PDB: 45817 resultsInfo pagesStatus searchChemie searchBIRD

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7UL8	[T:Au+:T--pH 11] Metal-mediated DNA base pair in tensegrity triangle Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*CP*CP*TP*GP*TP*TP*TP*GP*GP*AP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*CP*CP*AP*TP*AP*CP*A)-3'), DNA (5'-D(P*CP*TP*GP*AP*TP*GP*T)-3'), ... Authors: Lu, B, Vecchioni, S, Seeman, N.C, Sha, R, Ohayon, Y.P. Deposit date: 2022-04-04 Release date: 2023-04-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (4.22 Å) Cite: Metal-Mediated DNA Nanotechnology in 3D: Structural Library by Templated Diffraction. Adv Mater, 35, 2023
479D	CRYSTAL STRUCTURE A DNA:RNA HYBRID DUPLEX, A DYNAMIC MODEL FOR RNASE H RECOGNITION Descriptor: DNA (5'-D(*CP*TP*CP*TP*TP*CP*TP*TP*C)-3'), RNA (5'-R(*GP*AP*AP*GP*AP*AP*GP*AP*G)-3') Authors: Xiong, Y, Sundaralingam, M. Deposit date: 1999-07-08 Release date: 2000-05-15 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structure of a DNA.RNA hybrid duplex with a polypurine RNA r(gaagaagag) and a complementary polypyrimidine DNA d(CTCTTCTTC). Nucleic Acids Res., 28, 2000
2E0G	DnaA N-terminal domain Descriptor: Chromosomal replication initiator protein dnaA Authors: Abe, Y, Katayama, T, Ueda, T, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-10-07 Release date: 2007-05-01 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and Function of DnaA N-Terminal Domains: Specific Sites and Mechanisms in Inter-DnaA Interaction and in DnaB Helicase Loading on oriC To be Published
4C2U	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, Form 1 Descriptor: DNA HELICASE II, FOR25, GLYCEROL, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-20 Release date: 2013-10-30 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.55 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
4C2T	Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA Descriptor: DNA HELICASE II, DNA STRAND FOR28, DNA STRAND REV28, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-20 Release date: 2013-10-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.997 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
3JX7	Bacillus cereus alkylpurine DNA glycosylase AlkD bound to DNA containing a 3-METHYLADENINE analog Descriptor: DNA (5'-D(*CP*CP*CP*GP*TP*TP*AP*GP*TP*CP*CP*G)-3'), DNA (5'-D(*CP*GP*GP*AP*CP*TP*(DZM)P*AP*CP*GP*GP*G)-3'), alkylpurine DNA glycosylase AlkD Authors: Rubinson, E.H, Eichman, B.F. Deposit date: 2009-09-18 Release date: 2010-09-22 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.6 Å) Cite: An unprecedented nucleic acid capture mechanism for excision of DNA damage. Nature, 468, 2010
3RHI	DNA-binding protein HU from Bacillus anthracis Descriptor: DNA-binding protein HU Authors: Osipiuk, J, Makowska-Grzyska, M, Hasseman, J, Anderson, W.F, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID) Deposit date: 2011-04-11 Release date: 2011-04-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.48 Å) Cite: DNA-binding protein HU from Bacillus anthracis. To be Published
1NOM	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF MNCL2 (5 MILLIMOLAR) Descriptor: DNA POLYMERASE BETA, MANGANESE (II) ION Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-19 Release date: 1996-11-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (3 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
7WB0	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state with flexible H2 domain Descriptor: NTS-DNA, RNA (115-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2022-03-30 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
4C30	Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2 Descriptor: DNA HELICASE II, DNA STRAND FOR25, DNA STRAND REV25, ... Authors: Stelter, M, Acajjaoui, S, McSweeney, S, Timmins, J. Deposit date: 2013-08-21 Release date: 2013-10-30 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One, 8, 2013
7WAY	PlmCasX-sgRNAv1-dsDNA ternary complex at nts loading state Descriptor: DNA (27-MER), DNA (33-MER), RNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
7WB1	PlmCasX-sgRNAv2-dsDNA ternary complex at nts loading state Descriptor: NTS-DNA, RNA (121-MER), TS-DNA, ... Authors: Zhang, S, Liu, J.J.G. Deposit date: 2021-12-15 Release date: 2022-03-16 Last modified: 2024-06-26 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Chimeric CRISPR-CasX enzymes and guide RNAs for improved genome editing activity. Mol.Cell, 82, 2022
4ED6	Human DNA polymerase eta - DNA ternary complex: Reaction in the AT crystal at pH 6.7 for 15 hr, Sideway translocation Descriptor: DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*TP*A)-3'), DNA (5'-D(*CP*AP*TP*TP*AP*TP*GP*AP*CP*GP*CP*T)-3'), DNA polymerase eta, ... Authors: Nakamura, T, Zhao, Y, Yang, W. Deposit date: 2012-03-27 Release date: 2012-07-11 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.211 Å) Cite: Watching DNA polymerase eta make a phosphodiester bond Nature, 487, 2012
3NIC	DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29kI inactive variant Y49F Descriptor: DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3'), Eco29kIR, ... Authors: Mak, A.N.S, Lambert, A.R, Stoddard, B.L. Deposit date: 2010-06-15 Release date: 2010-09-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
221D	INFLUENCE OF COUNTER-IONS ON THE CRYSTAL STRUCTURES OF DNA DECAMERS: BINDING OF [CO(NH3)6]3+ AND BA2+ TO A-DNA Descriptor: DNA (5'-D(*AP*CP*CP*GP*GP*CP*CP*GP*GP*T)-3') Authors: Gao, Y.-G, Robinson, H, Van Boom, J.H, Wang, A.H.-J. Deposit date: 1995-06-26 Release date: 1996-01-31 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Influence of counter-ions on the crystal structures of DNA decamers: binding of [Co(NH3)6]3+ and Ba2+ to A-DNA. Biophys.J., 69, 1995
138D	A-DNA DECAMER D(GCGGGCCCGC)-HEXAGONAL CRYSTAL FORM Descriptor: DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') Authors: Ramakrishnan, B, Sundaralingam, M. Deposit date: 1993-09-15 Release date: 1994-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. Biochemistry, 32, 1993
137D	A-DNA DECAMER D(GCGGGCCCGC)-ORTHORHOMBIC CRYSTAL FORM Descriptor: DNA (5'-D(*GP*CP*GP*GP*GP*CP*CP*CP*GP*C)-3') Authors: Ramakrishnan, B, Sundaralingam, M. Deposit date: 1993-09-15 Release date: 1994-01-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Evidence for crystal environment dominating base sequence effects on DNA conformation: crystal structures of the orthorhombic and hexagonal polymorphs of the A-DNA decamer d(GCGGGCCCGC) and comparison with their isomorphous crystal structures. Biochemistry, 32, 1993
3MX4	DNA binding and cleavage by the GIY-YIG endonuclease R.Eco29KI inactive variant E142Q Descriptor: DNA (5'-D(P*CP*GP*GP*GP*AP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*GP*CP*CP*GP*C)-3'), DNA (5'-D(P*GP*CP*GP*GP*CP*GP*GP*CP*CP*CP*GP*CP*GP*GP*GP*CP*CP*TP*CP*CP*CP*G)-3'), Eco29kIR Authors: Mak, A.N.S, Lambert, A.R, Stoddard, B.L. Deposit date: 2010-05-06 Release date: 2010-09-08 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Folding, DNA Recognition, and Function of GIY-YIG Endonucleases: Crystal Structures of R.Eco29kI. Structure, 18, 2010
5W7O	2-Se-T4-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant Descriptor: DNA (5'-D(*AP*TP*GP*(US3)P*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... Authors: Fang, Z, Yang, F, Huang, Z. Deposit date: 2017-06-20 Release date: 2017-06-28 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.75 Å) Cite: 2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
3OQG	Restriction endonuclease HPY188I in complex with substrate DNA Descriptor: CHLORIDE ION, DNA 5'-D(*GP*AP*TP*CP*TP*GP*AP*AP*C)-3', DNA 5'-D(*GP*TP*TP*CP*AP*GP*AP*TP*C)-3', ... Authors: Sokolowska, M, Czapinska, H, Bochtler, M. Deposit date: 2010-09-03 Release date: 2010-10-20 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Hpy188I-DNA pre- and post-cleavage complexes--snapshots of the GIY-YIG nuclease mediated catalysis. Nucleic Acids Res., 39, 2011
1B4Y	STRUCTURE AND MECHANISM OF FORMATION OF THE H-Y5 ISOMER OF AN INTRAMOLECULAR DNA TRIPLE HELIX. Descriptor: DNA (H-Y5 TRIPLE HELIX) Authors: Van Dongen, M.J.P, Doreleijers, J.F, Van Der Marel, G.A, Van Boom, J.H, Hilbers, C.W, Wijmenga, S.S. Deposit date: 1998-12-30 Release date: 1999-09-13 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: Structure and mechanism of formation of the H-y5 isomer of an intramolecular DNA triple helix. Nat.Struct.Biol., 6, 1999
1Q32	Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase Descriptor: tyrosyl-DNA phosphodiesterase Authors: He, X, Babaoglu, K, Price, A, Nitiss, K.C, Nitiss, J.L, White, S.W. Deposit date: 2003-07-28 Release date: 2004-09-07 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Mutation of a conserved active site residue converts tyrosyl-DNA phosphodiesterase I into a DNA topoisomerase I-dependent poison J.Mol.Biol., 372, 2007
1UGI	URACIL-DNA GLYCOSYLASE INHIBITOR PROTEIN Descriptor: IMIDAZOLE, SULFATE ION, URACIL-DNA GLYCOSYLASE INHIBITOR Authors: Putnam, C.D, Arvai, A.S, Mol, C.D, Tainer, J.A. Deposit date: 1998-11-04 Release date: 1999-03-25 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Protein mimicry of DNA from crystal structures of the uracil-DNA glycosylase inhibitor protein and its complex with Escherichia coli uracil-DNA glycosylase J.Mol.Biol., 287, 1999
5US2	2-Se-T2-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant Descriptor: DNA (5'-D(*AP*(US3)P*GP*TP*CP*G)-3'), MAGNESIUM ION, RNA (5'-R(*UP*CP*GP*AP*CP*A)-3'), ... Authors: Fang, Z, Yang, F, Huang, Z. Deposit date: 2017-02-13 Release date: 2017-03-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.9 Å) Cite: 2-Se-T-modified-DNA and native RNA hybrid in complex with RNase H catalytic domain D132N mutant To Be Published
6IUE	DNA helical wire containing Hg(II) Descriptor: DNA (5'-D(*TP*TP*TP*GP*C)-3'), MERCURY (II) ION Authors: Ono, A, Kanazawa, H, Ito, H, Goto, M, Nakamura, K, Saneyoshi, H, Kondo, J. Deposit date: 2018-11-28 Release date: 2019-10-16 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.901 Å) Cite: A Novel DNA Helical Wire Containing HgII-Mediated T:T and T:G Pairs. Angew.Chem.Int.Ed.Engl., 58, 2019

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