PDB: 19260 resultsInfo pagesStatus searchChemie searchBIRD

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4E8U	Crystal structure of Arabidopsis IDN2 XS domain along with a small segment of adjacent coiled-coil region Descriptor: Putative uncharacterized protein T8P19.180, SULFATE ION Authors: Simanshu, D.K, Patel, D.J. Deposit date: 2012-03-20 Release date: 2012-06-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.701 Å) Cite: INVOLVED IN DE NOVO 2-containing complex involved in RNA-directed DNA methylation in Arabidopsis. Proc.Natl.Acad.Sci.USA, 109, 2012
4ECG	Crystal structure of a putative iron-regulated protein A precursor (BDI_2603) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution Descriptor: CALCIUM ION, CHLORIDE ION, PENTAETHYLENE GLYCOL, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-03-26 Release date: 2012-04-11 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structure of a putative iron-regulated protein A precursor (BDI_2603) from Parabacteroides distasonis ATCC 8503 at 2.30 A resolution To be published
4EDZ	Crystal structure of hH-PGDS with water displacing inhibitor Descriptor: 4-(3-methylisoquinolin-1-yl)-N-[2-(morpholin-4-yl)ethyl]benzamide, GLUTATHIONE, Hematopoietic prostaglandin D synthase, ... Authors: Day, J.E, Thorarensen, A, Trujillo, J.I. Deposit date: 2012-03-27 Release date: 2012-05-16 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Investigation of the binding pocket of human hematopoietic prostaglandin (PG) D2 synthase (hH-PGDS): a tale of two waters. Bioorg.Med.Chem.Lett., 22, 2012
4EED	CorA coiled-coil mutant under Mg2+ presence Descriptor: MAGNESIUM ION, Magnesium transport protein CorA Authors: Pfoh, R, Pai, E.F. Deposit date: 2012-03-28 Release date: 2012-11-14 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.92 Å) Cite: Structural asymmetry in the magnesium channel CorA points to sequential allosteric regulation. Proc.Natl.Acad.Sci.USA, 109, 2012
4EG0	Crystal Structure of D-alanine--D-alanine ligase from Burkholderia ambifaria Descriptor: 1,2-ETHANEDIOL, D-alanine--D-alanine ligase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2012-03-30 Release date: 2012-05-09 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Combining functional and structural genomics to sample the essential Burkholderia structome. Plos One, 8, 2013
4EEZ	Crystal Structure of Lactococcus lactis Alcohol Dehydrogenase variant RE1 Descriptor: Alcohol dehydrogenase 1, TETRAETHYLENE GLYCOL, ZINC ION Authors: Liu, X, Bastian, S, Snow, C.D, Brustad, E.M, Saleski, T, Xu, J.H, Meinhold, P, Arnold, F.H. Deposit date: 2012-03-28 Release date: 2012-09-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structure-guided engineering of Lactococcus lactis alcohol dehydrogenase LlAdhA for improved conversion of isobutyraldehyde to isobutanol. J.Biotechnol., 164, 2012
4EI7	Crystal structure of Bacillus cereus TubZ, GDP-form Descriptor: GUANOSINE-5'-DIPHOSPHATE, Plasmid replication protein RepX Authors: Hayashi, I, Hoshino, S. Deposit date: 2012-04-05 Release date: 2012-08-15 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Filament formation of the FtsZ/tubulin-like protein TubZ from the Bacillus cereus pXO1 plasmid. J.Biol.Chem., 287, 2012
4EH7	Human p38 MAP kinase in complex with NP-F6 and RL87 Descriptor: (3-phenoxyphenyl)methanol, Mitogen-activated protein kinase 14, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine Authors: Over, B, Gruetter, C, Waldmann, H, Rauh, D. Deposit date: 2012-04-02 Release date: 2012-12-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem, 5, 2012
4H4J	Crystal structure of a N-acetylmuramoyl-L-alanine amidase (BACUNI_02947) from Bacteroides uniformis ATCC 8492 at 1.15 A resolution Descriptor: hypothetical protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-09-17 Release date: 2012-10-17 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Structure-guided functional characterization of DUF1460 reveals a highly specific NlpC/P60 amidase family. Structure, 22, 2014
4H54	Crystal structure of the diguanylate cyclase DgcZ Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Diguanylate cyclase YdeH, GUANOSINE-5'-RP-ALPHA-THIO-TRIPHOSPHATE, ... Authors: Zaehringer, F, Schirmer, T. Deposit date: 2012-09-18 Release date: 2013-07-03 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Structure and signaling mechanism of a zinc-sensory diguanylate cyclase. Structure, 21, 2013
7LYG	Zika virus RNA promoter stem-loop A with tRNA-scaffold Descriptor: RNA promoter stem-loop A fused with tRNA Authors: Lee, E.H, Choi, K.H. Deposit date: 2021-03-06 Release date: 2021-05-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.804 Å) Cite: Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase. Nat Commun, 12, 2021
7LYF	Dengue virus RNA promoter stem-loop A fused with tRNA-scaffold Descriptor: MAGNESIUM ION, RNA promoter stem-loop A fused with tRNA Authors: Lee, E.H, Choi, K.H. Deposit date: 2021-03-06 Release date: 2021-05-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structures of flavivirus RNA promoters suggest two binding modes with NS5 polymerase. Nat Commun, 12, 2021
4HBS	Crystal structure of a putative hydrolase (BACOVA_04882) from Bacteroides ovatus ATCC 8483 at 2.80 A resolution Descriptor: GLYCEROL, Putative hydrolase Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-09-28 Release date: 2012-10-24 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of a putative hydrolase (BACOVA_04882) from Bacteroides ovatus ATCC 8483 at 2.80 A resolution To be published
4F54	Crystal structure of a DUF4136 family protein (BT2437) from Bacteroides thetaiotaomicron VPI-5482 at 1.60 A resolution Descriptor: CHLORIDE ION, SULFATE ION, Uncharacterized protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-05-11 Release date: 2012-07-11 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of a hypothetical protein (BT2437) from Bacteroides thetaiotaomicron VPI-5482 at 1.60 A resolution To be published
4FJY	Crystal structure of PI3K-gamma in complex with quinoline-indoline inhibitor 24f Descriptor: 4-[3,3-dimethyl-6-(morpholin-4-yl)-2,3-dihydro-1H-indol-1-yl]-7-fluoro-3-methyl-2-(pyridin-3-yl)quinoline, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform, SULFATE ION Authors: Whittington, D.A, Tang, J, Yakowec, P. Deposit date: 2012-06-12 Release date: 2012-10-24 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Discovery and in Vivo Evaluation of Dual PI3K-beta/delta inhibitors J.Med.Chem., 55, 2012
7M5D	Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Zhang, J. Deposit date: 2021-03-23 Release date: 2022-10-19 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I) To Be Published
4E6B	Crystal Structure of statistically disordered 19mer duplex p(CGG)3C(CUG)3 Descriptor: 5'-R(P*CP*GP*GP*CP*GP*GP*CP*GP*GP*CP*CP*UP*GP*CP*UP*GP*CP*UP*G)-3' Authors: Malinina, L, Popov, A, Tamjar, J. Deposit date: 2012-03-15 Release date: 2012-07-11 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.47 Å) Cite: Structural dynamics of double-helical RNAs composed of CUG/CUG- and CUG/CGG-repeats. J.Biomol.Struct.Dyn., 30, 2012
4E6R	Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution Descriptor: Cytoplasmic protein NCK2, IMIDAZOLE, UNKNOWN LIGAND, ... Authors: Joint Center for Structural Genomics (JCSG), Partnership for T-Cell Biology (TCELL) Deposit date: 2012-03-15 Release date: 2012-04-04 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution To be published
4EDT	The structure of the S. aureus DnaG RNA Polymerase Domain bound to ppGpp and Manganese Descriptor: BENZAMIDINE, DNA primase, GUANOSINE-5',3'-TETRAPHOSPHATE, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.005 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4E7A	Crystal structure of a product state assembly of HCV NS5B genotype 2a JFH-1 isolate with beta hairpin deletion bound to primer-template RNA with a 2',3'-ddC Descriptor: 5'-R(*CP*AP*UP*GP*GP*C)-D(P*(DOC))-3', RNA-directed RNA polymerase Authors: Edwards, T.E, Mosley, R.T. Deposit date: 2012-03-16 Release date: 2012-04-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Structure of hepatitis C virus polymerase in complex with primer-template RNA. J.Virol., 86, 2012
4EDR	The structure of the S. aureus DnaG RNA Polymerase Domain bound to UTP and Manganese Descriptor: BENZAMIDINE, DNA primase, MANGANESE (II) ION, ... Authors: Rymer, R.U, Solorio, F.A, Chu, C, Corn, J.E, Wang, J.D, Berger, J.M. Deposit date: 2012-03-27 Release date: 2012-07-25 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Binding Mechanism of Metal-NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases. Structure, 20, 2012
4EH3	Human p38 MAP kinase in complex with NP-F2 and RL87 Descriptor: Mitogen-activated protein kinase 14, NARINGENIN, N~4~-cyclopropyl-2-phenylquinazoline-4,7-diamine Authors: Over, B, Gruetter, C, Waldmann, H, Rauh, D. Deposit date: 2012-04-02 Release date: 2012-12-05 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Natural-product-derived fragments for fragment-based ligand discovery. Nat Chem, 5, 2012
4EHY	Crystal structure of LpxK from Aquifex aeolicus in complex with ADP/Mg2+ at 2.2 angstrom resolution Descriptor: ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, GLYCEROL, ... Authors: Emptage, R.P, Daughtry, K.D, Pemble IV, C.W, Raetz, C.R.H. Deposit date: 2012-04-04 Release date: 2012-08-29 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.199 Å) Cite: Crystal structure of LpxK, the 4'-kinase of lipid A biosynthesis and atypical P-loop kinase functioning at the membrane interface. Proc.Natl.Acad.Sci.USA, 109, 2012
4EIU	Crystal structure of a DUF3823 family protein (BACUNI_03093) from Bacteroides uniformis ATCC 8492 at 1.90 A resolution Descriptor: DI(HYDROXYETHYL)ETHER, TRIETHYLENE GLYCOL, uncharacterized hypothetical protein Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2012-04-05 Release date: 2012-05-30 Last modified: 2023-02-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of a hypothetical protein (BACUNI_03093) from Bacteroides uniformis ATCC 8492 at 1.90 A resolution To be published
7MIT	Vascular KATP channel: Kir6.1 SUR2B propeller-like conformation 1 Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 5-chloro-N-(2-{4-[(cyclohexylcarbamoyl)sulfamoyl]phenyl}ethyl)-2-methoxybenzamide, ... Authors: Sung, M.W, Shyng, S.L. Deposit date: 2021-04-17 Release date: 2021-10-13 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Vascular K ATP channel structural dynamics reveal regulatory mechanism by Mg-nucleotides. Proc.Natl.Acad.Sci.USA, 118, 2021

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