Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6LXC
DownloadVisualize
BU of 6lxc by Molmil
X-ray structure of human PPARalpha ligand binding domain-saroglitazar co-crystals obtained by delipidation and cross-seeding
Descriptor: (2S)-2-ethoxy-3-[4-[2-[2-methyl-5-(4-methylsulfanylphenyl)pyrrol-1-yl]ethoxy]phenyl]propanoic acid, Peroxisome proliferator-activated receptor alpha
Authors:Kamata, S, Honda, A, Ishikawa, R, Akahane, M, Oyama, T, Ishii, I.
Deposit date:2020-02-10
Release date:2020-11-11
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:PPAR alpha Ligand-Binding Domain Structures with Endogenous Fatty Acids and Fibrates.
Iscience, 23, 2020
8QMY
DownloadVisualize
BU of 8qmy by Molmil
Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase
Descriptor: DI(HYDROXYETHYL)ETHER, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Boverio, A, Mattevi, A.
Deposit date:2023-09-25
Release date:2024-05-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure of ancestral L-galactono-1,4-lactone dehydrogenase
To Be Published
8TD5
DownloadVisualize
BU of 8td5 by Molmil
Structure of PYCR1 complexed with NADH and Tetrahydrothiophene-2-carboxylic acid
Descriptor: (2R)-thiolane-2-carboxylic acid, 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, Pyrroline-5-carboxylate reductase 1, ...
Authors:Tanner, J.J, Meeks, K.R.
Deposit date:2023-07-02
Release date:2024-07-03
Last modified:2024-09-18
Method:X-RAY DIFFRACTION (1.81 Å)
Cite:Screening a knowledge-based library of low molecular weight compounds against the proline biosynthetic enzyme 1-pyrroline-5-carboxylate 1 (PYCR1).
Protein Sci., 33, 2024
8U09
DownloadVisualize
BU of 8u09 by Molmil
Crystal structure of substrate-free SyoA
Descriptor: ACETATE ION, Cytochrome P450, GLYCEROL, ...
Authors:Harlington, A.H, Shearwin, K.E, Bell, S.G, Whelan, F.
Deposit date:2023-08-28
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Structural insights into the S-lignin O-demethylase SyoA
To Be Published
7P0L
DownloadVisualize
BU of 7p0l by Molmil
Crystal structure of S.pombe Mdb1 BRCT domains in complex with a H2A phosphopeptide
Descriptor: DNA damage response protein Mdb1, Histone H2A-beta
Authors:Day, M, Oliver, A.W, Pearl, L.H.
Deposit date:2021-06-29
Release date:2021-12-01
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Phosphorylation-dependent assembly of DNA damage response systems and the central roles of TOPBP1.
DNA Repair (Amst), 108, 2021
8QDY
DownloadVisualize
BU of 8qdy by Molmil
Crystal structure of human MAT2a bound to S-Adenosylmethionine and Compound 8
Descriptor: 3-cyclopropyl-4-(4-methoxyphenyl)-1~{H}-pyrazolo[4,3-c]pyridine, S-ADENOSYLMETHIONINE, S-adenosylmethionine synthase isoform type-2
Authors:Schimpl, M.
Deposit date:2023-08-30
Release date:2024-03-20
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.19 Å)
Cite:Development of a Series of Pyrrolopyridone MAT2A Inhibitors.
J.Med.Chem., 67, 2024
7XPS
DownloadVisualize
BU of 7xps by Molmil
Crystal structrue of MtdL:GDP:Mn
Descriptor: GUANOSINE-5'-DIPHOSPHATE, MANGANESE (II) ION, Transglycosylse
Authors:Li, F.D, He, C.
Deposit date:2022-05-05
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Structures of the NDP-pyranose mutase belonging to glycosyltransferase family 75 reveal residues important for Mn 2+ coordination and substrate binding.
J.Biol.Chem., 299, 2023
7TYQ
DownloadVisualize
BU of 7tyq by Molmil
TEAD2 bound to Compound 1
Descriptor: Transcriptional enhancer factor TEF-4, ethyl (8S)-7-oxo-5-[4-(trifluoromethyl)phenyl]-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carboxylate
Authors:Noland, C.L, Fong, R.
Deposit date:2022-02-14
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.88 Å)
Cite:Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers
To Be Published
7TXF
DownloadVisualize
BU of 7txf by Molmil
The allosteric binding mode of alphaD-conotoxin VxXXB
Descriptor: Acetylcholine-binding protein, Alpha-conotoxin VxXXB
Authors:Ho, T.N.T, Abraham, N, Lewis, R.J.
Deposit date:2022-02-09
Release date:2023-04-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.47 Å)
Cite:Unravelling the allosteric binding mode of alpha D-VxXXB at nicotinic acetylcholine receptors.
Front Pharmacol, 14, 2023
8QAM
DownloadVisualize
BU of 8qam by Molmil
vaccinia virus Uracil DNA glycosidase mutant I197K-V200E-L204K
Descriptor: GLYCEROL, SULFATE ION, Uracil-DNA glycosylase
Authors:Tarbouriech, N, Burmeister, W.P.
Deposit date:2023-08-23
Release date:2024-05-08
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (1.32 Å)
Cite:Structure and flexibility of the DNA polymerase holoenzyme of vaccinia virus.
Plos Pathog., 20, 2024
8TJH
DownloadVisualize
BU of 8tjh by Molmil
TGP-E, extreme thermostable green fluorescent protein (TGP) with Q66E mutation
Descriptor: extreme thermostable green fluorescent protein (TGP-E)
Authors:Anderson, M.R, DeVore, N.M.
Deposit date:2023-07-21
Release date:2024-07-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2 Å)
Cite:The Crystal Structure of Thermal Green Protein Q66E (TGP-E) and Yellow Thermostable Protein (YTP-E) E148D
SynBio, 2, 2024
7XUY
DownloadVisualize
BU of 7xuy by Molmil
Crystal structure of 5-chloro-2-hydroxymuconate tautomerase CnbG
Descriptor: Tautomerase
Authors:Ma, H.L, Li, D.F.
Deposit date:2022-05-20
Release date:2023-03-29
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Structural insights into the substrate specificity of 5-chloro-2-hydroxymuconate tautomerase CnbG.
Biochem.Biophys.Res.Commun., 620, 2022
8U19
DownloadVisualize
BU of 8u19 by Molmil
Crystal structure of SyoA bound to syringol
Descriptor: 2,6-dimethoxyphenol, Cytochrome P450, MAGNESIUM ION, ...
Authors:Harlington, A.C, Shearwin, K.E, Bell, S.G, Whelan, F.
Deposit date:2023-08-31
Release date:2024-07-24
Method:X-RAY DIFFRACTION (1.26 Å)
Cite:Structural insights into the S-lignin O-demethylase SyoA
To Be Published
8QL0
DownloadVisualize
BU of 8ql0 by Molmil
Structure of human PAD6 Phosphomimic mutant V10E/S446E, apo
Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Ranaivoson, F.M, Beaumont, E.
Deposit date:2023-09-18
Release date:2024-05-08
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.675 Å)
Cite:Crystal structure of human peptidylarginine deiminase type VI (PAD6) provides insights into its inactivity.
Iucrj, 11, 2024
7OTX
DownloadVisualize
BU of 7otx by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND INHIBITOR RMC-257
Descriptor: (S)-2-((3-(6-amino-9H-purin-9-yl)propyl)amino)-3-phosphonopropanoic acid, DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)P*CP*GP*CP*CP*(DDG))-3'), DNA (5'-D(P*GP*GP*TP*CP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*G)-3'), ...
Authors:Martinez, S.E, Singh, A.K, Gu, W, Das, K.
Deposit date:2021-06-10
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.45 Å)
Cite:Exploring the dNTP -binding site of HIV-1 reverse transcriptase for inhibitor design.
Eur.J.Med.Chem., 225, 2021
5CFN
DownloadVisualize
BU of 5cfn by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
7TYU
DownloadVisualize
BU of 7tyu by Molmil
TEAD2 bound to Compound 2
Descriptor: (3R)-1-[(8S)-5-(4-cyclohexylphenyl)-7-oxo-4,7-dihydropyrazolo[1,5-a]pyrimidine-3-carbonyl]pyrrolidine-3-carbonitrile, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Transcriptional enhancer factor TEF-4
Authors:Noland, C.L, Fong, R.
Deposit date:2022-02-14
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers
To Be Published
6M01
DownloadVisualize
BU of 6m01 by Molmil
The structure of HitB-HitD complex
Descriptor: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, N-[2-(acetylamino)ethyl]-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide, ...
Authors:Miyanaga, A, Kurihara, S, Kudo, F, Eguchi, T.
Deposit date:2020-02-19
Release date:2020-07-08
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural Characterization of Complex of Adenylation Domain and Carrier Protein by Using Pantetheine Cross-Linking Probe.
Acs Chem.Biol., 15, 2020
7OKM
DownloadVisualize
BU of 7okm by Molmil
Crystal structure of human BCL6 BTB domain in complex with compound 13g
Descriptor: 1,2-ETHANEDIOL, 2-chloranyl-4-[[1-methyl-2-oxidanylidene-4-(2-pyrimidin-2-ylpropan-2-ylamino)quinolin-6-yl]amino]pyridine-3-carbonitrile, ALA-TRP-VAL-ILE-PRO-ALA, ...
Authors:Rodrigues, M.J, Le Bihan, Y.-V, van Montfort, R.L.M.
Deposit date:2021-05-17
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.48 Å)
Cite:Into Deep Water: Optimizing BCL6 Inhibitors by Growing into a Solvated Pocket.
J.Med.Chem., 64, 2021
5FT5
DownloadVisualize
BU of 5ft5 by Molmil
Crystal structure of the cysteine desulfurase CsdA (persulfurated) from Escherichia coli at 2.384 Angstroem resolution
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, L(+)-TARTARIC ACID, ...
Authors:Fernandez, F.J, Arda, A, Lopez-Estepa, M, Aranda, J, Penya-Soler, E, Garces, F, Quintana, J.F, Round, A, Campos-Oliva, R, Bruix, M, Coll, M, Tunon, I, Jimenez-Barbero, J, Vega, M.C.
Deposit date:2016-01-11
Release date:2016-11-23
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.384 Å)
Cite:Mechanism of Sulfur Transfer Across Protein-Protein Interfaces: The Cysteine Desulfurase Model System
Acs Catalysis, 6, 2016
8JOK
DownloadVisualize
BU of 8jok by Molmil
Crystal structure of V30L mutated human transthyretin
Descriptor: MAGNESIUM ION, Transthyretin
Authors:Mizuguchi, M, Yamada, S, Obita, T.
Deposit date:2023-06-07
Release date:2024-04-17
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Trypsin-induced aggregation of transthyretin Valine 30 variants associated with hereditary amyloidosis.
Febs J., 291, 2024
7TYP
DownloadVisualize
BU of 7typ by Molmil
TEAD2 bound to GNE-7883
Descriptor: (8S)-5-(4-cyclohexylphenyl)-3-[3-(fluoromethyl)azetidine-1-carbonyl]-2-(3-methylpyrazin-2-yl)pyrazolo[1,5-a]pyrimidin-7(4H)-one, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Transcriptional enhancer factor TEF-4
Authors:Noland, C.L, Fong, R.
Deposit date:2022-02-14
Release date:2023-05-03
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Novel mechanism of YAP-TEAD inhibition results in targeted chromatin remodeling and reveals an expanded Hippo dependent landscape in cancers
To Be Published
7TV2
DownloadVisualize
BU of 7tv2 by Molmil
X-ray crystal structure of HIV-2 CA protein CTD
Descriptor: Capsid protein p24
Authors:Shi, K, Aihara, H.
Deposit date:2022-02-03
Release date:2023-05-17
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:HIV-2 Immature Particle Morphology Provides Insights into Gag Lattice Stability and Virus Maturation.
J.Mol.Biol., 435, 2023
7OT6
DownloadVisualize
BU of 7ot6 by Molmil
HIV-1 REVERSE TRANSCRIPTASE COMPLEX WITH DNA AND inhibitor RMC-282
Descriptor: (R)-N-(1-(6-amino-9H-purin-9-yl)propan-2-yl)-N-(2-phosphonoethyl)glycine, DNA (5'-D(*AP*TP*GP*GP*AP*AP*GP*GP*CP*GP*CP*CP*CP*GP*AP*AP*CP*AP*GP*GP*GP*AP*CP*TP*GP*TP*G)-3'), DNA (5'-D(*CP*AP*GP*TP*CP*CP*CP*TP*GP*TP*TP*CP*GP*GP*(MRG)*CP*GP*CP*CP*(DDG))-3'), ...
Authors:Martinez, S.E, Singh, A.K, Gu, W, Das, K.
Deposit date:2021-06-09
Release date:2021-12-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Exploring the dNTP -binding site of HIV-1 reverse transcriptase for inhibitor design.
Eur.J.Med.Chem., 225, 2021
5CLO
DownloadVisualize
BU of 5clo by Molmil
Crystal structure of a 4-oxalocrotonate tautomerase mutant in complex with nitrostyrene at 2.3 Angstrom
Descriptor: 2-hydroxymuconate tautomerase, trans beta nitrostyrene
Authors:Thunnissen, A.M.W.H, Poddar, H.
Deposit date:2015-07-16
Release date:2016-03-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Using mutability landscapes of a promiscuous tautomerase to guide the engineering of enantioselective Michaelases.
Nat Commun, 7, 2016

226707

數據於2024-10-30公開中

PDB statisticsPDBj update infoContact PDBjnumon