Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

1Y2Q
DownloadVisualize
BU of 1y2q by Molmil
Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi
Descriptor: Threonyl-tRNA synthetase
Authors:Dwivedi, S, Kruparani, S.P, Sankaranarayanan, R.
Deposit date:2004-11-23
Release date:2005-06-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:A D-amino acid editing module coupled to the translational apparatus in archaea
Nat.Struct.Mol.Biol., 12, 2005
4V6A
DownloadVisualize
BU of 4v6a by Molmil
Structure of EF-P bound to the 70S ribosome.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ...
Authors:Stanley, R.E, Blaha, G.
Deposit date:2009-06-15
Release date:2014-07-09
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Formation of the first peptide bond: the structure of EF-P bound to the 70S ribosome.
Science, 325, 2009
1Y34
DownloadVisualize
BU of 1y34 by Molmil
Crystal structure of the complex of subtilisin BPN' with chymotrypsin inhibitor 2 E60A mutant
Descriptor: CALCIUM ION, CITRIC ACID, POLYETHYLENE GLYCOL (N=34), ...
Authors:Radisky, E.S, Lu, C.J, Kwan, G, Koshland Jr, D.E.
Deposit date:2004-11-23
Release date:2005-05-17
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Role of the intramolecular hydrogen bond network in the inhibitory power of chymotrypsin inhibitor 2
Biochemistry, 44, 2005
1KJZ
DownloadVisualize
BU of 1kjz by Molmil
Structure of the large gamma subunit of initiation factor eIF2 from Pyrococcus abyssi-G235D mutant
Descriptor: ZINC ION, eIF2gamma
Authors:Schmitt, E, Blanquet, S, Mechulam, Y.
Deposit date:2001-12-06
Release date:2002-04-10
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:The large subunit of initiation factor aIF2 is a close structural homologue of elongation factors.
EMBO J., 21, 2002
1YBD
DownloadVisualize
BU of 1ybd by Molmil
Crystal structure analysis of uridylate kinase from Neisseria meningitidis
Descriptor: FORMIC ACID, GLYCEROL, Uridylate kinase
Authors:Kumaran, D, Swaminathan, S, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2004-12-20
Release date:2005-02-15
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal structure analysis of uridylate kinase from Neisseria meningitidis
To be Published
4BNC
DownloadVisualize
BU of 4bnc by Molmil
Crystal structure of the DNA-binding domain of human ETV1 complexed with DNA
Descriptor: 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3', 5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP)-3', HUMAN ETV1
Authors:Allerston, C.K, Cooper, C.D.O, Krojer, T, Chaikuad, A, Vollmar, M, Froese, D.S, Arrowsmith, C.H, Edwards, A, Bountra, C, von Delft, F, Gileadi, O.
Deposit date:2013-05-14
Release date:2013-07-03
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structures of the Ets Domains of Transcription Factors Etv1, Etv4, Etv5 and Fev: Determinants of DNA Binding and Redox Regulation by Disulfide Bond Formation.
J.Biol.Chem., 290, 2015
1YBK
DownloadVisualize
BU of 1ybk by Molmil
RHCC cocrystallized with CAPB
Descriptor: N-(CARBOXYMETHYL)-N,N-DIMETHYL-3-[(1-OXODODECYL)AMINO]-1-PROPANAMINIUM INNER SALT, SULFATE ION, tetrabrachion
Authors:Stetefeld, J.
Deposit date:2004-12-21
Release date:2005-01-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Favourable mediation of crystal contacts by cocoamidopropylbetaine (CAPB).
Acta Crystallogr.,Sect.D, 61, 2005
1YC6
DownloadVisualize
BU of 1yc6 by Molmil
Crystallographic Structure of the T=1 Particle of Brome Mosaic Virus
Descriptor: Coat protein
Authors:Larson, S.B, Lucas, R.W, McPherson, A.
Deposit date:2004-12-22
Release date:2005-01-18
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Crystallographic structure of the T=1 particle of brome mosaic virus.
J.Mol.Biol., 346, 2005
1YEI
DownloadVisualize
BU of 1yei by Molmil
CATALYTIC ANTIBODY D2.3 COMPLEX
Descriptor: PARA-NITROPHENYLPHOSPHONOBUTANOYL-GLYCINE, PROTEIN (IG ANTIBODY D2.3 (HEAVY CHAIN)), PROTEIN (IG ANTIBODY D2.3 (LIGHT CHAIN)), ...
Authors:Gigant, B, Knossow, M.
Deposit date:1998-08-13
Release date:1999-01-13
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crossreactivity, efficiency and catalytic specificity of an esterase-like antibody.
J.Mol.Biol., 284, 1998
1Y3K
DownloadVisualize
BU of 1y3k by Molmil
Solution structure of the apo form of the fifth domain of Menkes protein
Descriptor: Copper-transporting ATPase 1
Authors:Banci, L, Chasapis, C.T, Ciofi-Baffoni, S, Hadjiliadis, N, Rosato, A, Structural Proteomics in Europe (SPINE)
Deposit date:2004-11-25
Release date:2005-03-08
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:An NMR study of the interaction between the human copper(I) chaperone and the second and fifth metal-binding domains of the Menkes protein
Febs J., 272, 2005
1Y4K
DownloadVisualize
BU of 1y4k by Molmil
Lipoxygenase-1 (Soybean) at 100K, N694G Mutant
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, FE (II) ION, ...
Authors:Chruszcz, M, Segraves, E, Holman, T.R, Minor, W.
Deposit date:2004-12-01
Release date:2005-12-13
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Kinetic, spectroscopic, and structural investigations of the soybean lipoxygenase-1 first-coordination sphere mutant, Asn694Gly.
Biochemistry, 45, 2006
1KQ4
DownloadVisualize
BU of 1kq4 by Molmil
CRYSTAL STRUCTURE OF A THY1-COMPLEMENTING PROTEIN (TM0449) FROM THERMOTOGA MARITIMA AT 2.25 A RESOLUTION
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, HYPOTHETICAL PROTEIN TM0449
Authors:Wilson, I.A, Miller, M.D, Joint Center for Structural Genomics (JCSG)
Deposit date:2002-01-03
Release date:2002-02-27
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline
Proc.Natl.Acad.Sci.USA, 99, 2002
1Y5B
DownloadVisualize
BU of 1y5b by Molmil
Dianhydrosugar-based benzamidine, factor Xa specific inhibitor in complex with bovine trypsin mutant
Descriptor: 2,5-BIS-O-{4-[AMINO(IMINO)METHYL]PHENYL}-1,4:3,6-DIANHYDRO-D-GLUCITOL, CALCIUM ION, IMIDAZOLE, ...
Authors:Di Fenza, A, Heine, A, Klebe, G.
Deposit date:2004-12-02
Release date:2005-12-13
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Understanding binding selectivity toward trypsin and factor Xa: the role of aromatic interactions
Chemmedchem, 2, 2007
1YEQ
DownloadVisualize
BU of 1yeq by Molmil
T-To-T(High) quaternary transitions in human hemoglobin: betaW37Y OXY (10 test sets)
Descriptor: Hemoglobin alpha chain, Hemoglobin beta chain, OXYGEN MOLECULE, ...
Authors:Kavanaugh, J.S, Rogers, P.H, Arnone, A.
Deposit date:2004-12-28
Release date:2005-01-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.75 Å)
Cite:Crystallographic evidence for a new ensemble of ligand-induced allosteric transitions in hemoglobin: the T-to-T(high) quaternary transitions.
Biochemistry, 44, 2005
1YFF
DownloadVisualize
BU of 1yff by Molmil
STRUCTURE OF HUMAN CARBONMONOXYHEMOGLOBIN C (BETA E6K): TWO QUATERNARY STATES (R2 and R3) IN ONE CRYSTAL
Descriptor: CARBON MONOXIDE, Hemoglobin alpha chain, Hemoglobin beta chain, ...
Authors:Patskovska, L, Patskovsky, Y, Hirsch, R.E, Almo, S.C.
Deposit date:2004-12-31
Release date:2005-01-11
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Mechanism of Quaternary Transitions in Human Liganded Hemoglobin
To be Published
1YG2
DownloadVisualize
BU of 1yg2 by Molmil
Structure of the Vibrio cholerae virulence activator AphA
Descriptor: gene activator AphA
Authors:De Silva, R.S, Kovacikova, G, Lin, W, Taylor, R.T, Skorupski, K, Kull, F.J.
Deposit date:2005-01-04
Release date:2005-01-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal structure of the virulence gene activator AphA from Vibrio cholerae reveals it is a novel member of the winged helix transcription factor superfamily
J.Biol.Chem., 280, 2005
1Y5N
DownloadVisualize
BU of 1y5n by Molmil
The crystal structure of the NarGHI mutant NarI-K86A in complex with pentachlorophenol
Descriptor: (1S)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PENTANOYLOXY)METHYL]ETHYL OCTANOATE, 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE, FE3-S4 CLUSTER, ...
Authors:Bertero, M.G, Rothery, R.A, Boroumand, N, Palak, M, Blasco, F, Ginet, N, Weiner, J.H, Strynadka, N.C.J.
Deposit date:2004-12-02
Release date:2005-03-08
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Structural and Biochemical Characterization of a Quinol Binding Site of Escherichia coli Nitrate Reductase A
J.Biol.Chem., 280, 2005
1Y6U
DownloadVisualize
BU of 1y6u by Molmil
The Structure of the Excisionase (Xis) Protein from Conjugative Transposon Tn916 Provides Insights into the Regulation of Heterobivalent Tyrosine Recombinases
Descriptor: Excisionase from transposon Tn916
Authors:Abbani, M, Iwahara, M, Clubb, R.T.
Deposit date:2004-12-07
Release date:2005-03-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:The structure of the excisionase (xis) protein from conjugative transposon tn916 provides insights into the regulation of heterobivalent tyrosine recombinases
J.Mol.Biol., 347, 2005
1Y7H
DownloadVisualize
BU of 1y7h by Molmil
Structural and biochemical studies identify tobacco SABP2 as a methylsalicylate esterase and further implicate it in plant innate immunity, Northeast Structural Genomics Target AR2241
Descriptor: THIOCYANATE ION, salicylic acid-binding protein 2
Authors:Forouhar, F, Yang, Y, Kumar, D, Chen, Y, Fridman, E, Park, S.W, Chiang, Y, Acton, T.B, Montelione, G.T, Pichersky, E, Klessig, D.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2004-12-08
Release date:2004-12-28
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (2.52 Å)
Cite:Structural and biochemical studies identify tobacco SABP2 as a methyl salicylate esterase and implicate it in plant innate immunity
Proc.Natl.Acad.Sci.Usa, 102, 2005
1YGB
DownloadVisualize
BU of 1ygb by Molmil
Crystal Structure of the catalytic fragment of alanyl-tRNA synthetase in complex with L-serine
Descriptor: Alanyl-tRNA synthetase, SERINE
Authors:Swairjo, M.A, Schimmel, P.R.
Deposit date:2005-01-04
Release date:2005-01-25
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.48 Å)
Cite:Breaking sieve for steric exclusion of a noncognate amino acid from active site of a tRNA synthetase.
Proc.Natl.Acad.Sci.USA, 102, 2005
1Y8C
DownloadVisualize
BU of 1y8c by Molmil
Crystal structure of a S-adenosylmethionine-dependent methyltransferase from Clostridium acetobutylicum ATCC 824
Descriptor: S-adenosylmethionine-dependent methyltransferase, SULFATE ION
Authors:Rajashankar, K.R, Kniewel, R, Lee, K, Lima, C.D, Burley, S.K, New York SGX Research Center for Structural Genomics (NYSGXRC)
Deposit date:2004-12-11
Release date:2004-12-28
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structure of a S-adenosylmethionine-dependent methyltransferase from Clostridium acetobutylicum ATCC 824
To be Published
1Y8V
DownloadVisualize
BU of 1y8v by Molmil
Crystal structure of the A-DNA GCGTAT*CGC with a 2'-O-propyl Thymidine (T*)
Descriptor: 5'-D(*GP*CP*GP*TP*AP*(P2T)P*AP*CP*GP*C)-3'
Authors:Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharan, M.
Deposit date:2004-12-13
Release date:2005-06-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Probing the Influence of Stereoelectronic Effects on the Biophysical Properties of Oligonucleotides: Comprehensive Analysis of the RNA Affinity, Nuclease Resistance, and Crystal Structure of Ten 2'-O-Ribonucleic Acid Modifications.
Biochemistry, 44, 2005
1KPR
DownloadVisualize
BU of 1kpr by Molmil
The human non-classical major histocompatibility complex molecule HLA-E
Descriptor: BETA-2-MICROGLOBULIN, HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, ALPHA CHAIN, ...
Authors:Holmes, M.A, Strong, R.K.
Deposit date:2002-01-02
Release date:2003-02-25
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:HLA-E allelic variants: Correlating differential expression, peptide affinities, crystal structures and thermal stabilities
J.Biol.Chem., 278, 2003
1Y8Y
DownloadVisualize
BU of 1y8y by Molmil
Crystal structure of human CDK2 complexed with a pyrazolo[1,5-a]pyrimidine inhibitor
Descriptor: (5-CHLOROPYRAZOLO[1,5-A]PYRIMIDIN-7-YL)-(4-METHANESULFONYLPHENYL)AMINE, Cell division protein kinase 2
Authors:Williamson, D.S, Parratt, M.J, Torrance, C.J, Bower, J.F, Moore, J.D, Richardson, C.M, Dokurno, P, Cansfield, A.D, Francis, G.L, Hebdon, R.J, Howes, R, Jackson, P.S, Lockie, A.M, Murray, J.B, Nunns, C.L, Powles, J, Robertson, A, Surgenor, A.E.
Deposit date:2004-12-14
Release date:2005-02-08
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.996 Å)
Cite:Structure-guided design of pyrazolo[1,5-a]pyrimidines as inhibitors of human cyclin-dependent kinase 2.
Bioorg.Med.Chem.Lett., 15, 2005
1YGO
DownloadVisualize
BU of 1ygo by Molmil
Solution Structure of the pelle Death Domain
Descriptor: Probable serine/threonine-protein kinase pelle
Authors:Moncrieffe, M.C, Stott, K.M, Gay, N.J.
Deposit date:2005-01-05
Release date:2005-07-26
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure of the isolated Pelle death domain.
Febs Lett., 579, 2005

245663

數據於2025-12-03公開中

PDB statisticsPDBj update infoContact PDBjnumon