCTURE OF PHOTOLYASE Descriptor: 8-HYDROXY-10-(D-RIBO-2,3,4,5-TETRAHYDROXYPENTYL)-5-DEAZAISOALLOXAZINE, FLAVIN-ADENINE DINUCLEOTIDE, PHOTOLYASE Authors: Miki, K, Kitadokoro, K. Deposit date: 1997-07-04 Release date: 1998-01-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal structure of DNA photolyase from Anacystis nidulans Nat.Struct.Biol., 4, 1997
1IN4	THERMOTOGA MARITIMA RUVB HOLLIDAY JUNCTION BRANCH MIGRATION MOTOR Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, COBALT (II) ION, ... Authors: Putnam, C.D, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
8PC5	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ... Authors: Koutna, E, Kouba, T, Veverka, V. Deposit date: 2023-06-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
8PC6	H3K36me3 nucleosome-LEDGF/p75 PWWP domain complex - pose 2 Descriptor: Histone H2A, Histone H2B 1.1, Histone H3, ... Authors: Koutna, E, Kouba, T, Veverka, V. Deposit date: 2023-06-09 Release date: 2023-08-16 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.04 Å) Cite: Multivalency of nucleosome recognition by LEDGF. Nucleic Acids Res., 51, 2023
1IN7	THERMOTOGA MARITIMA RUVB R170A Descriptor: ACETATE ION, ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1J7K	THERMOTOGA MARITIMA RUVB P216G MUTANT Descriptor: ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, COBALT (II) ION, ... Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-16 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
8CDY	N-terminal domain of human apolipoprotein E Descriptor: Maltodextrin-binding protein,Apolipoprotein E Authors: Marek, M, Nemergut, M. Deposit date: 2023-02-01 Release date: 2023-07-19 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Domino-like effect of C112R mutation on ApoE4 aggregation and its reduction by Alzheimer's Disease drug candidate. Mol Neurodegener, 18, 2023
1R4D	Solution structure of the chimeric L/D DNA oligonucleotide d(C8metGCGC(L)G(L)CGCG)2 Descriptor: 5'-D(*CP*(8MG)P*CP*GP*(0DC)P*(0DG)P*CP*GP*CP*G)-3' Authors: Cherrak, I, Mauffret, O, Santamaria, F, Rayner, B, Hocquet, A, Ghomi, M, Fermandjian, S. Deposit date: 2003-10-06 Release date: 2003-10-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: L-nucleotides and 8-methylguanine of d(C1m8G2C3G4C5LG6LC7G8C9G10)2 act cooperatively to promote a left-handed helix under physiological salt conditions. Nucleic Acids Res., 31, 2003
1L1H	Crystal Structure of the Quadruplex DNA-Drug Complex Descriptor: 3-PYRROLIDIN-1-YL-N-[6-(3-PYRROLIDIN-1-YL-PROPIONYLAMINO)-ACRIDIN-3-YL]-PROPIONAMIDE, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G.N, Neidle, S. Deposit date: 2002-02-16 Release date: 2003-02-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of a G-quadruplex-Ligand Complex J.Mol.Biol., 326, 2003
7X5B	Crystal structure of RuvB Descriptor: ADENOSINE-5'-DIPHOSPHATE, Holliday junction ATP-dependent DNA helicase RuvB Authors: Lin, Z, Qu, Q, Zhang, X, Zhou, Z, Dai, L. Deposit date: 2022-03-04 Release date: 2023-03-08 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Cryo-EM structure of the RuvAB-Holliday junction intermediate complex from Pseudomonas aeruginosa. Front Plant Sci, 14, 2023
2WYQ	THE CRYSTAL STRUCTURE OF THE UBIQUITIN-LIKE (UBL) DOMAIN OF HHR23A (HUMAN HOMOLOGUE A OF RAD23) Descriptor: SULFATE ION, UV EXCISION REPAIR PROTEIN RAD23 HOMOLOG A Authors: Chen, Y.W. Deposit date: 2009-11-19 Release date: 2010-11-10 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.651 Å) Cite: The Crystal Structure of the Ubiquitin-Like (Ubl) Domain of Human Homologue a of Rad23 (Hhr23A) Protein Protein Eng.Des.Sel., 24, 2011
7Y61	Cryo-EM structure of the two CAF1LCs bound right-handed Di-tetrasome Descriptor: Chromatin assembly factor 1 subunit A, Chromatin assembly factor 1 subunit B, Histone H3.1, ... Authors: Liu, C.P, Yu, Z.Y, Yu, C, Xu, R.M. Deposit date: 2022-06-18 Release date: 2023-08-16 Last modified: 2023-09-06 Method: ELECTRON MICROSCOPY (5.6 Å) Cite: Structural insights into histone binding and nucleosome assembly by chromatin assembly factor-1. Science, 381, 2023
1M69	Atomic Resolution Structure of 5Br-9amino-DACA with d[CGTACG]2 Descriptor: 5'-D(*CP*GP*TP*AP*CP*G)-3', 5-BROMO-N[2-(DIMETHYLAMINO)ETHYL]-9-AMINOACRIDINE-4-CARBOXAMIDE, SPERMINE Authors: Teixeira, S.C.M, Thorpe, J.H, Todd, A.K, Cardin, C.J. Deposit date: 2002-07-15 Release date: 2003-08-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Heavy Going: the Atomic Resolution Structure of a Topoisomerase II Poison Intercalating into DNA in Multiple Orientations Also Reveals a Multiple Adenine-Thymine Hydrogen Bonding Pattern To be Published
1IN8	THERMOTOGA MARITIMA RUVB T158V Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001
1QCH	STRUCTURE, DYNAMICS AND HYDRATION OF THE NOGALAMYCIN-D(ATGCAT)2 COMPLEX DETERMINED BY NMR AND MOLECULAR DYNAMICS SIMULATIONS IN SOLUTION Descriptor: 5'-D(*AP*TP*GP*CP*AP*T)-3', NOGALAMYCIN, SODIUM ION Authors: Williams, H.E.L, Searle, M.S. Deposit date: 1999-05-05 Release date: 1999-08-02 Last modified: 2022-03-02 Method: SOLUTION NMR Cite: Structure, dynamics and hydration of the nogalamycin-d(ATGCAT)2Complex determined by NMR and molecular dynamics simulations in solution. J.Mol.Biol., 290, 1999
3VAL	Structure of U2AF65 variant with BrU5C1 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3'), SULFATE ION, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
7VIV	Crystal structure of the I73R from African Swine Fever Virus Descriptor: I73R Authors: Sun, L.F, Wu, Y.K. Deposit date: 2021-09-28 Release date: 2022-09-07 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insight into African Swine Fever Virus I73R protein reveals it is a Z-DNA binding protein To be published
1IN5	THERMOGOTA MARITIMA RUVB A156S MUTANT Descriptor: ADENOSINE-5'-DIPHOSPHATE, HOLLIDAY JUNCTION DNA HELICASE RUVB Authors: Putnam, C.D, Clancy, S.B, Tsuruta, H, Gonzalez, S, Wetmur, J.G, Tainer, J.A. Deposit date: 2001-05-12 Release date: 2001-08-08 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and mechanism of the RuvB Holliday junction branch migration motor. J.Mol.Biol., 311, 2001

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