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3GF8
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BU of 3gf8 by Molmil
Crystal structure of putative polysaccharide binding proteins (DUF1812) (NP_809975.1) from BACTEROIDES THETAIOTAOMICRON VPI-5482 at 2.20 A resolution
Descriptor: 1,2-ETHANEDIOL, putative polysaccharide binding proteins (DUF1812)
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2009-02-26
Release date:2009-03-24
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:A conserved fold for fimbrial components revealed by the crystal structure of a putative fimbrial assembly protein (BT1062) from Bacteroides thetaiotaomicron at 2.2 A resolution
Acta Crystallogr.,Sect.F, 66, 2010
6UTU
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BU of 6utu by Molmil
Crystal structure of minor pseudopilin ternary complex of XcpVWX from the Type 2 secretion system of Pseudomonas aeruginosa in the P3 space group
Descriptor: CALCIUM ION, Type II secretion system protein I, Type II secretion system protein J, ...
Authors:Zhang, Y, Wang, S, Jia, Z.
Deposit date:2019-10-30
Release date:2020-09-02
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:In Situ Proteolysis Condition-Induced Crystallization of the XcpVWX Complex in Different Lattices.
Int J Mol Sci, 21, 2020
6LCJ
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BU of 6lcj by Molmil
TtGalA, alpha-galactosidase from Thermus thermopilus in apo form
Descriptor: Alpha-galactosidase
Authors:Chen, S.C, Hsu, C.H.
Deposit date:2019-11-19
Release date:2020-07-01
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal Structure of alpha-Galactosidase fromThermus thermophilus: Insight into Hexamer Assembly and Substrate Specificity.
J.Agric.Food Chem., 68, 2020
3QDH
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BU of 3qdh by Molmil
Crystal structure of Actinomyces fimbrial adhesin FimA
Descriptor: Fimbrial structural subunit, ZINC ION
Authors:Devarajan, B, Krishnan, V, Narayana, S.V.L.
Deposit date:2011-01-18
Release date:2011-08-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Two autonomous structural modules in the fimbrial shaft adhesin FimA mediate Actinomyces interactions with streptococci and host cells during oral biofilm development.
Mol.Microbiol., 81, 2011
5OWE
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BU of 5owe by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1010
Descriptor: 1,3-bis(oxidanyl)benzo[c]chromen-6-one, NITRATE ION, Peregrin
Authors:Zhu, J, Spiliotopoulos, D, Caflisch, A.
Deposit date:2017-08-31
Release date:2018-10-10
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1010
To Be Published
5OWK
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BU of 5owk by Molmil
Crystal structure of CREBBP bromodomain complexed with DSPB2A002
Descriptor: CREB-binding protein, ethyl 4-chloranyl-1-methyl-6-oxidanylidene-pyridine-3-carboxylate
Authors:Zhu, J, Spiliotopoulos, D, Caflisch, A.
Deposit date:2017-09-01
Release date:2018-08-29
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Binding Motifs in the CBP Bromodomain: An Analysis of 20 Crystal Structures of Complexes with Small Molecules.
ACS Med Chem Lett, 9, 2018
4M99
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BU of 4m99 by Molmil
Acetyltransferase domain of PglB from Neisseria gonorrhoeae FA1090 in complex with acetyl coenzyme A
Descriptor: ACETYL COENZYME *A, Pilin glycosylation protein, SODIUM ION
Authors:Morrison, M.J, Imperiali, B.
Deposit date:2013-08-14
Release date:2013-10-02
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Biochemical analysis and structure determination of bacterial acetyltransferases responsible for the biosynthesis of UDP-N,N'-diacetylbacillosamine.
J.Biol.Chem., 288, 2013
5OWB
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BU of 5owb by Molmil
Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1004
Descriptor: 4-methyl-6-oxidanyl-1-benzofuran-3-one, NITRATE ION, Peregrin
Authors:Zhu, J, Spiliotopoulos, D, Caflisch, A.
Deposit date:2017-08-31
Release date:2018-07-18
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal structure of the human BRPF1 bromodomain in complex with DSPBP1004
To Be Published
8CO1
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BU of 8co1 by Molmil
Type II Secretion System
Descriptor: IPT/TIG domain-containing protein, Lipoprotein, Probable type IV piliation system protein DR_0774
Authors:Farci, D, Piano, D.
Deposit date:2023-02-26
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (2.56 Å)
Cite:Structural characterization and functional insights into the type II secretion system of the poly-extremophile Deinococcus radiodurans.
J.Biol.Chem., 300, 2024
5E73
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BU of 5e73 by Molmil
Crystal Structure of BAZ2B bromodomain in complex with acetylindole compound UZH47
Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, N-(1-acetyl-1H-indol-3-yl)-N-(5-hydroxy-2-methylphenyl)acetamide
Authors:Lolli, G, Spiliotopoulos, D, Unzue, A, Nevado, C, Caflisch, A.
Deposit date:2015-10-11
Release date:2015-10-28
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.71 Å)
Cite:The "Gatekeeper" Residue Influences the Mode of Binding of Acetyl Indoles to Bromodomains.
J. Med. Chem., 59, 2016
5E74
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BU of 5e74 by Molmil
Crystal Structure of BAZ2B bromodomain in complex with acetylindole compound UZH50
Descriptor: Bromodomain adjacent to zinc finger domain protein 2B, N-(1-acetyl-1H-indol-3-yl)-N-(5-hydroxy-2-methylphenyl)-3-(trifluoromethyl)benzamide
Authors:Lolli, G, Spiliotopoulos, D, Dolbois, A, Nevado, C, Caflisch, A.
Deposit date:2015-10-11
Release date:2015-10-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.783 Å)
Cite:The "Gatekeeper" Residue Influences the Mode of Binding of Acetyl Indoles to Bromodomains.
J. Med. Chem., 59, 2016
2E6K
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BU of 2e6k by Molmil
X-ray structure of Thermus thermopilus HB8 TT0505
Descriptor: Transketolase
Authors:Yoshida, H, Kamitori, S, Agari, Y, Iino, H, Kanagawa, M, Nakagawa, N, Ebihara, A, Kuramitsu, S, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-12-27
Release date:2007-11-13
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.09 Å)
Cite:X-ray structure of Thermus thermophilus HB8 TT0505
To be Published
1QHD
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BU of 1qhd by Molmil
CRYSTAL STRUCTURE OF VP6, THE MAJOR CAPSID PROTEIN OF GROUP A ROTAVIRUS
Descriptor: CALCIUM ION, CHLORIDE ION, VIRAL CAPSID VP6, ...
Authors:Mathieu, M, Petitpas, I, Rey, F.A.
Deposit date:1999-04-29
Release date:2001-04-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion.
EMBO J., 20, 2001
7PNB
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BU of 7pnb by Molmil
Sulfolobus acidocaldarius 0406 filament.
Descriptor: 6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Sulfolobus acidocaldarius 0406 filament., beta-D-glucopyranose-(1-4)-6-deoxy-6-sulfo-beta-D-glucopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
Authors:Isupov, M.N, Gaines, M, Daum, B.
Deposit date:2021-09-06
Release date:2022-09-14
Last modified:2023-03-29
Method:ELECTRON MICROSCOPY (3.46 Å)
Cite:Electron cryo-microscopy reveals the structure of the archaeal thread filament.
Nat Commun, 13, 2022
7D6P
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BU of 7d6p by Molmil
X-ray structure of the intermolecular complex of Clostridium perfringens sortase C with the C-terminal cell wall sorting signal motif.
Descriptor: GLYCEROL, SULFATE ION, Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
7D6T
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BU of 7d6t by Molmil
X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif.
Descriptor: Sortase family protein
Authors:Kamitori, S, Tamai, E.
Deposit date:2020-10-01
Release date:2021-06-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:X-ray structures of Clostridium perfringens sortase C with C-terminal cell wall sorting motif of LPST demonstrate role of subsite for substrate-binding and structural variations of catalytic site.
Biochem.Biophys.Res.Commun., 554, 2021
5NWP
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BU of 5nwp by Molmil
Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD
Descriptor: Adhesin, SULFATE ION
Authors:Ruer, S, Remaut, H.
Deposit date:2017-05-08
Release date:2017-06-21
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist.
Nature, 546, 2017
5VQ5
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BU of 5vq5 by Molmil
Crystal Structure of the Lectin Domain From the F17-like Adhesin, UclD
Descriptor: Adhesin, IODIDE ION
Authors:Klein, R.D, Spaulding, C.N, Dodson, K.W, Pinkner, J.S, Hultgren, S.J, Fremont, D.
Deposit date:2017-05-08
Release date:2017-05-24
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Selective depletion of uropathogenic E. coli from the gut by a FimH antagonist.
Nature, 546, 2017
7OIU
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BU of 7oiu by Molmil
Inner Membrane Complex (IMC) protomer structure (TrwM/VirB3, TrwK/VirB4, TrwG/VirB8tails) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwG protein, TrwK protein, TrwM protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-05-12
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7Q1V
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BU of 7q1v by Molmil
Arches protomer (trimer of TrwG/VirB8peri) structure from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwG protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-10-21
Release date:2022-06-22
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (6.18 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O3V
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BU of 7o3v by Molmil
Stalk complex structure (TrwJ/VirB5-TrwI/VirB6) from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwI protein, TrwJ protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-03
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.7 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O43
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BU of 7o43 by Molmil
TrwK/VirB4unbound dimer complex from R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwK protein
Authors:Vadakkepat, A.K, Mace, K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-04
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O3T
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BU of 7o3t by Molmil
I-layer structure (TrwF/VirB9NTD, TrwE/VirB10NTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-03
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O3J
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BU of 7o3j by Molmil
O-layer structure (TrwH/VirB7, TrwF/VirB9CTD, TrwE/VirB10CTD) of the outer membrane core complex from the fully-assembled R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwE protein, TrwF protein, TrwH protein
Authors:Mace, K, Vadakkepat, A.K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-01
Release date:2022-06-22
Last modified:2022-07-20
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022
7O42
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BU of 7o42 by Molmil
TrwK/VirB4unbound trimer of dimers complex (with Hcp1) from the R388 type IV secretion system determined by cryo-EM.
Descriptor: TrwK protein,Protein hcp1
Authors:Vadakkepat, A.K, Mace, K, Lukoyanova, N, Waksman, G.
Deposit date:2021-04-04
Release date:2022-06-22
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structure of a type IV secretion system.
Nature, 607, 2022

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數據於2024-10-09公開中

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