1M08
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![BU of 1m08 by Molmil](/molmil-images/mine/1m08) | Crystal structure of the unbound nuclease domain of ColE7 | Descriptor: | Colicin E7, PHOSPHATE ION, ZINC ION | Authors: | Cheng, Y.S, Hsia, K.C, Doudeva, L.G, Chak, K.F, Yuan, H.S. | Deposit date: | 2002-06-12 | Release date: | 2002-12-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (2.1 Å) | Cite: | The Crystal Structure of the Nuclease Domain of Colicin E7 Suggests a Mechanism for Binding to Double-stranded DNA by the H-N-H Endonucleases J.mol.biol., 324, 2002
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7YKN
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![BU of 7ykn by Molmil](/molmil-images/mine/7ykn) | Crystal structure of (6-4) photolyase from Vibrio cholerae | Descriptor: | 1-deoxy-1-(6,7-dimethyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol, Cryptochrome/photolyase family protein, FLAVIN-ADENINE DINUCLEOTIDE, ... | Authors: | Cakilkaya, B, Kavakli, I.H, DeMirci, H. | Deposit date: | 2022-07-23 | Release date: | 2022-12-21 | Last modified: | 2023-11-29 | Method: | X-RAY DIFFRACTION (2.5 Å) | Cite: | The crystal structure of Vibrio cholerae (6-4) photolyase reveals interactions with cofactors and a DNA-binding region. J.Biol.Chem., 299, 2023
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1CYZ
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![BU of 1cyz by Molmil](/molmil-images/mine/1cyz) | NMR STRUCTURE OF THE GAACTGGTTC/TRI-IMIDAZOLE POLYAMIDE COMPLEX | Descriptor: | (2-{[4-({4-[(4-FORMYLAMINO-1-METHYL-1H-IMIDAZOLE-2-CARBONYL)-AMINO]-1-METHYL-1H-IMIDAZOLE-2-CARBONYL}-AMINO)-1-METHYL-1 H-IMIDAZOLE-2-CARBONYL]-AMINO}-ETHYL)-DIMETHYL-AMMONIUM, 5'-D(*GP*AP*AP*CP*TP*GP*GP*TP*TP*C)-3' | Authors: | Yang, X.-L, Hubbard IV, R.B, Lee, M, Tao, Z.-F, Sugiyama, H, Wang, A.H.-J. | Deposit date: | 1999-08-31 | Release date: | 1999-09-14 | Last modified: | 2024-05-22 | Method: | SOLUTION NMR | Cite: | Imidazole-imidazole pair as a minor groove recognition motif for T:G mismatched base pairs Nucleic Acids Res., 27, 1999
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4A3N
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![BU of 4a3n by Molmil](/molmil-images/mine/4a3n) | Crystal Structure of HMG-BOX of Human SOX17 | Descriptor: | TRANSCRIPTION FACTOR SOX-17, ZINC ION | Authors: | Gao, N, Gao, H, Qian, H, Si, S, Xie, Y. | Deposit date: | 2011-10-01 | Release date: | 2011-12-28 | Last modified: | 2023-12-20 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural Basis of Human Transcription Factor Sry-Related Box 17 Binding to DNA. Protein Pept.Lett., 20, 2013
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1UTX
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![BU of 1utx by Molmil](/molmil-images/mine/1utx) | Regulation of Cytolysin Expression by Enterococcus faecalis: Role of CylR2 | Descriptor: | CYLR2, IODIDE ION, SODIUM ION | Authors: | Razeto, A, Rumpel, S, Pillar, C.M, Gilmore, M.S, Becker, S, Zweckstetter, M. | Deposit date: | 2003-12-12 | Release date: | 2004-09-16 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (1.9 Å) | Cite: | Structure and DNA-Binding Properties of the Cytolysin Regulator CylR2 from Enterococcus Faecalis Embo J., 23, 2004
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2EYQ
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![BU of 2eyq by Molmil](/molmil-images/mine/2eyq) | |
2A3S
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![BU of 2a3s by Molmil](/molmil-images/mine/2a3s) | |
2EFO
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![BU of 2efo by Molmil](/molmil-images/mine/2efo) | Crystal structure of Tyr77 to Ala of ST1022 from Sulfolobus tokodaii 7 | Descriptor: | 150aa long hypothetical transcriptional regulator, MAGNESIUM ION | Authors: | Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-02-23 | Release date: | 2008-02-26 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding. Nucleic Acids Res., 36, 2008
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2EFQ
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![BU of 2efq by Molmil](/molmil-images/mine/2efq) | Crystal Structure of Thr134 to Ala of ST1022-Glutamine Complex from Sulfolobus tokodaii 7 | Descriptor: | 150aa long hypothetical transcriptional regulator, GLUTAMINE, MAGNESIUM ION | Authors: | Kumarevel, T.S, Karthe, P, Nakano, N, Shinkai, A, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) | Deposit date: | 2007-02-23 | Release date: | 2008-03-04 | Last modified: | 2023-10-25 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Crystal structure of glutamine receptor protein from Sulfolobus tokodaii strain 7 in complex with its effector L-glutamine: implications of effector binding in molecular association and DNA binding. Nucleic Acids Res., 36, 2008
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1IR5
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![BU of 1ir5 by Molmil](/molmil-images/mine/1ir5) | Solution Structure of the 17mer TF1 Binding Site | Descriptor: | 5'-D(*CP*AP*CP*TP*AP*CP*AP*AP*AP*GP*AP*GP*TP*AP*GP*TP*G)-3', 5'-D(*CP*AP*CP*TP*AP*CP*TP*CP*TP*TP*TP*GP*TP*AP*GP*TP*G)-3' | Authors: | Liu, W, Vu, H.M, Kearns, D.R. | Deposit date: | 2001-09-07 | Release date: | 2003-09-23 | Last modified: | 2023-12-27 | Method: | SOLUTION NMR | Cite: | 1H NMR studies of a 17-mer DNA duplex ACTA BIOCHIM.BIOPHYS.SINICA, 1574, 2002
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1ATN
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![BU of 1atn by Molmil](/molmil-images/mine/1atn) | Atomic structure of the actin:DNASE I complex | Descriptor: | ACTIN, ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, ... | Authors: | Kabsch, W, Mannherz, H.G, Suck, D, Pai, E, Holmes, K.C. | Deposit date: | 1991-03-08 | Release date: | 1992-07-15 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.8 Å) | Cite: | Atomic structure of the actin:DNase I complex. Nature, 347, 1990
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6SJ9
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![BU of 6sj9 by Molmil](/molmil-images/mine/6sj9) | Proteasome accessory factor B/C (PafBC) of Arthrobacter aurescens | Descriptor: | DI(HYDROXYETHYL)ETHER, POTASSIUM ION, Proteasome accessory factor B/C (PafBC), ... | Authors: | Mueller, A.U, Leibundgut, M, Ban, N, Weber-Ban, E. | Deposit date: | 2019-08-13 | Release date: | 2019-10-16 | Last modified: | 2019-10-23 | Method: | X-RAY DIFFRACTION (2.2 Å) | Cite: | Structure and functional implications of WYL domain-containing bacterial DNA damage response regulator PafBC. Nat Commun, 10, 2019
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2UYH
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![BU of 2uyh by Molmil](/molmil-images/mine/2uyh) | |
3WPF
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![BU of 3wpf by Molmil](/molmil-images/mine/3wpf) | Crystal structure of mouse TLR9 (unliganded form) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, Toll-like receptor 9 | Authors: | Ohto, U, Shimizu, T. | Deposit date: | 2014-01-11 | Release date: | 2015-02-11 | Last modified: | 2023-11-08 | Method: | X-RAY DIFFRACTION (1.959 Å) | Cite: | Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
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2VLD
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![BU of 2vld by Molmil](/molmil-images/mine/2vld) | crystal structure of a repair endonuclease from Pyrococcus abyssi | Descriptor: | Endonuclease NucS | Authors: | Ren, B, Kuhn, J, Meslet-Cladiere, L, Briffotaux, J, Norais, C, Lavigne, R, Flament, D, Ladenstein, R, Myllykallio, H. | Deposit date: | 2008-01-14 | Release date: | 2009-05-19 | Last modified: | 2018-09-26 | Method: | X-RAY DIFFRACTION (2.6 Å) | Cite: | Structure and function of a novel endonuclease acting on branched DNA substrates. EMBO J., 28, 2009
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5CFE
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![BU of 5cfe by Molmil](/molmil-images/mine/5cfe) | Bacillus subtilis AP endonuclease ExoA | Descriptor: | CALCIUM ION, DI(HYDROXYETHYL)ETHER, Exodeoxyribonuclease | Authors: | Morera, S, Vigouroux, A. | Deposit date: | 2015-07-08 | Release date: | 2016-07-06 | Last modified: | 2024-01-10 | Method: | X-RAY DIFFRACTION (1.84 Å) | Cite: | Structural comparison of AP endonucleases from the exonuclease III family reveals new amino acid residues in human AP endonuclease 1 that are involved in incision of damaged DNA. Biochimie, 128-129, 2016
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3IMB
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![BU of 3imb by Molmil](/molmil-images/mine/3imb) | Alternative binding mode of restriction endonuclease BcnI to cognate DNA | Descriptor: | 5'-D(*CP*GP*CP*CP*CP*GP*GP*AP*C)-3', 5'-D(*GP*TP*CP*CP*GP*GP*GP*CP*G)-3', R.BcnI | Authors: | Sokolowska, M, Kaus-Drobek, M, Czapinska, H, Tamulaitis, G, Szczepanowski, R.H, Siksnys, V, Bochtler, M. | Deposit date: | 2009-08-10 | Release date: | 2010-08-11 | Last modified: | 2023-11-01 | Method: | X-RAY DIFFRACTION (1.89 Å) | Cite: | How BcnI and MvaI distinguish W from S To be Published
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2OAA
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![BU of 2oaa by Molmil](/molmil-images/mine/2oaa) | Restriction endonuclease MvaI-cognate DNA substrate complex | Descriptor: | 5'-D(*CP*AP*TP*CP*CP*AP*GP*GP*TP*AP*C)-3', 5'-D(*GP*GP*TP*AP*CP*CP*TP*GP*GP*AP*T)-3', CALCIUM ION, ... | Authors: | Kaus-Drobek, M, Czapinska, H, Sokolowska, M, Tamulaitis, G, Szczepanowski, R.H, Urbanke, K, Siksnys, V, Bochtler, M. | Deposit date: | 2006-12-15 | Release date: | 2007-02-20 | Last modified: | 2023-08-30 | Method: | X-RAY DIFFRACTION (1.5 Å) | Cite: | Restriction endonuclease MvaI is a monomer that recognizes its target sequence asymmetrically. Nucleic Acids Res., 35, 2007
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2J63
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![BU of 2j63 by Molmil](/molmil-images/mine/2j63) | Crystal structure of AP endonuclease LMAP from Leishmania major | Descriptor: | AP-ENDONUCLEASE | Authors: | Vidal, A.E, Harkiolaki, M, Gallego, C, Castillo-Acosta, V.M, Ruiz-Perez, L.M, Wilson, K.S, Gonzalez-Pacanowska, D. | Deposit date: | 2006-09-25 | Release date: | 2007-08-28 | Last modified: | 2023-12-13 | Method: | X-RAY DIFFRACTION (2.48 Å) | Cite: | Crystal Structure and DNA Repair Activities of the Ap Endonuclease from Leishmania Major. J.Mol.Biol., 373, 2007
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1LPQ
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![BU of 1lpq by Molmil](/molmil-images/mine/1lpq) | Human DNA Topoisomerase I (70 Kda) In Non-Covalent Complex With A 22 Base Pair DNA Duplex Containing an 8-oxoG Lesion | Descriptor: | 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*(8OG)P*GP*AP*AP*AP*AP*AP*TP*TP*TP*TP*T)-3', 5'-D(*AP*AP*AP*AP*AP*TP*TP*TP*TP*TP*CP*CP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3', DNA topoisomerase I | Authors: | Lesher, D.T, Pommier, Y, Stewart, L, Redinbo, M.R. | Deposit date: | 2002-05-08 | Release date: | 2002-08-16 | Last modified: | 2024-02-14 | Method: | X-RAY DIFFRACTION (3.14 Å) | Cite: | 8-Oxoguanine rearranges the active site of human topoisomerase I Proc.Natl.Acad.Sci.USA, 99, 2002
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4LIF
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![BU of 4lif by Molmil](/molmil-images/mine/4lif) | |
8AG3
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![BU of 8ag3 by Molmil](/molmil-images/mine/8ag3) | |
2VF7
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![BU of 2vf7 by Molmil](/molmil-images/mine/2vf7) | Crystal structure of UvrA2 from Deinococcus radiodurans | Descriptor: | ADENOSINE-5'-DIPHOSPHATE, EXCINUCLEASE ABC, SUBUNIT A., ... | Authors: | Timmins, J, Gordon, E, Caria, S, Leonard, G, Kuo, M.S, Monchois, V, McSweeney, S. | Deposit date: | 2007-10-31 | Release date: | 2008-12-16 | Last modified: | 2024-05-08 | Method: | X-RAY DIFFRACTION (2.3 Å) | Cite: | Structural and mutational analyses of Deinococcus radiodurans UvrA2 provide insight into DNA binding and damage recognition by UvrAs. Structure, 17, 2009
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3WPB
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![BU of 3wpb by Molmil](/molmil-images/mine/3wpb) | Crystal structure of horse TLR9 (unliganded form) | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, SULFATE ION, ... | Authors: | Ohto, U, Tanji, H, Shimizu, T. | Deposit date: | 2014-01-11 | Release date: | 2015-02-11 | Last modified: | 2020-07-29 | Method: | X-RAY DIFFRACTION (2.4 Å) | Cite: | Structural basis of CpG and inhibitory DNA recognition by Toll-like receptor 9 Nature, 520, 2015
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6KE1
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![BU of 6ke1 by Molmil](/molmil-images/mine/6ke1) | Crystal structure of TtCas1 | Descriptor: | CRISPR-associated endonuclease Cas1 2 | Authors: | Wang, Y.L, Li, J.Z, Yang, J, Wang, J.Y. | Deposit date: | 2019-07-03 | Release date: | 2019-12-18 | Last modified: | 2023-11-22 | Method: | X-RAY DIFFRACTION (3.39 Å) | Cite: | Crystal structure of Cas1 in complex with branched DNA. Sci China Life Sci, 63, 2020
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