PDB: 47065 resultsInfo pagesStatus searchChemie searchBIRD

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6Q9B	CI Membrane Arm focused refinement from Ovine respiratory SC I+III2 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, Acyl carrier protein, ... Authors: Letts, J.A, Sazanov, L.A. Deposit date: 2018-12-17 Release date: 2019-08-21 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk. Mol.Cell, 75, 2019
8DBS	E. coli ATP synthase imaged in 10mM MgATP State2 "half-up" Fo classified Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
6QAJ	Structure of the tripartite motif of KAP1/TRIM28 Descriptor: Endolysin,Transcription intermediary factor 1-beta, ZINC ION Authors: Stoll, G.A, Oda, S, Yu, M, Modis, Y. Deposit date: 2018-12-19 Release date: 2019-07-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.901 Å) Cite: Structure of KAP1 tripartite motif identifies molecular interfaces required for retroelement silencing. Proc.Natl.Acad.Sci.USA, 116, 2019
6QC7	Ovine respiratory complex I FRC open class 3 Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, Acyl carrier protein, ... Authors: Letts, J.A, Sazanov, L.A. Deposit date: 2018-12-27 Release date: 2019-08-21 Last modified: 2019-10-02 Method: ELECTRON MICROSCOPY (4.4 Å) Cite: Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk. Mol.Cell, 75, 2019
8DBQ	E. coli ATP synthase imaged in 10mM MgATP State1 "half-up" Fo classified Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase epsilon chain, ... Authors: Sobti, M, Stewart, A.G. Deposit date: 2022-06-14 Release date: 2023-01-25 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4 Å) Cite: Changes within the central stalk of E. coli F 1 F o ATP synthase observed after addition of ATP. Commun Biol, 6, 2023
8IP8	Wheat 80S ribosome stalled on AUG-Stop boron dependently Descriptor: 18S ribosomal RNA, 40S ribosomal protein eL8, 40S ribosomal protein eS1, ... Authors: Yokoyama, T, Tanaka, M, Saito, H, Nishimoto, M, Tsuda, K, Sotta, N, Shigematsu, H, Shirouzu, M, Iwasaki, S, Ito, T, Fujiwara, T. Deposit date: 2023-03-14 Release date: 2024-02-21 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Boric acid intercepts 80S ribosome migration from AUG-stop by stabilizing eRF1. Nat.Chem.Biol., 20, 2024
6Q1S	A hypothetical aminotransferase from Mycobacterium tuberculosis, alpha-ketoglutarate and PMP bound form Descriptor: 2-OXOGLUTARIC ACID, 4'-DEOXY-4'-AMINOPYRIDOXAL-5'-PHOSPHATE, CITRIC ACID, ... Authors: Duan, L, Sacchettini, J. Deposit date: 2019-08-05 Release date: 2020-09-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.3 Å) Cite: A hypothetical aminotransferase from Mycobacterium tuberculosis To Be Published
8IFC	Arbekacin-bound E.coli 70S ribosome in the PURE system Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. Deposit date: 2023-02-17 Release date: 2024-02-14 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 175, 2024
8IFE	Arbekacin-added human 80S ribosome Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. Deposit date: 2023-02-17 Release date: 2024-02-14 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.57 Å) Cite: Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 175, 2024
8IFB	Dibekacin-bound E.coli 70S ribosome in the PURE system Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Tomono, J, Asano, K, Chiashi, T, Tanaka, Y, Yokoyama, T. Deposit date: 2023-02-17 Release date: 2024-02-14 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.43 Å) Cite: Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside. J.Biochem., 175, 2024
8JDM	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2023-05-14 Release date: 2023-12-06 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.67 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
8CWO	Cutibacterium acnes 30S ribosomal subunit with Sarecycline bound, body domain only in the local refined map Descriptor: 16S ribosomal RNA, 30S ribosomal protein S11, 30S ribosomal protein S12, ... Authors: Lomakin, I.B, Devarkar, S.C, Bunick, C.G. Deposit date: 2022-05-19 Release date: 2023-03-15 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (2.84 Å) Cite: Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism. Nucleic Acids Res., 51, 2023
8JDL	Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Ishiguro, K, Yokoyama, T, Shirouzu, M, Suzuki, T. Deposit date: 2023-05-14 Release date: 2023-12-06 Last modified: 2023-12-27 Method: ELECTRON MICROSCOPY (2.42 Å) Cite: Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth. Cell, 186, 2023
8CRX	Cutibacterium acnes 70S ribosome with mRNA, P-site tRNA and Sarecycline bound Descriptor: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Lomakin, I.B, Devarkar, S.C, Bunick, C.G. Deposit date: 2022-05-12 Release date: 2023-03-22 Last modified: 2023-04-19 Method: ELECTRON MICROSCOPY (2.78 Å) Cite: Sarecycline inhibits protein translation in Cutibacterium acnes 70S ribosome using a two-site mechanism. Nucleic Acids Res., 51, 2023
6OKK	Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit Descriptor: 18S ribosomal RNA, 40S ribosomal protein S10, 40S ribosomal protein S11, ... Authors: Wong, W, Scheres, S.H.W. Deposit date: 2019-04-13 Release date: 2019-05-22 Last modified: 2020-01-08 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine. Elife, 3, 2014
6OW3	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter variant -1T Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*C)-3'), DNA (5'-D(P*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*TP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-09 Release date: 2019-07-24 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.766 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6OY6	X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min Descriptor: DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*GP*AP*TP*CP*TP*GP*AP*TP*GP*CP*AP*GP*G)-3'), DNA (5'-D(P*CP*CP*TP*GP*CP*AP*TP*CP*AP*GP*AP*GP*CP*CP*CP*AP*AP*AP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Shin, Y, Murakami, K.S. Deposit date: 2019-05-14 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.096 Å) Cite: Structural basis of reiterative transcription from the pyrG and pyrBI promoters by bacterial RNA polymerase. Nucleic Acids Res., 48, 2020
6QBX	Ovine respiratory supercomplex I+III2 closed class. Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE, Acyl carrier protein, ... Authors: Letts, J.A, Sazanov, L.A. Deposit date: 2018-12-24 Release date: 2019-08-21 Last modified: 2019-12-18 Method: ELECTRON MICROSCOPY (4.2 Å) Cite: Structures of Respiratory Supercomplex I+III2Reveal Functional and Conformational Crosstalk. Mol.Cell, 75, 2019
8I9Z	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Spb4 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9X	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-1 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8IA0	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Puf6 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9R	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State 5S RNP Descriptor: 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, 60S ribosomal protein L16-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9V	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - State Dbp10-2 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9W	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Dbp10-3 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023
8I9Y	Cryo-EM structure of a Chaetomium thermophilum pre-60S ribosomal subunit - Ytm1-2 Descriptor: 60S ribosomal protein L12-like protein, 60S ribosomal protein L13, 60S ribosomal protein L14-like protein, ... Authors: Lau, B, Huang, Z, Beckmann, R, Hurt, E, Cheng, J. Deposit date: 2023-02-07 Release date: 2023-05-17 Last modified: 2023-07-19 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis. Embo Rep., 24, 2023

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