PDB: 59042 resultsInfo pagesStatus searchChemie searchBIRD

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8OSI	Genetically encoded green ratiometric calcium indicator FNCaMP in calcium-bound state Descriptor: CALCIUM ION, mNeonGreen,Calmodulin,Contig An16c0100, genomic contig Authors: Varfolomeeva, L.A, Boyko, K.M, Nikolaeva, A.Y, Subach, O.M, Subach, F.V. Deposit date: 2023-04-19 Release date: 2023-05-24 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (2.42 Å) Cite: FNCaMP, ratiometric green calcium indicator based on mNeonGreen protein. Biochem.Biophys.Res.Commun., 665, 2023
7AZ5	DNA polymerase sliding clamp from Escherichia coli with peptide 47 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, Peptide 47, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZG	DNA polymerase sliding clamp from Escherichia coli with peptide 4 bound Descriptor: Beta sliding clamp, Peptide 4 Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.92 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZL	DNA polymerase sliding clamp from Escherichia coli with peptide 38 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-07-10 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZ7	DNA polymerase sliding clamp from Escherichia coli with peptide 37 bound Descriptor: Beta sliding clamp, FORMIC ACID, PENTAETHYLENE GLYCOL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZ6	DNA polymerase sliding clamp from Escherichia coli with peptide 36 bound Descriptor: ACETATE ION, Beta sliding clamp, CHLORIDE ION, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZ8	DNA polymerase sliding clamp from Escherichia coli with peptide 43 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.61 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZD	DNA polymerase sliding clamp from Escherichia coli with peptide 20 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, PENTAETHYLENE GLYCOL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZE	DNA polymerase sliding clamp from Escherichia coli with peptide 18 bound Descriptor: Beta sliding clamp, GLYCEROL, MALONATE ION, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZC	DNA polymerase sliding clamp from Escherichia coli with peptide 22 bound Descriptor: Beta sliding clamp, GLYCEROL, Peptide 22 Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZF	DNA polymerase sliding clamp from Escherichia coli with peptide 8 bound Descriptor: Beta sliding clamp, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.93 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
7AZK	DNA polymerase sliding clamp from Escherichia coli with peptide 35 bound Descriptor: Beta sliding clamp, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Monsarrat, C, Compain, G, Andre, C, Martiel, I, Engilberge, S, Olieric, V, Wolff, P, Brillet, K, Landolfo, M, Silva da Veiga, C, Wagner, J, Guichard, G, Burnouf, D.Y. Deposit date: 2020-11-16 Release date: 2021-12-01 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Iterative Structure-Based Optimization of Short Peptides Targeting the Bacterial Sliding Clamp. J.Med.Chem., 64, 2021
1B77	BUILDING A REPLISOME STRUCTURE FROM INTERACTING PIECES: A SLIDING CLAMP COMPLEXED WITH AN INTERACTION PEPTIDE FROM DNA POLYMERASE Descriptor: PROTEIN (SLIDING CLAMP) Authors: Shamoo, Y, Steitz, T.A. Deposit date: 1999-01-27 Release date: 1999-02-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Building a replisome from interacting pieces: sliding clamp complexed to a peptide from DNA polymerase and a polymerase editing complex. Cell(Cambridge,Mass.), 99, 1999
6E8D	Crystal structure of the Bacillus subtilis sliding clamp-MutL complex. Descriptor: Beta sliding clamp,DNA mismatch repair protein MutL, GLYCEROL Authors: Guarne, A, Almawi, A.W. Deposit date: 2018-07-28 Release date: 2019-05-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.34 Å) Cite: Binding of the regulatory domain of MutL to the sliding beta-clamp is species specific. Nucleic Acids Res., 47, 2019
2P2A	X-ray structure of the GluR2 ligand binding core (S1S2J) in complex with 2-Bn-tet-AMPA at 2.26A resolution Descriptor: 2-AMINO-3-[3-HYDROXY-5-(2-BENZYL-2H-5-TETRAZOLYL)-4-ISOXAZOLYL]-PROPIONIC ACID, GLUTAMIC ACID, Glutamate receptor 2, ... Authors: Frydenvang, K, Kastrup, J.S, Gajhede, M. Deposit date: 2007-03-07 Release date: 2007-06-19 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.26 Å) Cite: A tetrazolyl-substituted subtype-selective AMPA receptor agonist. J.Med.Chem., 50, 2007
1LGN	DECAMERIC DAMP COMPLEX OF HUMAN SERUM AMYLOID P COMPONENT Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, CALCIUM ION, SERUM AMYLOID P COMPONENT Authors: Hohenester, E, Pepys, M.B, Wood, S.P. Deposit date: 1996-12-04 Release date: 1997-12-24 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structure of a decameric complex of human serum amyloid P component with bound dAMP. J.Mol.Biol., 269, 1997
4IK1	High resolution structure of GCaMPJ at pH 8.5 Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-02-05 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
4IK3	High resolution structure of GCaMP3 at pH 8.5 Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-01-29 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.007 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
4IK9	High resolution structure of GCaMP3 dimer form 2 at pH 7.5 Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, RCaMP, ... Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-01-29 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
4IK8	High resolution structure of GCaMP3 dimer form 1 at pH 7.5 Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-02-05 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
4IK4	High resolution structure of GCaMP3 at pH 5.0 Descriptor: CALCIUM ION, RCaMP, Green fluorescent protein Authors: Chen, Y, Song, X, Miao, L, Zhu, Y, Ji, G. Deposit date: 2012-12-25 Release date: 2014-02-05 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Structural insight into enhanced calcium indicator GCaMP3 and GCaMPJ to promote further improvement. Protein Cell, 4, 2013
3H50	CRYSTAL STRUCTURE OF A TETRACENOMYCIN POLYKETIDE SYNTHESIS PROTEIN (TCMJ) FROM XANTHOMONAS CAMPESTRIS PV. CAMPESTRIS AT 1.60 A RESOLUTION Descriptor: ACETATE ION, Tetracenomycin polyketide synthesis protein, ZINC ION Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2009-04-21 Release date: 2009-05-05 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Conformational changes associated with the binding of zinc acetate at the putative active site of XcTcmJ, a cupin from Xanthomonas campestris pv. campestris. Acta Crystallogr.,Sect.F, 66, 2010
3GKK	Insights into the Alkyl Peroxide Reduction Activity of Xanthomonas campestris Bacterioferritin Comigratory Protein from the Trapped Intermediate/Ligand Complex Structures Descriptor: Bacterioferritin comigratory protein, SULFATE ION Authors: Liao, S.-J. Deposit date: 2009-03-11 Release date: 2009-06-16 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Insights into the alkyl peroxide reduction pathway of Xanthomonas campestris bacterioferritin comigratory protein from the trapped intermediate-ligand complex structures J.Mol.Biol., 390, 2009
3GTC	AmpC beta-lactamase in complex with Fragment-based Inhibitor Descriptor: (1R,2S)-2-(5-thioxo-4,5-dihydro-1H-1,2,4-triazol-3-yl)cyclohexanecarboxylic acid, Beta-lactamase, PHOSPHATE ION Authors: Teotico, D.T, Shoichet, B.K. Deposit date: 2009-03-27 Release date: 2009-04-14 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Docking for fragment inhibitors of AmpC beta-lactamase Proc.Natl.Acad.Sci.USA, 106, 2009
9DHL	X-ray crystal structure of AmpC beta-lactamase with inhibitor Descriptor: AmpC Beta-lactamase, N-(1-acetyl-2,3-dihydro-1H-indol-4-yl)-3-chloro-2-hydroxybenzene-1-sulfonamide Authors: Liu, F, Shoichet, B.K. Deposit date: 2024-09-04 Release date: 2024-10-23 Last modified: 2025-07-09 Method: X-RAY DIFFRACTION (1.88 Å) Cite: The impact of library size and scale of testing on virtual screening. Nat.Chem.Biol., 21, 2025

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