PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3JCD	Structure of Escherichia coli EF4 in posttranslocational ribosomes (Post EF4) Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y. Deposit date: 2015-12-01 Release date: 2016-01-13 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome Nat. Struct. Mol. Biol., 23, 2016
3JCE	Structure of Escherichia coli EF4 in pretranslocational ribosomes (Pre EF4) Descriptor: 16S ribosomal RNA, 23 ribosomal RNA, 30S ribosomal protein S10, ... Authors: Zhang, D, Yan, K, Liu, G, Song, G, Luo, J, Shi, Y, Cheng, E, Wu, S, Jiang, T, Low, J, Gao, N, Qin, Y. Deposit date: 2015-12-01 Release date: 2016-01-13 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: EF4 disengages the peptidyl-tRNA CCA end and facilitates back-translocation on the 70S ribosome Nat. Struct. Mol. Biol., 23, 2016
7YFX	Cryo-EM structure of Hili in complex with piRNA Descriptor: MAGNESIUM ION, Piwi-like protein 2, piRNA Authors: Li, Z.Q, Liu, H.B, Wu, J.P, Shen, E.Z. Deposit date: 2022-07-09 Release date: 2024-01-24 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Mammalian PIWI-piRNA-target complexes reveal features for broad and efficient target silencing. Nat.Struct.Mol.Biol., 2024
6SPC	Pseudomonas aeruginosa 30s ribosome from an aminoglycoside resistant clinical isolate Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Halfon, Y, Jimenez-Fernande, A, La Ros, R, Espinos, R, Krogh Johansen, H, Matzov, D, Eyal, Z, Bashan, A, Zimmerman, E, Belousoff, M, Molin, S, Yonath, A. Deposit date: 2019-09-01 Release date: 2019-10-16 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structure ofPseudomonas aeruginosaribosomes from an aminoglycoside-resistant clinical isolate. Proc.Natl.Acad.Sci.USA, 116, 2019
8BWS	Structure of yeast RNA Polymerase III elongation complex at 3.3 A Descriptor: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Nguyen, P.Q, Fernandez-Tornero, C. Deposit date: 2022-12-07 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
7Z2Z	Structure of yeast RNA Polymerase III-DNA-Ty1 integrase complex (Pol III-DNA-IN1) at 3.1 A Descriptor: (3R,5S,7R,8R,9S,10S,12S,13R,14S,17R)-10,13-dimethyl-17-[(2R)-pentan-2-yl]-2,3,4,5,6,7,8,9,11,12,14,15,16,17-tetradecahydro-1H-cyclopenta[a]phenanthrene-3,7,12-triol, DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, ... Authors: Nguyen, P.Q, Fernandez-Tornero, C. Deposit date: 2022-03-01 Release date: 2023-04-05 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Structural basis of Ty1 integrase tethering to RNA polymerase III for targeted retrotransposon integration. Nat Commun, 14, 2023
5XLN	Crystal structure of the TRS_UNE-T and 4EHP complex Descriptor: Eukaryotic translation initiation factor 4E type 2, Threonine--tRNA ligase, cytoplasmic Authors: Hwang, J, Nguyen, L.T, Kim, M.H. Deposit date: 2017-05-11 Release date: 2018-11-21 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A threonyl-tRNA synthetase-mediated translation initiation machinery. Nat Commun, 10, 2019
7S3C	Crystal structure of intact U2AF65 RRM-region bound to AdML-A5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*AP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit Authors: Glasser, E, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.51 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
7S3A	Crystal structure of intact U2AF65 RRM-region bound to AdML-C5 oligonucleotide Descriptor: DNA/RNA (5'-R(P*UP*UP*(UD)P*CP*U)-D(P*(BRU))-R(P*CP*C)-3'), SODIUM ION, Splicing factor U2AF 65 kDa subunit Authors: Jenkins, J.L, Henderson, S, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.48 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
8PV4	Chaetomium thermophilum pre-60S State 2 - pre-5S rotation with Rix1 complex - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
7S3B	Crystal structure of intact U2AF65 RRM-region bound to AdML-G5 oligonucleotide Descriptor: DI(HYDROXYETHYL)ETHER, DNA/RNA (5'-R(P*UP*UP*(UD)P*GP*U)-D(P*(BRU))-R(P*CP*C)-3'), Splicing factor U2AF 65 kDa subunit Authors: Jenkins, J.L, Henderson, S, Kielkopf, C.L. Deposit date: 2021-09-05 Release date: 2022-05-25 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Pre-mRNA splicing factor U2AF2 recognizes distinct conformations of nucleotide variants at the center of the pre-mRNA splice site signal. Nucleic Acids Res., 50, 2022
8PV6	Chaetomium thermophilum pre-60S State 3 - post-5S rotation with Rix1 complex with Foot - composite structure Descriptor: 26S rRNA, 5.8S rRNA, 5S rRNA, ... Authors: Thoms, M, Cheng, J, Denk, T, Berninghausen, O, Beckmann, R. Deposit date: 2023-07-17 Release date: 2023-11-15 Last modified: 2023-12-20 Method: ELECTRON MICROSCOPY (2.94 Å) Cite: Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation. Embo Rep., 24, 2023
4TUA	Crystal structure of ASL-Thr bound to Codon ACC-A on the Ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fagan, C.E, Dunham, C.M. Deposit date: 2014-06-24 Release date: 2015-05-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUC	Crystal structure of ASL-SufJ bound to Codon ACC-A on the Ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fagan, C.E, Dunham, C.M. Deposit date: 2014-06-24 Release date: 2015-05-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
4TUD	Crystal structure of ASL-SufJ bound to Codon ACC-C on the Ribosome Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Fagan, C.E, Dunham, C.M. Deposit date: 2014-06-24 Release date: 2015-05-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural insights into translational recoding by frameshift suppressor tRNASufJ. Rna, 20, 2014
7OQB	The U2 part of Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) Descriptor: ACT1 pre-mRNA (delta-BS-A), Cold sensitive U2 snRNA suppressor 1, Pre-mRNA-processing ATP-dependent RNA helicase PRP5, ... Authors: Zhang, Z, Rigo, N, Dybkov, O, Fourmann, J, Will, C.L, Kumar, V, Urlaub, H, Stark, H, Luehrmann, R. Deposit date: 2021-06-03 Release date: 2021-08-11 Last modified: 2021-09-22 Method: ELECTRON MICROSCOPY (9 Å) Cite: Structural insights into how Prp5 proofreads the pre-mRNA branch site. Nature, 596, 2021
7OQE	Saccharomyces cerevisiae spliceosomal pre-A complex (delta BS-A ACT1) Descriptor: 56 kDa U1 small nuclear ribonucleoprotein component, ACT1 pre-mRNA (delta BS-A), Cold sensitive U2 snRNA suppressor 1, ... Authors: Zhang, Z, Rigo, N, Dybkov, O, Fourmann, J, Will, C.L, Kumar, V, Urlaub, H, Stark, H, Luehrmann, R. Deposit date: 2021-06-03 Release date: 2021-08-11 Last modified: 2021-09-29 Method: ELECTRON MICROSCOPY (5.9 Å) Cite: Structural insights into how Prp5 proofreads the pre-mRNA branch site. Nature, 596, 2021
6LVR	Crystal structure of the PPR domain of Arabidopsis thaliana protein-only RNase P 1 (PRORP1) in complex with tRNA Descriptor: Proteinaceous RNase P 1, chloroplastic/mitochondrial, yeast phenylalanine tRNA Authors: Teramoto, T, Hall, T.M.T. Deposit date: 2020-02-04 Release date: 2020-08-12 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.85 Å) Cite: Pentatricopeptide repeats of protein-only RNase P use a distinct mode to recognize conserved bases and structural elements of pre-tRNA. Nucleic Acids Res., 48, 2020
7U2B	Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA(GCU-TL) Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, RNA (53-MER), Serine--tRNA ligase, ... Authors: Hirschi, M, Kuhle, B, Doerfel, L, Schimmel, P, Lander, G. Deposit date: 2022-02-23 Release date: 2022-09-14 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA. Nat Commun, 13, 2022
7U2A	Cryo-electron microscopy structure of human mt-SerRS in complex with mt-tRNA (GCU) Descriptor: 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, RNA (38-MER), Serine--tRNA ligase, ... Authors: Hirschi, M, Kuhle, B, Doerfel, L, Schimmel, P, Lander, G. Deposit date: 2022-02-23 Release date: 2022-09-14 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Structural basis for shape-selective recognition and aminoacylation of a D-armless human mitochondrial tRNA. Nat Commun, 13, 2022
5ZEB	M. Smegmatis P/P state 70S ribosome structure Descriptor: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-27 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
5ZET	M. smegmatis P/P state 50S ribosomal subunit Descriptor: 23S rRNA, 50S ribosomal protein L10, 50S ribosomal protein L11, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-28 Release date: 2018-09-26 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018
7P6X	Cryo-Em structure of the hexameric RUVBL1-RUVBL2 in complex with ZNHIT2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, RuvB-like 1, RuvB-like 2 Authors: Llorca, O, Serna, M, Fernandez-Leiro, R. Deposit date: 2021-07-18 Release date: 2021-12-15 Last modified: 2023-01-25 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: CryoEM of RUVBL1-RUVBL2-ZNHIT2, a complex that interacts with pre-mRNA-processing-splicing factor 8. Nucleic Acids Res., 50, 2022
7NQ4	Human tRNA guanine transglycosylase (TGT), RNA-bound covalent intermediate Descriptor: 9-DEAZAGUANINE, Queuine tRNA-ribosyltransferase accessory subunit 2, Queuine tRNA-ribosyltransferase catalytic subunit 1, ... Authors: Sievers, K, Ficner, R. Deposit date: 2021-03-01 Release date: 2021-08-11 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.88 Å) Cite: Structural and functional insights into human tRNA guanine transgylcosylase. Rna Biol., 18, 2021
5ZEU	M. smegmatis P/P state 30S ribosomal subunit Descriptor: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... Authors: Mishra, S, Ahmed, T, Tyagi, A, Shi, J, Bhushan, S. Deposit date: 2018-02-28 Release date: 2018-09-26 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structures of Mycobacterium smegmatis 70S ribosomes in complex with HPF, tmRNA, and P-tRNA. Sci Rep, 8, 2018

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