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6VVF
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BU of 6vvf by Molmil
Scabin (Y129H) toxin from Streptomyces scabies
Descriptor: Scabin
Authors:Heney, K, Lyons, B, Merrill, A.R.
Deposit date:2020-02-17
Release date:2021-01-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from Streptomyces scabies .
Toxins, 13, 2021
8P26
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BU of 8p26 by Molmil
Crystal structure of Arabidopsis thaliana PAXX
Descriptor: U2 small nuclear ribonucleoprotein auxiliary factor-like protein
Authors:Ochi, T.
Deposit date:2023-05-15
Release date:2023-06-28
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.6 Å)
Cite:Plant PAXX has an XLF-like function and stimulates DNA end joining by the Ku-DNA ligase IV/XRCC4 complex.
Plant J., 116, 2023
6VV4
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BU of 6vv4 by Molmil
Scabin (V109G) toxin from Streptomyces scabies
Descriptor: Scabin
Authors:Heney, K, Lyons, B, Merrill, A.R.
Deposit date:2020-02-16
Release date:2021-01-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mapping the DNA-Binding Motif of Scabin Toxin, a Guanine Modifying Enzyme from Streptomyces scabies .
Toxins, 13, 2021
7DUT
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BU of 7dut by Molmil
Structure of Sulfolobus solfataricus SegA protein
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SOJ protein (Soj)
Authors:Yen, C.Y, Lin, M.G, Hsiao, C.D, Sun, Y.J.
Deposit date:2021-01-11
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly.
Nucleic Acids Res., 49, 2021
7DV3
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BU of 7dv3 by Molmil
Structure of Sulfolobus solfataricus SegA-AMPPNP protein
Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, SOJ protein (Soj)
Authors:Yen, C.Y, Lin, M.G, Wu, C.T, Hsiao, C.D, Sun, Y.J.
Deposit date:2021-01-12
Release date:2021-12-22
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Chromosome segregation in Archaea: SegA- and SegB-DNA complex structures provide insights into segrosome assembly.
Nucleic Acids Res., 49, 2021
6QVF
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BU of 6qvf by Molmil
TT_C0855 competence pilin from Thermus thermophilus HB27
Descriptor: Prepilin-like protein
Authors:Derrick, J.P, Salleh, M.Z, Levy, C.
Deposit date:2019-03-01
Release date:2019-05-29
Last modified:2019-08-21
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structure and Properties of a Natural Competence-Associated Pilin Suggest a Unique Pilus Tip-Associated DNA Receptor.
Mbio, 10, 2019
1C1K
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BU of 1c1k by Molmil
BACTERIOPHAGE T4 GENE 59 HELICASE ASSEMBLY PROTEIN
Descriptor: BPT4 GENE 59 HELICASE ASSEMBLY PROTEIN, CHLORIDE ION, IRIDIUM ION
Authors:Mueser, T.C, Jones, C.E, Nossal, N.G, Hyde, C.C.
Deposit date:1999-07-22
Release date:2000-02-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Bacteriophage T4 gene 59 helicase assembly protein binds replication fork DNA. The 1.45 A resolution crystal structure reveals a novel alpha-helical two-domain fold.
J.Mol.Biol., 296, 2000
3FZI
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BU of 3fzi by Molmil
1.9 Angstrom structure of the thermophilic exonuclease III homologue Mth0212
Descriptor: Exodeoxyribonuclease, MAGNESIUM ION
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-01-26
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
3G0A
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BU of 3g0a by Molmil
Mth0212 with two bound manganese ions
Descriptor: Exodeoxyribonuclease, GLYCEROL, MANGANESE (II) ION, ...
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-01-27
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
5CAJ
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BU of 5caj by Molmil
Crystal structure of E. coli YaaA, a member of the DUF328/UPF0246 family
Descriptor: BENZAMIDINE, CHLORIDE ION, UPF0246 protein YaaA
Authors:Prahlad, J, Lin, J, Wilson, M.A.
Deposit date:2015-06-29
Release date:2016-02-24
Last modified:2020-10-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The DUF328 family member YaaA is a DNA-binding protein with a novel fold.
J.Biol.Chem., 295, 2020
3G1K
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BU of 3g1k by Molmil
Mth0212 (WT) crystallized in a monoclinic space group
Descriptor: Exodeoxyribonuclease, MAGNESIUM ION
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-01-30
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
3G8V
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BU of 3g8v by Molmil
The rationally designed catalytically inactive mutant Mth0212(D151N)
Descriptor: Exodeoxyribonuclease, GLYCEROL, TETRAETHYLENE GLYCOL
Authors:Lakomek, K, Dickmanns, A, Ficner, R.
Deposit date:2009-02-12
Release date:2010-03-09
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal Structure Analysis of DNA Uridine Endonuclease Mth212 Bound to DNA
J.Mol.Biol., 399, 2010
4K1G
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BU of 4k1g by Molmil
Structure of E. coli Nfo(Endo IV)-H69A mutant bound to a cleaved DNA duplex containing a alphadA:T basepair
Descriptor: DI(HYDROXYETHYL)ETHER, DNA (5'-D(*CP*GP*TP*CP*GP*TP*CP*GP*TP*GP*GP*AP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*TP*CP*C)-3'), ...
Authors:Morera, S, Vigouroux, A.
Deposit date:2013-04-05
Release date:2013-07-31
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Insight into mechanisms of 3'-5' exonuclease activity and removal of bulky 8,5'-cyclopurine adducts by apurinic/apyrimidinic endonucleases.
Proc.Natl.Acad.Sci.USA, 110, 2013
7N3O
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BU of 7n3o by Molmil
Cryo-EM structure of the Cas12k-sgRNA complex
Descriptor: Cas12k, Single guide RNA
Authors:Chang, L, Li, Z, Xiao, R, Wang, S, Han, R.
Deposit date:2021-06-01
Release date:2021-09-01
Last modified:2024-05-29
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structural basis of target DNA recognition by CRISPR-Cas12k for RNA-guided DNA transposition.
Mol.Cell, 81, 2021
1EWN
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BU of 1ewn by Molmil
CRYSTAL STRUCTURE OF THE HUMAN AAG DNA REPAIR GLYCOSYLASE COMPLEXED WITH 1,N6-ETHENOADENINE-DNA
Descriptor: 3-METHYL-ADENINE DNA GLYCOSYLASE, DNA (5'-D(*GP*AP*CP*AP*TP*GP*(EDA)P*TP*TP*GP*CP*C)-3'), DNA (5'-D(P*GP*CP*AP*AP*TP*CP*AP*TP*GP*TP*CP*A)-3'), ...
Authors:Lau, A.Y, Wyatt, M.D, Glassner, B.J, Samson, L.D, Ellenberger, T.
Deposit date:2000-04-26
Release date:2000-12-11
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Molecular basis for discriminating between normal and damaged bases by the human alkyladenine glycosylase, AAG.
Proc.Natl.Acad.Sci.USA, 97, 2000
4P9F
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BU of 4p9f by Molmil
E. coli McbR/YncC
Descriptor: HTH-type transcriptional regulator mcbR
Authors:Lord, D.M, Page, R, Peti, W.
Deposit date:2014-04-03
Release date:2015-01-14
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:McbR/YncC: Implications for the Mechanism of Ligand and DNA Binding by a Bacterial GntR Transcriptional Regulator Involved in Biofilm Formation.
Biochemistry, 53, 2014
8IIE
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BU of 8iie by Molmil
Complex form of MsmUdgX and uracil- obtained from uracil DNA (ttUtt) post its cleavage by MsmUdgX
Descriptor: IRON/SULFUR CLUSTER, Type-4 uracil-DNA glycosylase, URACIL
Authors:Aroli, S.
Deposit date:2023-02-24
Release date:2023-06-21
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Mutational and structural analyses of UdgX: insights into the active site pocket architecture and its evolution.
Nucleic Acids Res., 51, 2023
2MBF
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BU of 2mbf by Molmil
Solution structure of the forkhead domain of Brugia malayi DAF-16a
Descriptor: Fork head domain containing protein
Authors:Veldkamp, C.T, Peterson, F.C, Casper, S.K, Schoeller, S.J.
Deposit date:2013-07-30
Release date:2013-09-11
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:The solution structure of the forkhead box-O DNA binding domain of Brugia malayi DAF-16a.
Proteins, 82, 2014
8Q7I
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BU of 8q7i by Molmil
PCNA from Chaetomium thermophilum in complex with Fen1 peptide
Descriptor: Flap endonuclease 1, Proliferating cell nuclear antigen, SODIUM ION
Authors:Alphey, M.S, Wolford, C.B, MacNeill, S.A.
Deposit date:2023-08-16
Release date:2023-12-13
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Canonical binding of Chaetomium thermophilum DNA polymerase delta / zeta subunit PolD3 and flap endonuclease Fen1 to PCNA.
Front Mol Biosci, 10, 2023
6PLN
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BU of 6pln by Molmil
X-ray crystal structure of Pyrococcus furiosus general transcription factor TFE-alpha
Descriptor: Transcription factor E
Authors:Murakami, K.S, Jun, S.H.
Deposit date:2019-07-01
Release date:2020-07-08
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase.
Nat Commun, 11, 2020
5A76
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BU of 5a76 by Molmil
KSHV LANA (ORF73) C-terminal domain, open non-ring conformation: orthorhombic crystal form
Descriptor: MAGNESIUM ION, ORF 73
Authors:Ponnusamy, R, Mcvey, C.E.
Deposit date:2015-07-02
Release date:2015-10-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:Kshv But not Mhv-68 Lana Induces a Strong Bend Upon Binding to Terminal Repeat Viral DNA.
Nucleic Acids Res., 43, 2015
4YRV
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BU of 4yrv by Molmil
Crystal structure of Anabaena transcription factor HetR complexed with 21-bp DNA from hetP promoter
Descriptor: CALCIUM ION, DNA (5'-D(P*AP*TP*GP*AP*GP*GP*GP*GP*TP*TP*AP*GP*AP*CP*CP*CP*CP*TP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*AP*GP*GP*GP*GP*TP*CP*TP*AP*AP*CP*CP*CP*CP*TP*CP*AP*T)-3'), ...
Authors:Hu, H.X, Jiang, Y.L, Zhao, M.X, Zhang, C.C, Chen, Y, Zhou, C.Z.
Deposit date:2015-03-16
Release date:2015-12-02
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into HetR-PatS interaction involved in cyanobacterial pattern formation
Sci Rep, 5, 2015
8KA5
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BU of 8ka5 by Molmil
Arabidopsis AP endonuclease ARP complex with 20bp THF-containing DNA
Descriptor: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE, DNA (43-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
Authors:Guo, W.T, Wu, B.X.
Deposit date:2023-08-02
Release date:2024-02-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structural insights into the catalytic mechanism of the AP endonuclease AtARP.
Structure, 32, 2024
8KA3
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BU of 8ka3 by Molmil
Arabidopsis AP endonuclease ARP complex with 22bp THF-containing DNA
Descriptor: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE, DNA (43-MER), DNA-(apurinic or apyrimidinic site) endonuclease, ...
Authors:Guo, W.T, Wu, B.X.
Deposit date:2023-08-02
Release date:2024-02-21
Last modified:2024-06-19
Method:X-RAY DIFFRACTION (3 Å)
Cite:Structural insights into the catalytic mechanism of the AP endonuclease AtARP.
Structure, 32, 2024
6W7L
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BU of 6w7l by Molmil
Structure of Tdp1 catalytic domain in complex with inhibitor XZ632p
Descriptor: 1,2-ETHANEDIOL, 4-[(2-phenylimidazo[1,2-a]pyrazin-3-yl)amino]benzene-1,2-dicarboxylic acid, Tyrosyl-DNA phosphodiesterase 1
Authors:Lountos, G.T, Zhao, X.Z, Kiselev, E, Tropea, J.E, Needle, D, Pommier, Y, Burke, T.R, Waugh, D.S.
Deposit date:2020-03-19
Release date:2021-03-24
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.856 Å)
Cite:Small molecule microarray identifies inhibitors of tyrosyl-DNA phosphodiesterase 1 that simultaneously access the catalytic pocket and two substrate binding sites
Chemical Science, 12, 2021

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數據於2024-09-04公開中

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