PDB: 2059 resultsInfo pagesStatus searchChemie searchBIRD

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7MJ2	LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with Zn Descriptor: MAGNESIUM ION, Pyridinium-3,5-biscarboxylic acid mononucleotide synthase, ZINC ION Authors: Chatterjee, S, Rankin, J.A, Lagishetty, S, Hu, J, Hausinger, R.P. Deposit date: 2021-04-19 Release date: 2021-09-29 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The LarB carboxylase/hydrolase forms a transient cysteinyl-pyridine intermediate during nickel-pincer nucleotide cofactor biosynthesis. Proc.Natl.Acad.Sci.USA, 118, 2021
6XA1	Structure of a drug-like compound stalled human translation termination complex Descriptor: 18S rRNA, 28S rRNA, 40S ribosomal protein S10, ... Authors: Li, W, Cate, J. Deposit date: 2020-06-03 Release date: 2020-10-07 Last modified: 2020-10-14 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Selective inhibition of human translation termination by a drug-like compound. Nat Commun, 11, 2020
7V86	Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Green fluorescent protein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form To Be Published
7V82	Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Green fluorescent protein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1 To Be Published
7V83	Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Green fluorescent protein, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 2 To Be Published
7V89	Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Angiotensin-converting enzyme 2,Angiotensin-converting enzyme 2 (ACE2) ectodomain, ... Authors: Yang, T.J, Yu, P.Y, Chang, Y.C, Hsu, S.T.D. Deposit date: 2021-08-22 Release date: 2021-10-06 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1 To Be Published
6RMD	Structure of ATP bound Plasmodium falciparum IMP-nucleotidase Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, IMP-specific 5'-nucleotidase, ... Authors: Carrique, L, Ballut, L, Violot, S, Aghajari, N. Deposit date: 2019-05-06 Release date: 2020-07-15 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structure and catalytic regulation of Plasmodium falciparum IMP specific nucleotidase. Nat Commun, 11, 2020
3EK8	Calcium-saturated GCaMP2 T116V/G87R mutant monomer Descriptor: CALCIUM ION, Myosin light chain kinase, Green fluorescent protein, ... Authors: Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R. Deposit date: 2008-09-19 Release date: 2008-12-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design J.Biol.Chem., 284, 2009
8STC	S127A variant of LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with Zinc and soaked with bicarbonate. Descriptor: MAGNESIUM ION, Pyridinium-3,5-biscarboxylic acid mononucleotide synthase, ZINC ION Authors: Chatterjee, S, Rankin, J.A, Hu, J, Hausinger, R.P. Deposit date: 2023-05-09 Release date: 2024-07-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: S127A variant of LarB, a carboxylase/hydrolase involved in synthesis of the cofactor for lactate racemase, in complex with Zinc and soaked with bicarbonate. To be published
7ZJW	Rabbit 80S ribosome as it decodes the Sec-UGA codon Descriptor: 18S rRNA, 28S rRNA, 40S Ribosomal protein eS19, ... Authors: Hilal, T, Simonovic, M, Spahn, C.M.T. Deposit date: 2022-04-12 Release date: 2022-10-19 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure of the mammalian ribosome as it decodes the selenocysteine UGA codon. Science, 376, 2022
3EKJ	Calcium-free GCaMP2 (calcium binding deficient mutant) Descriptor: Myosin light chain kinase, Green fluorescent protein, Calmodulin chimera Authors: Akerboom, J, Velez Rivera, J.D, Looger, L.L, Schreiter, E.R. Deposit date: 2008-09-19 Release date: 2008-12-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal Structures of the GCaMP Calcium Sensor Reveal the Mechanism of Fluorescence Signal Change and Aid Rational Design J.Biol.Chem., 284, 2009
3OGO	Structure of the GFP:GFP-nanobody complex at 2.8 A resolution in spacegroup P21212 Descriptor: GFP-nanobody, Green fluorescent protein, ISOPROPYL ALCOHOL Authors: Kubala, M.H, Kovtun, O, Alexandrov, K, Collins, B.M. Deposit date: 2010-08-17 Release date: 2010-08-25 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and thermodynamic analysis of the GFP:GFP-nanobody complex. Protein Sci., 19, 2010
2ECK	STRUCTURE OF PHOSPHOTRANSFERASE Descriptor: ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ADENYLATE KINASE Authors: Berry, M.B, Bilderback, T, Glaser, M, Phillips Jr, G.N. Deposit date: 1996-12-16 Release date: 1997-03-12 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of ADP/AMP complex of Escherichia coli adenylate kinase. Proteins, 62, 2006
4U4R	Crystal structure of Lactimidomycin bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 4-{(2R,5S,6E)-2-hydroxy-5-methyl-7-[(2R,3S,4E,6Z,10E)-3-methyl-12-oxooxacyclododeca-4,6,10-trien-2-yl]-4-oxooct-6-en-1-yl}piperidine-2,6-dione, ... Authors: Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. Deposit date: 2014-07-24 Release date: 2014-10-22 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.801 Å) Cite: Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
4BD7	Bax domain swapped dimer induced by octylmaltoside Descriptor: APOPTOSIS REGULATOR BAX, CHLORIDE ION, PRASEODYMIUM ION Authors: Czabotar, P.E, Westphal, D, Adams, J.M, Colman, P.M. Deposit date: 2012-10-05 Release date: 2013-02-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.801 Å) Cite: Bax Crystal Structures Reveal How Bh3 Domains Activate Bax and Nucleate its Oligomerization to Induce Apoptosis. Cell(Cambridge,Mass.), 152, 2013
5KTG	Crystal structure of mouse Bak BH3-in-groove homodimer (GFP) Descriptor: Green fluorescent protein, Bcl-2 homologous antagonist/killer Authors: Mandal, T, Choe, J.-Y, Oh, K.J. Deposit date: 2016-07-11 Release date: 2016-08-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.802 Å) Cite: Assembly of Bak homodimers into higher order homooligomers in the mitochondrial apoptotic pore. Sci Rep, 6, 2016
5E8L	Crystal structure of geranylgeranyl pyrophosphate synthase 11 from Arabidopsis thaliana Descriptor: Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic Authors: Wang, C, Chen, Q, Fan, D, Li, J, Wang, G, Zhang, P. Deposit date: 2015-10-14 Release date: 2015-11-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.807 Å) Cite: Structural Analyses of Short-Chain Prenyltransferases Identify an Evolutionarily Conserved GFPPS Clade in Brassicaceae Plants. Mol Plant, 9, 2016
7DNB	Crystal structure of PhoCl barrel Descriptor: PhoCl Barrel, SODIUM ION Authors: Wen, Y, Lemieux, J.M. Deposit date: 2020-12-09 Release date: 2021-01-27 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.81 Å) Cite: Photocleavable proteins that undergo fast and efficient dissociation. Chem Sci, 12, 2021
7CPU	Cryo-EM structure of 80S ribosome from mouse kidney Descriptor: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S13, ... Authors: Huo, Y.G, He, X, Jiang, T, Qin, Y, Guo, X.J, Sha, J.H. Deposit date: 2020-08-08 Release date: 2022-02-02 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (2.82 Å) Cite: A male germ-cell-specific ribosome controls male fertility. Nature, 612, 2022
6D39	Photodissociable dimeric Dronpa green fluorescent protein variant V (pdDronpaV) Descriptor: Fluorescent protein Dronpa, SULFATE ION Authors: Zhou, X, Fan, L, Lin, M. Deposit date: 2018-04-15 Release date: 2018-05-23 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.83 Å) Cite: Optical control of cell signaling by single-chain photoswitchable kinases. Science, 355, 2017
8PMI	Structure of Nal1 indica cultivar IR64, construct 36-458 in presence of peptide from FZP protein Descriptor: ADENOSINE-5'-TRIPHOSPHATE, AMMONIUM ION, MAGNESIUM ION, ... Authors: Huang, L.Y, Rety, S, Xi, X.G. Deposit date: 2023-06-28 Release date: 2024-04-17 Last modified: 2024-06-05 Method: X-RAY DIFFRACTION (2.83 Å) Cite: The catalytic triad of rice NARROW LEAF1 involves H234. Nat.Plants, 10, 2024
4JQ8	Crystal structure of EGFR kinase domain in complex with compound 4b Descriptor: Epidermal growth factor receptor, N-[3-(4-{[(1S)-2-hydroxy-1-phenylethyl]amino}-6-phenylfuro[2,3-d]pyrimidin-5-yl)phenyl]-N~3~,N~3~-dimethyl-beta-alaninamide Authors: Peng, Y.H, Wu, J.S. Deposit date: 2013-03-20 Release date: 2013-06-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.83 Å) Cite: Protein Kinase Inhibitor Design by Targeting the Asp-Phe-Gly (DFG) Motif: The Role of the DFG Motif in the Design of Epidermal Growth Factor Receptor Inhibitors J.Med.Chem., 56, 2013
7X5V	NaVEh Sodium channel, and NaVEh from the coccolithophore Emiliania huxleyi Descriptor: ion channel, ion channel,GFP-TwinStrep Authors: Jiang, D, Zhang, J. Deposit date: 2022-03-05 Release date: 2022-06-01 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (2.83 Å) Cite: N-type fast inactivation of a eukaryotic voltage-gated sodium channel. Nat Commun, 13, 2022
7PWF	Cryo-EM structure of small subunit of Giardia lamblia ribosome at 2.9 A resolution Descriptor: 40S ribosomal protein S21, 40S ribosomal protein S25, 40S ribosomal protein S26, ... Authors: Hiregange, D.G, Rivalta, A, Bose, T, Breiner-Goldstein, E, Samiya, S, Cimicata, G, Kulakova, L, Zimmerman, E, Bashan, A, Herzberg, O, Yonath, A. Deposit date: 2021-10-06 Release date: 2022-05-25 Last modified: 2024-04-24 Method: ELECTRON MICROSCOPY (2.85 Å) Cite: Cryo-EM structure of the ancient eukaryotic ribosome from the human parasite Giardia lamblia. Nucleic Acids Res., 50, 2022
7YV5	genetically encoded pH sensor Lime at pH6 Descriptor: Lime Authors: Wen, Y, Shen, Y, Campbell, R, Lemieux, M.J. Deposit date: 2022-08-18 Release date: 2023-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Rational Engineering of an Improved Genetically Encoded pH Sensor Based on Superecliptic pHluorin. ACS Sens, 8, 2023

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