Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8IEO
DownloadVisualize
BU of 8ieo by Molmil
Cryo-EM structure of ATP13A2 in the nominal E1P state
Descriptor: MAGNESIUM ION, Polyamine-transporting ATPase 13A2, SPERMINE, ...
Authors:Liu, Z.M, Mu, J.Q, Xue, C.Y.
Deposit date:2023-02-15
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Conformational cycle of human polyamine transporter ATP13A2.
Nat Commun, 14, 2023
8I2S
DownloadVisualize
BU of 8i2s by Molmil
Crystal structure of AtHPPD-Y18979 complex
Descriptor: 1,5-dimethyl-3-(naphthalen-2-ylmethyl)-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-15
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.592 Å)
Cite:Crystal structure of AtHPPD-Y18979 complex
To Be Published
8HYM
DownloadVisualize
BU of 8hym by Molmil
Crystal structure of AtHPPD-Y18030 complex
Descriptor: 3-cyclopentyl-1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-07
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.794 Å)
Cite:Crystal structure of AtHPPD-Y18030 complex
To Be Published
8I15
DownloadVisualize
BU of 8i15 by Molmil
Crystal structure of AtHPPD-YH20335 complex
Descriptor: 1,4-dimethyl-5-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-(phenylmethyl)benzimidazol-2-one, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-12
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.19 Å)
Cite:Crystal structure of AtHPPD-YH20335 complex
To Be Published
2RQE
DownloadVisualize
BU of 2rqe by Molmil
Solution structure of the silkworm bGRP/GNBP3 N-terminal domain reveals the mechanism for b-1,3-glucan specific recognition
Descriptor: Beta-1,3-glucan-binding protein
Authors:Takahasi, K, Ochiai, M, Horiuchi, M, Kumeta, H, Ogura, K, Ashida, M, Inagaki, F.
Deposit date:2009-04-22
Release date:2009-06-23
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the silkworm betaGRP/GNBP3 N-terminal domain reveals the mechanism for beta-1,3-glucan-specific recognition.
Proc.Natl.Acad.Sci.USA, 106, 2009
8I2U
DownloadVisualize
BU of 8i2u by Molmil
Crystal structure of AtHPPD-YH20282 complex
Descriptor: 2-[2-chloranyl-4-methylsulfonyl-3-(2-trimethylsilylethoxy)phenyl]carbonyl-3-oxidanyl-cyclohex-2-en-1-one, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-15
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.989 Å)
Cite:Crystal structure of AtHPPD-YH20282 complex
To Be Published
8IEL
DownloadVisualize
BU of 8iel by Molmil
Cryo-EM structure of ATP13A2 in the E1-like state
Descriptor: Polyamine-transporting ATPase 13A2
Authors:Liu, Z.M, Mu, J.Q, Xue, C.Y.
Deposit date:2023-02-15
Release date:2023-12-20
Method:ELECTRON MICROSCOPY (5.65 Å)
Cite:Conformational cycle of human polyamine transporter ATP13A2.
Nat Commun, 14, 2023
8IB8
DownloadVisualize
BU of 8ib8 by Molmil
Human TRiC-PhLP2A-actin complex in the closed state
Descriptor: ACTB protein (Fragment), Phosducin-like protein 3, T-complex protein 1 subunit alpha, ...
Authors:Roh, S.H, Park, J, Kim, H, Lim, S.
Deposit date:2023-02-09
Release date:2023-12-20
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (4.42 Å)
Cite:A structural vista of phosducin-like PhLP2A-chaperonin TRiC cooperation during the ATP-driven folding cycle.
Nat Commun, 15, 2024
4UY5
DownloadVisualize
BU of 4uy5 by Molmil
Crystal structure of Histidine-specific methyltransferase EgtD from Mycobacterium smegmatis
Descriptor: ACETATE ION, HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD, IMIDAZOLE
Authors:Jeong, J.H, Kim, Y.G.
Deposit date:2014-08-29
Release date:2014-10-08
Last modified:2017-07-12
Method:X-RAY DIFFRACTION (1.997 Å)
Cite:Structural Insights Into the Histidine Trimethylation Activity of Egtd from Mycobacterium Smegmatis.
Biochem.Biophys.Res.Commun., 452, 2014
8HX2
DownloadVisualize
BU of 8hx2 by Molmil
Crystal structure of AtHPPD-Y18405 complex
Descriptor: 3-[2-(3-chlorophenyl)ethyl]-1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexa-1,3-dien-1-yl)carbonyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-03
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Crystal structure of AtHPPD-Y18405 complex
To Be Published
8HZ9
DownloadVisualize
BU of 8hz9 by Molmil
Crystal structure of AtHPPD-Y181136 complex
Descriptor: 4-hydroxyphenylpyruvate dioxygenase, 5-methyl-6-[(2-methyl-3-oxidanylidene-1H-pyrazol-4-yl)carbonyl]-3-propan-2-yl-1,2,3-benzotriazin-4-one, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-08
Release date:2023-12-20
Method:X-RAY DIFFRACTION (2.011 Å)
Cite:Crystal structure of AtHPPD-Y181136 complex
To Be Published
2RS2
DownloadVisualize
BU of 2rs2 by Molmil
1H, 13C, and 15N Chemical Shift Assignments for Musashi1 RBD1:r(GUAGU) complex
Descriptor: RNA (5'-R(*GP*UP*AP*GP*U)-3'), RNA-binding protein Musashi homolog 1
Authors:Ohyama, T, Nagata, T, Tsuda, K, Imai, T, Okano, H, Yamazaki, T, Katahira, M.
Deposit date:2011-06-27
Release date:2011-12-28
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:Structure of Musashi1 in a complex with target RNA: the role of aromatic stacking interactions
Nucleic Acids Res., 2011
4PGB
DownloadVisualize
BU of 4pgb by Molmil
MHC Class I in complex with modified Sendai virus nucleoprotein peptide FAPGNWPAL
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-B alpha chain, ...
Authors:Celie, P.H.N, Joosten, R.P, Perrakis, A, Neefjes, J.
Deposit date:2014-05-01
Release date:2015-01-07
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The first step of peptide selection in antigen presentation by MHC class I molecules.
Proc.Natl.Acad.Sci.USA, 112, 2015
8HZ6
DownloadVisualize
BU of 8hz6 by Molmil
Crystal structure of AtHPPD-QRY2089 complex
Descriptor: 1,5-dimethyl-6-(2-oxidanyl-6-oxidanylidene-cyclohexen-1-yl)carbonyl-3-prop-2-ynyl-quinazoline-2,4-dione, 4-hydroxyphenylpyruvate dioxygenase, COBALT (II) ION
Authors:Dong, J, Lin, H.-Y, Yang, G.-F.
Deposit date:2023-01-08
Release date:2023-12-20
Method:X-RAY DIFFRACTION (1.605 Å)
Cite:Crystal structure of AtHPPD-QRY2089 complex
To Be Published
4PGP
DownloadVisualize
BU of 4pgp by Molmil
CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM DESULFOVIBRIO ALASKENSIS G20 (Dde_0634, TARGET EFI-510120) WITH BOUND 3-INDOLE ACETIC ACID
Descriptor: 1,2-ETHANEDIOL, 1H-INDOL-3-YLACETIC ACID, Extracellular solute-binding protein, ...
Authors:Vetting, M.W, Al Obaidi, N.F, Morisco, L.L, Wasserman, S.R, Stead, M, Attonito, J.D, Scott Glenn, A, Chowdhury, S, Evans, B, Hillerich, B, Love, J, Seidel, R.D, Whalen, K.L, Gerlt, J.A, Almo, S.C, Enzyme Function Initiative (EFI)
Deposit date:2014-05-02
Release date:2014-06-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Experimental strategies for functional annotation and metabolism discovery: targeted screening of solute binding proteins and unbiased panning of metabolomes.
Biochemistry, 54, 2015
8IDU
DownloadVisualize
BU of 8idu by Molmil
Crystal structure of substrate bound-form dehydroquinate dehydratase from Corynebacterium glutamicum
Descriptor: 1,3,4-TRIHYDROXY-5-OXO-CYCLOHEXANECARBOXYLIC ACID, 3-dehydroquinate dehydratase, GLYCEROL, ...
Authors:Lee, C.H, Kim, S, Kim, K.-J.
Deposit date:2023-02-14
Release date:2023-12-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural and Biochemical Analysis of 3-Dehydroquinate Dehydratase from Corynebacterium glutamicum .
J Microbiol Biotechnol., 33, 2023
8IEK
DownloadVisualize
BU of 8iek by Molmil
Cryo-EM structure of ATP13A2 in the E1-ATP state
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Polyamine-transporting ATPase 13A2
Authors:Liu, Z.M, Mu, J.Q, Xue, C.Y.
Deposit date:2023-02-15
Release date:2023-12-27
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Conformational cycle of human polyamine transporter ATP13A2.
Nat Commun, 14, 2023
8IGI
DownloadVisualize
BU of 8igi by Molmil
Crystal structure of HP1526 (XthA)- a base excision DNA repair protein in Helicobacter pylori
Descriptor: 1,3-BUTANEDIOL, Exodeoxyribonuclease (LexA), MANGANESE (II) ION
Authors:Dinh, T.T, Dao, O, Lee, K.H.
Deposit date:2023-02-20
Release date:2023-12-27
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structure of the apurinic/apyrimidinic endonuclease XthA (HP1526 protein) from Helicobacter pylori.
Biochem.Biophys.Res.Commun., 663, 2023
2THF
DownloadVisualize
BU of 2thf by Molmil
STRUCTURE OF HUMAN ALPHA-THROMBIN Y225F MUTANT BOUND TO D-PHE-PRO-ARG-CHLOROMETHYLKETONE
Descriptor: D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide, SODIUM ION, THROMBIN HEAVY CHAIN, ...
Authors:Caccia, S, Futterer, K, Di Cera, E, Waksman, G.
Deposit date:1999-01-26
Release date:1999-03-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Unexpected crucial role of residue 225 in serine proteases.
Proc.Natl.Acad.Sci.USA, 96, 1999
2TMV
DownloadVisualize
BU of 2tmv by Molmil
VISUALIZATION OF PROTEIN-NUCLEIC ACID INTERACTIONS IN A VIRUS. REFINED STRUCTURE OF INTACT TOBACCO MOSAIC VIRUS AT 2.9 ANGSTROMS RESOLUTION BY X-RAY FIBER DIFFRACTION
Descriptor: CALCIUM ION, RNA (5'-R(P*GP*AP*A)-3'), TMV COAT PROTEIN
Authors:Stubbs, G, Pattanayek, R, Namba, K.
Deposit date:1988-09-15
Release date:1989-01-09
Last modified:2024-02-21
Method:FIBER DIFFRACTION (2.9 Å)
Cite:Visualization of protein-nucleic acid interactions in a virus. Refined structure of intact tobacco mosaic virus at 2.9 A resolution by X-ray fiber diffraction.
J.Mol.Biol., 208, 1989
8HWD
DownloadVisualize
BU of 8hwd by Molmil
Cryo-EM Structure of D5 ADP form
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Primase D5
Authors:Li, Y.N, Zhu, J, Guo, Y.Y, Yan, R.H.
Deposit date:2022-12-29
Release date:2024-01-10
Last modified:2024-01-31
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Structural insight into the assembly and working mechanism of helicase-primase D5 from Mpox virus.
Nat.Struct.Mol.Biol., 31, 2024
2TPK
DownloadVisualize
BU of 2tpk by Molmil
AN INVESTIGATION OF THE STRUCTURE OF THE PSEUDOKNOT WITHIN THE GENE 32 MESSENGER RNA OF BACTERIOPHAGE T2 USING HETERONUCLEAR NMR METHODS
Descriptor: RNA (MRNA PSEUDOKNOT)
Authors:Holland, J.A, Hansen, M.R, Du, Z, Hoffman, D.W.
Deposit date:1998-10-28
Release date:1998-11-04
Last modified:2023-12-27
Method:SOLUTION NMR
Cite:An examination of coaxial stacking of helical stems in a pseudoknot motif: the gene 32 messenger RNA pseudoknot of bacteriophage T2.
Rna, 5, 1999
8HYN
DownloadVisualize
BU of 8hyn by Molmil
Bacterial STING from Riemerella anatipestifer
Descriptor: CD-NTase-associated protein 12, TETRAETHYLENE GLYCOL
Authors:Wang, Y.-C, Yang, C.-S, Hou, M.-H, Chen, Y.
Deposit date:2023-01-07
Release date:2024-01-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.089 Å)
Cite:Structural insights into the regulation, ligand recognition, and oligomerization of bacterial STING.
Nat Commun, 14, 2023
8IDR
DownloadVisualize
BU of 8idr by Molmil
Crystal structure of apo-form of dehydroquinate dehydratase from Corynebacterium glutamicum
Descriptor: 3-dehydroquinate dehydratase, CITRATE ANION, TETRAETHYLENE GLYCOL
Authors:Lee, C.H, Kim, S, Kim, K.-J.
Deposit date:2023-02-14
Release date:2023-12-27
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Structural and Biochemical Analysis of 3-Dehydroquinate Dehydratase from Corynebacterium glutamicum .
J Microbiol Biotechnol., 33, 2023
4W82
DownloadVisualize
BU of 4w82 by Molmil
Enoyl-acyl carrier protein-reductase domain from human fatty acid synthase
Descriptor: CHLORIDE ION, Fatty acid synthase, MAGNESIUM ION, ...
Authors:Sippel, K.H, Vyas, N.K, Sankaran, B, Quiocho, F.A.
Deposit date:2014-08-22
Release date:2014-10-15
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the human Fatty Acid synthase enoyl-acyl carrier protein-reductase domain complexed with triclosan reveals allosteric protein-protein interface inhibition.
J.Biol.Chem., 289, 2014

222624

數據於2024-07-17公開中

PDB statisticsPDBj update infoContact PDBjnumon