Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

7MX4
DownloadVisualize
BU of 7mx4 by Molmil
CD1c with antigen analogue 1
Descriptor: (2S)-2,3-dihydroxypropyl hexadecanoate, (4S,8R,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl (1R,2S,3S,4R,5R)-2,3,4-trihydroxy-5-(hydroxymethyl)cyclohexyl hydrogen (R)-phosphate, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
Authors:Cao, T.P, Shahine, A, Rossjohn, J.
Deposit date:2021-05-18
Release date:2021-11-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
J.Biol.Chem., 297, 2021
7MXH
DownloadVisualize
BU of 7mxh by Molmil
CD1c with antigen analogue 3
Descriptor: (2S)-2,3-dihydroxypropyl hexadecanoate, 2,6-anhydro-1-deoxy-1,1-difluoro-1-[(R)-hydroxy{[(4S,8S,12S,16S,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-D-glycero-D-galacto-heptitol, 2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Cao, T.P, Shahine, A, Rossjohn, J.
Deposit date:2021-05-19
Release date:2021-11-17
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.11 Å)
Cite:Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
J.Biol.Chem., 297, 2021
7MXF
DownloadVisualize
BU of 7mxf by Molmil
CD1c with antigen analogue 2
Descriptor: (2S)-2,3-dihydroxypropyl hexadecanoate, 2,6-anhydro-1-deoxy-1-[(S)-hydroxy{[(4R,8S,12R,16R,20S)-4,8,12,16,20-pentamethylheptacosyl]oxy}phosphoryl]-D-glycero-D-galacto-heptitol, 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, ...
Authors:Cao, T.P, Shahine, A, Rossjohn, J.
Deposit date:2021-05-19
Release date:2021-11-17
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Rational design of a hydrolysis-resistant mycobacterial phosphoglycolipid antigen presented by CD1c to T cells.
J.Biol.Chem., 297, 2021
1NWX
DownloadVisualize
BU of 1nwx by Molmil
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH ABT-773
Descriptor: 23S RIBOSOMAL RNA, 5S RIBOSOMAL RNA, CETHROMYCIN, ...
Authors:Schluenzen, F, Harms, J, Franceschi, F, Hansen, H.A.S, Bartels, H, Zarivach, R, Yonath, A.
Deposit date:2003-02-07
Release date:2003-03-18
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural basis for the antibiotic activity of ketolides and azalides.
Structure, 11, 2003
2MV3
DownloadVisualize
BU of 2mv3 by Molmil
The N-domain of the AAA metalloproteinase Yme1 from Saccharomyces cerevisiae
Descriptor: Mitochondrial inner membrane i-AAA protease supercomplex subunit YME1
Authors:Scharfenberg, F, Serek-Heuberger, J, Martin, J, Lupas, A.N, Coles, M.
Deposit date:2014-09-22
Release date:2015-01-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Structure and Evolution of N-domains in AAA Metalloproteases.
J.Mol.Biol., 427, 2015
2XPY
DownloadVisualize
BU of 2xpy by Molmil
Structure of Native Leukotriene A4 Hydrolase from Saccharomyces cerevisiae
Descriptor: GLUTATHIONE, GLYCEROL, LEUKOTRIENE A-4 HYDROLASE, ...
Authors:Helgstrand, C, Hasan, M, Usyal, H, Haeggstrom, J.Z, Thunnissen, M.M.G.M.
Deposit date:2010-08-31
Release date:2010-12-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.73 Å)
Cite:A Leukotriene A(4) Hydrolase-Related Aminopeptidase from Yeast Undergoes Induced Fit Upon Inhibitor Binding.
J.Mol.Biol., 406, 2011
1ONO
DownloadVisualize
BU of 1ono by Molmil
IspC Mn2+ complex
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, MANGANESE (II) ION
Authors:Steinbacher, S, Kaiser, J, Eisenreich, W, Huber, R, Bacher, A, Rohdich, F.
Deposit date:2003-02-28
Release date:2003-03-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural basis of fosmidomycin action revealed by the complex with 2-C-methyl-D-erythritol 4-phosphate synthase (IspC). Implications for the catalytic mechanism and anti-malaria drug development.
J.BIOL.CHEM., 278, 2003
2WCG
DownloadVisualize
BU of 2wcg by Molmil
X-ray structure of acid-beta-glucosidase with N-octyl(cyclic guanidine)-nojirimycin in the active site
Descriptor: CHLORIDE ION, GLUCOSYLCERAMIDASE, N-[(3E,5R,6R,7S,8R,8AR)-5,6,7,8-TETRAHYDROXYHEXAHYDROIMIDAZO[1,5-A]PYRIDIN-3(2H)-YLIDENE]OCTAN-1-AMINIUM, ...
Authors:Brumshtein, B, Aguilar, M, Garcia-Moreno, M.I, Mellet, C.O, Garcia-Fernandez, J.M, Silman, I, Shaaltiel, Y, Aviezer, D, Sussman, J.L, Futerman, A.H.
Deposit date:2009-03-12
Release date:2009-11-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:6-Amino-6-Deoxy-5,6-Di-N-(N'-Octyliminomethylidene)Nojirimycin: Synthesis, Biological Evaluation, and Crystal Structure in Complex with Acid Beta-Glucosidase.
Chembiochem, 10, 2009
3WQQ
DownloadVisualize
BU of 3wqq by Molmil
Crystal structure of PfDXR complexed with inhibitor-3
Descriptor: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplast, CALCIUM ION, ...
Authors:Tanaka, N, Umeda, T.
Deposit date:2014-01-31
Release date:2014-11-26
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Binding Modes of Reverse Fosmidomycin Analogs toward the Antimalarial Target IspC.
J.Med.Chem., 57, 2014
7N2V
DownloadVisualize
BU of 7n2v by Molmil
Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)
Descriptor: 1,4-DIAMINOBUTANE, 16S rRNA, 23S rRNA, ...
Authors:Rundlet, E.J, Holm, M, Schacherl, M, Natchiar, K.S, Altman, R.B, Spahn, C.M.T, Myasnikov, A.G, Blanchard, S.C.
Deposit date:2021-05-29
Release date:2021-07-14
Last modified:2025-03-19
Method:ELECTRON MICROSCOPY (2.54 Å)
Cite:Structural basis of early translocation events on the ribosome.
Nature, 595, 2021
1RYW
DownloadVisualize
BU of 1ryw by Molmil
C115S MurA liganded with reaction products
Descriptor: GLYCEROL, PHOSPHATE ION, UDP-N-acetylglucosamine 1-carboxyvinyltransferase, ...
Authors:Eschenburg, S, Schonbrunn, E.
Deposit date:2003-12-22
Release date:2004-11-09
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Evidence That the Fosfomycin Target Cys115 in UDP-N-acetylglucosamine Enolpyruvyl Transferase (MurA) Is Essential for Product Release.
J.Biol.Chem., 280, 2005
4MFZ
DownloadVisualize
BU of 4mfz by Molmil
The crystal structure of acyltransferase in complex with decanoyl-CoA
Descriptor: Dbv8 protein, SODIUM ION, SULFATE ION, ...
Authors:Lyu, S.Y, Liu, Y.C, Chang, C.Y, Huang, C.J, Li, T.L.
Deposit date:2013-08-28
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Multiple complexes of long aliphatic N-acyltransferases lead to synthesis of 2,6-diacylated/2-acyl-substituted glycopeptide antibiotics, effectively killing vancomycin-resistant enterococcus
J.Am.Chem.Soc., 136, 2014
2BUE
DownloadVisualize
BU of 2bue by Molmil
Structure of AAC(6')-Ib in complex with Ribostamycin and Coenzyme A.
Descriptor: AAC(6')-IB, CALCIUM ION, COENZYME A, ...
Authors:Vetting, M.W, Park, C.H, Hedge, S.S, Hooper, D.C, Blanchard, J.S.
Deposit date:2008-03-20
Release date:2008-09-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Mechanistic and Structural Analysis of Aminoglycoside N-Acetyltransferase Aac(6')-Ib and its Bifunctional, Fluoroquinolone-Active Aac(6')-Ib-Cr Variant.
Biochemistry, 47, 2008
6IL7
DownloadVisualize
BU of 6il7 by Molmil
Structure of Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) C503A mutant
Descriptor: SULFATE ION, Thioredoxin reductase/glutathione-related protein
Authors:Toh, Y.K, Shin, J, Balakrishna, A.M, Eisenhaber, F, Eisenhaber, B, Gruber, G.
Deposit date:2018-10-17
Release date:2019-05-22
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Effect of the additional cysteine 503 of vancomycin-resistant Enterococcus faecalis (V583) alkylhydroperoxide reductase subunit F (AhpF) and the mechanism of AhpF and subunit C assembling.
Free Radic. Biol. Med., 138, 2019
7UMW
DownloadVisualize
BU of 7umw by Molmil
Crystal structure of E. Coli FabI in complex with NAD and Fabimycin ((S,E)-3-(7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl)-N-methyl-N-((3-methylbenzofuran-2-yl)methyl)acrylamide)
Descriptor: (2E)-3-[(7S)-7-amino-8-oxo-6,7,8,9-tetrahydro-5H-pyrido[2,3-b]azepin-3-yl]-N-methyl-N-[(3-methyl-1-benzofuran-2-yl)methyl]prop-2-enamide, Enoyl-[acyl-carrier-protein] reductase [NADH] FabI, NICOTINAMIDE-ADENINE-DINUCLEOTIDE
Authors:Hajian, B.
Deposit date:2022-04-08
Release date:2022-12-14
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:An Iterative Approach Guides Discovery of the FabI Inhibitor Fabimycin, a Late-Stage Antibiotic Candidate with In Vivo Efficacy against Drug-Resistant Gram-Negative Infections
Acs Cent.Sci., 8, 2022
4JI1
DownloadVisualize
BU of 4ji1 by Molmil
Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ...
Authors:Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T.
Deposit date:2013-03-05
Release date:2013-11-06
Last modified:2025-02-12
Method:X-RAY DIFFRACTION (3.144 Å)
Cite:The central role of protein S12 in organizing the structure of the decoding site of the ribosome.
Rna, 19, 2013
4Y59
DownloadVisualize
BU of 4y59 by Molmil
Crystal structure of ALiS1-Streptavidin complex
Descriptor: 2-[3-(trifluoromethyl)phenyl]furo[3,2-c]pyridin-4(5H)-one, Streptavidin
Authors:Sugiyama, S, Terai, T, Kohno, M, Ishida, H, Nagano, T.
Deposit date:2015-02-11
Release date:2015-09-23
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Artificial Ligands of Streptavidin (ALiS): Discovery, Characterization, and Application for Reversible Control of Intracellular Protein Transport
J.Am.Chem.Soc., 137, 2015
6QNH
DownloadVisualize
BU of 6qnh by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0ms timepoint
Descriptor: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-02-11
Release date:2019-10-02
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.849 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
1UJM
DownloadVisualize
BU of 1ujm by Molmil
Crystal structure of aldehyde reductase 2 from Sporobolomyces salmonicolor AKU4429
Descriptor: Aldehyde reductase II, SULFATE ION
Authors:Kamitori, S, Iguchi, A, Ohtaki, A, Kita, K.
Deposit date:2003-08-06
Release date:2004-10-12
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structure of aldehyde reductase 2 from Sporobolomyces salmonicolor AKU4429 at 2.0 A resolution
To be Published
6RNF
DownloadVisualize
BU of 6rnf by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 30 ms timepoint
Descriptor: MAGNESIUM ION, Xylose isomerase, alpha-D-glucopyranose
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-05-08
Release date:2019-10-02
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QND
DownloadVisualize
BU of 6qnd by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 60 s timepoint
Descriptor: COBALT (II) ION, D-glucose, MAGNESIUM ION, ...
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-02-11
Release date:2019-10-02
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QNI
DownloadVisualize
BU of 6qni by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 1.0 s timepoint
Descriptor: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-02-11
Release date:2019-10-02
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.846 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QNC
DownloadVisualize
BU of 6qnc by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 0.1 s timepoint
Descriptor: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-02-10
Release date:2019-10-02
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.897 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
6QNJ
DownloadVisualize
BU of 6qnj by Molmil
Liquid Application Method for time-resolved Analyses (LAMA) by serial synchrotron crystallography, Xylose Isomerase 4.5 s timepoint
Descriptor: COBALT (II) ION, MAGNESIUM ION, Xylose isomerase, ...
Authors:Mehrabi, P, Schulz, E.C, Miller, R.J.D.
Deposit date:2019-02-11
Release date:2019-10-02
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.851 Å)
Cite:Liquid application method for time-resolved analyses by serial synchrotron crystallography.
Nat.Methods, 16, 2019
7U0U
DownloadVisualize
BU of 7u0u by Molmil
Crystal Structure of a Aspergillus fumigatus Calcineurin A - Calcineurin B fusion bound to FKBP12 and FK-506
Descriptor: 8-DEETHYL-8-[BUT-3-ENYL]-ASCOMYCIN, CALCIUM ION, PHOSPHATE ION, ...
Authors:Fox III, D, Abendroth, J, DeBouver, N.D, Hoy, M.J, Heitman, J, Lorimer, D.D, Horanyi, P.S, Edwards, T.E, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2022-02-18
Release date:2022-08-03
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure-Guided Synthesis of FK506 and FK520 Analogs with Increased Selectivity Exhibit In Vivo Therapeutic Efficacy against Cryptococcus.
Mbio, 13, 2022

236060

數據於2025-05-14公開中

PDB statisticsPDBj update infoContact PDBjnumon