PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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4DCM	Crystal Structure of methyltransferase RlmG modifying G1835 of 23S rRNA in Escherichia coli Descriptor: DI(HYDROXYETHYL)ETHER, Ribosomal RNA large subunit methyltransferase G, S-ADENOSYLMETHIONINE Authors: Zhang, H, Gao, Z.Q, Dong, Y.H. Deposit date: 2012-01-17 Release date: 2012-08-01 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.297 Å) Cite: Structural insights into the function of 23S rRNA methyltransferase RlmG (m2G1835) from Escherichia coli. Rna, 18, 2012
2ATW	Structure of a Mycobacterium tuberculosis NusA-RNA complex Descriptor: Transcription elongation protein nusA, ribosomal RNA (5'- AGAACUCAAUAG -3') Authors: Beuth, B, Pennell, S, Arnvig, K.B, Martin, S.R, Taylor, I.A. Deposit date: 2005-08-26 Release date: 2005-10-11 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structure of a Mycobacterium tuberculosis NusA-RNA complex. Embo J., 24, 2005
4BKK	The Respiratory Syncytial Virus nucleoprotein-RNA complex forms a left-handed helical nucleocapsid. Descriptor: NUCLEOPROTEIN, RNA (161-MER) Authors: Bakker, S.E, Duquerroy, S, Galloux, M, Loney, C, Conner, E, Eleouet, J.F, Rey, F.A, Bhella, D. Deposit date: 2013-04-26 Release date: 2013-10-30 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY Cite: The Respiratory Syncytial Virus Nucleoprotein-RNA Complex Forms a Left-Handed Helical Nucleocapsid. J.Gen.Virol., 94, 2013
2EUY	Solution structure of the internal loop of human U65 H/ACA snoRNA 3' hairpin Descriptor: U65 box H/ACA snoRNA Authors: Feigon, J, Khanna, M, Wu, H, Johansson, C, Caizergues-Ferrer, M. Deposit date: 2005-10-30 Release date: 2006-01-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural study of the H/ACA snoRNP components Nop10p and the 3' hairpin of U65 snoRNA. Rna, 12, 2006
2ASB	Structure of a Mycobacterium tuberculosis NusA-RNA complex Descriptor: Transcription elongation protein nusA, ribosomal RNA (5'- GAACUCAAUAG -3') Authors: Beuth, B, Pennell, S, Arnvig, K.B, Martin, S.R, Taylor, I.A. Deposit date: 2005-08-23 Release date: 2005-10-11 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Structure of a Mycobacterium tuberculosis NusA-RNA complex. Embo J., 24, 2005
4J0X	Structure of Rrp9 Descriptor: Ribosomal RNA-processing protein 9 Authors: Zhang, L, Lin, J, Ye, K. Deposit date: 2013-01-31 Release date: 2013-06-05 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.502 Å) Cite: Structural and functional analysis of the U3 snoRNA binding protein Rrp9. Rna, 19, 2013
4J0W	Structure of U3-55K Descriptor: U3 small nucleolar RNA-interacting protein 2 Authors: Zhang, L, Lin, J, Ye, K. Deposit date: 2013-01-31 Release date: 2013-06-05 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structural and functional analysis of the U3 snoRNA binding protein Rrp9. Rna, 19, 2013
4HOQ	Crystal Structure of Full-Length Human IFIT5 Descriptor: Interferon-induced protein with tetratricopeptide repeats 5 Authors: Abbas, Y.M, Pichlmair, A, Gorna, M.W, Superti-Furga, G, Nagar, B. Deposit date: 2012-10-22 Release date: 2013-01-23 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (2.07 Å) Cite: Structural basis for viral 5'-PPP-RNA recognition by human IFIT proteins. Nature, 494, 2013
1NYB	SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX Descriptor: BoxB RNA, Probable regulatory protein N Authors: Cilley, C.D, Williamson, J.R. Deposit date: 2003-02-12 Release date: 2003-06-24 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural mimicry in the phage phi21 N peptide-boxB RNA complex RNA, 9, 2003
1E21	Ribonuclease 1 des1-7 Crystal Structure at 1.9A Descriptor: RIBONUCLEASE 1 Authors: Pous, J, Mallorqui-Fernandez, G, Peracaula, R, Terzyan, S.S, Futami, J, Tada, H, Yamada, H, Seno, M, De Llorens, R, Gomis-Ruth, F.X, Coll, M. Deposit date: 2000-05-15 Release date: 2001-05-03 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Three-Dimensional Crystal Structure of Human Rnase 1Dn7 at 1.9A Resolution Acta Crystallogr.,Sect.D, 57, 2001
2GTT	Crystal structure of the rabies virus nucleoprotein-RNA complex Descriptor: Nucleoprotein, PHOSPHATE ION, RNA (99-MER) Authors: Albertini, A.A.V, Wernimont, A.K, Muziol, T, Ravelli, R.B.G, Weissenhorn, W, Ruigrok, R.W.H. Deposit date: 2006-04-28 Release date: 2006-09-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.49 Å) Cite: Crystal Structure of the Rabies Virus Nucleoprotein-RNA Complex Science, 313, 2006
216D	CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*CP*IP*CP*IP*C)-3'), MAGNESIUM ION Authors: Chen, X, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-07-18 Release date: 1996-01-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.73 Å) Cite: Crystal structures of B-form DNA-RNA chimers complexed with distamycin. Nat.Struct.Biol., 2, 1995
217D	CRYSTAL STRUCTURES OF THE B-FORM DNA-RNA CHIMER (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3') COMPLEXED WITH DISTAMYCIN Descriptor: DISTAMYCIN A, DNA/RNA (5'-D(*IP*)-R(*CP*)-D(*IP*)-R(*CP*)-D(*IP*CP*IP*C)-3'), MAGNESIUM ION Authors: Chen, X, Ramakrishnan, B, Sundaralingam, M. Deposit date: 1995-07-18 Release date: 1996-01-29 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structures of B-form DNA-RNA chimers complexed with distamycin. Nat.Struct.Biol., 2, 1995
1D2R	2.9 A CRYSTAL STRUCTURE OF LIGAND-FREE TRYPTOPHANYL-TRNA SYNTHETASE: DOMAIN MOVEMENTS FRAGMENT THE ADENINE NUCLEOTIDE BINDING SITE. Descriptor: PROTEIN (TRYPTOPHANYL TRNA SYNTHETASE) Authors: Ilyin, V.A, Carter Jr, C.W. Deposit date: 1999-09-27 Release date: 2000-04-05 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: 2.9 A crystal structure of ligand-free tryptophanyl-tRNA synthetase: domain movements fragment the adenine nucleotide binding site. Protein Sci., 9, 2000
2G0C	Structure of the RNA binding domain (residues 404-479) of the Bacillus subtilis YxiN protein Descriptor: ATP-dependent RNA helicase dbpA, SULFATE ION Authors: McKay, D.B. Deposit date: 2006-02-11 Release date: 2006-04-18 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The domain of the Bacillus subtilis DEAD-box helicase YxiN that is responsible for specific binding of 23S rRNA has an RNA recognition motif fold. RNA, 12, 2006
1EMI	STRUCTURE OF 16S RRNA IN THE REGION AROUND RIBOSOMAL PROTEIN S8. Descriptor: 16S RIBOSOMAL RNA, RIBOSOMAL PROTEIN S8 Authors: Lancaster, L, Culver, G.M, Yusupova, G.Z, Cate, J.H, Yuspov, M.M, Noller, H.F. Deposit date: 2000-03-16 Release date: 2000-06-12 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (7.5 Å) Cite: The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography. RNA, 6, 2000
9DPL	Human LysRS bound to cellular modified tRNA-Lys3 and AIMP2 Descriptor: ADENOSINE MONOPHOSPHATE, Aminoacyl tRNA synthase complex-interacting multifunctional protein 2, LYSINE, ... Authors: Devarkar, S.C, Xiong, Y. Deposit date: 2024-09-22 Release date: 2025-03-12 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase. Nucleic Acids Res., 53, 2025
9DPA	Human LysRS bound to unmodified tRNA-Lys3 (3'-CCA Docked State, AMP bound) Descriptor: ADENOSINE MONOPHOSPHATE, LYSINE, Lysine--tRNA ligase, ... Authors: Devarkar, S.C, Xiong, Y. Deposit date: 2024-09-20 Release date: 2025-03-12 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase. Nucleic Acids Res., 53, 2025
9DOW	h-LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMP bound) Descriptor: ADENOSINE MONOPHOSPHATE, LYSINE, Lysine--tRNA ligase, ... Authors: Devarkar, S.C, Xiong, Y. Deposit date: 2024-09-19 Release date: 2025-03-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase. Nucleic Acids Res., 53, 2025
9DPB	Human LysRS bound to unmodified tRNA-Lys3 (Undocked State, AMPCPP bound) Descriptor: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER, LYSINE, Lysine--tRNA ligase, ... Authors: Devarkar, S.C, Xiong, Y. Deposit date: 2024-09-20 Release date: 2025-03-12 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Structural basis for aminoacylation of cellular modified tRNALys3 by human lysyl-tRNA synthetase. Nucleic Acids Res., 53, 2025
1D87	CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES Descriptor: DNA/RNA (5'-R(*GP*)-D(*CP*GP*TP*AP*TP*AP*CP*GP*C)-3') Authors: Egli, M, Usman, N, Rich, A. Deposit date: 1992-08-28 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 1993
1D88	CONFORMATIONAL INFLUENCE OF THE RIBOSE 2'-HYDROXYL GROUP: CRYSTAL STRUCTURES OF DNA-RNA CHIMERIC DUPLEXES Descriptor: DNA/RNA (5'-D(*GP*CP*GP*TP*)-R(*AP*)-D(*TP*AP*CP*GP*C)-3') Authors: Egli, M, Usman, N, Rich, A. Deposit date: 1992-08-28 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Conformational influence of the ribose 2'-hydroxyl group: crystal structures of DNA-RNA chimeric duplexes. Biochemistry, 32, 1993
2ZNJ	Crystal structure of Pyrrolysyl-tRNA synthetase from Desulfitobacterium hafniense Descriptor: Putative uncharacterized protein Authors: Nozawa, K, Araiso, Y, Soll, D, Ishitani, R, Nureki, O. Deposit date: 2008-04-25 Release date: 2008-12-30 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Pyrrolysyl-tRNA synthetase-tRNA(Pyl) structure reveals the molecular basis of orthogonality Nature, 457, 2009
2ZY6	Crystal structure of a truncated tRNA, TPHE39A Descriptor: CALCIUM ION, CHLORIDE ION, MAGNESIUM ION, ... Authors: Tanaka, I, Yao, M, Tanaka, Y, Kitago, Y, Ymagata, S. Deposit date: 2009-01-14 Release date: 2009-06-30 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Deduced RNA binding mechanism of ThiI based on structural and binding analyses of a minimal RNA ligand Rna, 15, 2009
8IE2	Crystal structure of Lactiplantibacillus plantarum GlyRS Descriptor: Glycine--tRNA ligase alpha subunit, Glycine--tRNA ligase beta subunit Authors: Yamashita, S, Tomita, K. Deposit date: 2023-02-15 Release date: 2023-06-07 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Mechanism of tRNA recognition by heterotetrameric glycyl-tRNA synthetase from lactic acid bacteria. J.Biochem., 174, 2023

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