Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2ORO
DownloadVisualize
BU of 2oro by Molmil
Murine inducible nitric oxide synthase oxygenase domain (delta 114) (r)-1-(2-imidazol-1-yl-6-methyl-pyrimidin-4-yl)-pyrrolidine-2-carboxylic acid (2-benzo[1,3]dioxol-5-yl-ethyl)-amide complex
Descriptor: N-[2-(1,3-BENZODIOXOL-5-YL)ETHYL]-1-[2-(1H-IMIDAZOL-1-YL)-6-METHYLPYRIMIDIN-4-YL]-D-PROLINAMIDE, PROTOPORPHYRIN IX CONTAINING FE, SULFITE ION, ...
Authors:Adler, M, Whitlow, M.
Deposit date:2007-02-04
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2 Å)
Cite:Design, Synthesis, and Activity of 2-Imidazol-1-ylpyrimidine Derived Inducible Nitric Oxide Synthase Dimerization Inhibitors
J.Med.Chem., 50, 2007
9RCP
DownloadVisualize
BU of 9rcp by Molmil
1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive
Descriptor: 1,2-ETHANEDIOL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:1,2-propanediol dehydratase with 0.1 % 1,3-propanediol additive
To Be Published
9RCO
DownloadVisualize
BU of 9rco by Molmil
1,2-propanediol dehydratase with 0.1 % glycerol additive
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:1,2-propanediol dehydratase with 0.1 % glycerol additive
To Be Published
9RCQ
DownloadVisualize
BU of 9rcq by Molmil
1,2-propanediol dehydratase with no ligand additives
Descriptor: 1,2-ETHANEDIOL, Glycyl radical protein
Authors:Kalnins, G, Estere, M.
Deposit date:2025-05-29
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:1,2-propanediol dehydratase with no ligand additives
To Be Published
4WRH
DownloadVisualize
BU of 4wrh by Molmil
AKR1C3 complexed with breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide
Descriptor: 1,2-ETHANEDIOL, 2-[4-(aminomethyl)-2-chloro-6-methoxyphenoxy]-N-tert-butylacetamide, 5-methyl-4H-1,2,4-triazole-3-thiol, ...
Authors:Squire, C.J, Flanagan, J.U, Yosaatmadja, Y.
Deposit date:2014-10-24
Release date:2014-11-05
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Breakdown product of N-(tert-butyl)-2-(2-chloro-4-(((3-mercapto-5-methyl-4H-1,2,4-triazol-4-yl)amino)methyl)-6-methoxyphenoxy)acetamide trapped in active site of AKR1C3
To Be Published
4WZ5
DownloadVisualize
BU of 4wz5 by Molmil
Crystal structure of P. aeruginosa OXA10
Descriptor: Beta-lactamase OXA-10, CARBON DIOXIDE, SULFATE ION, ...
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2025-04-02
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
Acs Infect Dis., 1, 2015
4WYY
DownloadVisualize
BU of 4wyy by Molmil
Crystal Structure of P. aeruginosa AmpC
Descriptor: Beta-lactamase, DIMETHYL SULFOXIDE, GLYCEROL, ...
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.28 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
ACS Infect Dis, 1, 2015
6YTD
DownloadVisualize
BU of 6ytd by Molmil
CLK1 V324A mutant bound with benzothiazole Tg003 (Cpd 2)
Descriptor: (1~{Z})-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one, Dual specificity protein kinase CLK1
Authors:Schroeder, M, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-24
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity.
J.Med.Chem., 63, 2020
6YTE
DownloadVisualize
BU of 6yte by Molmil
CLK1 bound with benzothiazole Tg003 (Cpd 2)
Descriptor: (1~{Z})-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one, Dual specificity protein kinase CLK1
Authors:Schroeder, M, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-24
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity.
J.Med.Chem., 63, 2020
5EQV
DownloadVisualize
BU of 5eqv by Molmil
1.45 Angstrom Crystal Structure of Bifunctional 2',3'-cyclic Nucleotide 2'-phosphodiesterase/3'-Nucleotidase Periplasmic Precursor Protein from Yersinia pestis with Phosphate bound to the Active site
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, D-MALATE, FE (III) ION, ...
Authors:Minasov, G, Shuvalova, L, Brunzelle, J.S, Kiryukhina, O, Dubrovska, I, Grimshaw, S, Kwon, K, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2015-11-13
Release date:2015-11-25
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:1.45 Angstrom Crystal Structure of Bifunctional 2',3'-cyclic Nucleotide 2'-phosphodiesterase/3'-Nucleotidase Periplasmic Precursor Protein from Yersinia pestis with Phosphate bound to the Active site.
To Be Published
3ZK4
DownloadVisualize
BU of 3zk4 by Molmil
Structure of purple acid phosphatase PPD1 isolated from yellow lupin (Lupinus luteus) seeds
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, DIPHOSPHONUCLEOTIDE PHOSPHATASE 1, ...
Authors:Antonyuk, S.V, Strange, R.W.
Deposit date:2013-01-21
Release date:2014-01-29
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:The Structure of a Purple Acid Phosphatase Involved in Plant Growth and Pathogen Defence Exhibits a Novel Immunoglobulin-Like Fold
Iucrj, 1, 2014
8WL6
DownloadVisualize
BU of 8wl6 by Molmil
Structure of 1,3-beta-glucan synthase component FKS1
Descriptor: 1,3-beta-glucan synthase component FKS1
Authors:Li, J.L, Zhu, A.Q, Liu, J.X, Dai, X.L, Wang, X, Yan, C.Y, Deng, D.
Deposit date:2023-09-29
Release date:2025-02-19
Last modified:2025-03-12
Method:ELECTRON MICROSCOPY (3.16 Å)
Cite:Cryo-EM structure of the beta-1,3-glucan synthase FKS1-Rho1 complex.
Nat Commun, 16, 2025
8WLA
DownloadVisualize
BU of 8wla by Molmil
Cryo-EM structure of the beta-1,3-glucan synthase FKS1-Rho1 complex
Descriptor: 1,3-beta-glucan synthase component FKS1, GTP-binding protein RHO1
Authors:Li, J.L, Zhu, A.Q, Liu, J.X, Dai, X.L, Yan, C.Y, Deng, D, Wang, X.
Deposit date:2023-09-29
Release date:2025-02-19
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Cryo-EM structure of the beta-1,3-glucan synthase FKS1-Rho1 complex.
Nat Commun, 16, 2025
8BOE
DownloadVisualize
BU of 8boe by Molmil
Human Carbonic Anhydrase I in complex with (S)-4-(3-(1-(6-nitropyridin-2-yl)pyrrolidin-3-yl)thioureido)benzenesulfonamide
Descriptor: 1-[(3~{R})-1-(6-nitropyridin-2-yl)pyrrolidin-3-yl]-3-(4-sulfamoylphenyl)thiourea, Carbonic anhydrase 2, GLYCEROL, ...
Authors:Angeli, A, Ferraroni, M.
Deposit date:2022-11-15
Release date:2023-11-29
Last modified:2024-06-12
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:First-in-Class Dual Hybrid Carbonic Anhydrase Inhibitors and Transient Receptor Potential Vanilloid 1 Agonists Revert Oxaliplatin-Induced Neuropathy.
J.Med.Chem., 66, 2023
3NVS
DownloadVisualize
BU of 3nvs by Molmil
1.02 Angstrom resolution crystal structure of 3-phosphoshikimate 1-carboxyvinyltransferase from Vibrio cholerae in complex with shikimate-3-phosphate (partially photolyzed) and glyphosate
Descriptor: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID, 3-phosphoshikimate 1-carboxyvinyltransferase, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ...
Authors:Minasov, G, Light, S.H, Halavaty, A, Shuvalova, G, Papazisi, L, Anderson, W.F, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2010-07-08
Release date:2010-07-21
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.021 Å)
Cite:1.02 Angstrom Resolution Crystal Structure of 3-Phosphoshikimate 1-Carboxyvinyltransferase from Vibrio cholerae in complex with Shikimate-3-Phosphate (Partially Photolyzed) and Glyphosate
TO BE PUBLISHED
2K04
DownloadVisualize
BU of 2k04 by Molmil
Structure of SDF1 in complex with the CXCR4 N-terminus containing no sulfotyrosines
Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1
Authors:Volkman, B.F, Veldkamp, C.T, Peterson, F.C.
Deposit date:2008-01-24
Release date:2008-10-28
Last modified:2024-11-27
Method:SOLUTION NMR
Cite:Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12
Sci.Signal., 1, 2008
2K03
DownloadVisualize
BU of 2k03 by Molmil
Structure of SDF1 in complex with the CXCR4 N-terminus containing a sulfotyrosine at postition 21
Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1
Authors:Volkman, B.F, Veldkamp, C.T, Peterson, F.C.
Deposit date:2008-01-24
Release date:2008-10-28
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12
Sci.Signal., 1, 2008
2K01
DownloadVisualize
BU of 2k01 by Molmil
Structure of a locked SDF1 dimer
Descriptor: Stromal cell-derived factor 1
Authors:Volkman, B.F, Veldkamp, C.T, Peterson, F.C.
Deposit date:2008-01-23
Release date:2008-10-28
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12
Sci.Signal., 1, 2008
2K05
DownloadVisualize
BU of 2k05 by Molmil
Structure of SDF1 in complex with the CXCR4 N-terminus containing sulfotyrosines at postitions 7, 12 and 21
Descriptor: C-X-C chemokine receptor type 4, Stromal cell-derived factor 1
Authors:Volkman, B.F, Veldkamp, C.T, Peterson, F.C.
Deposit date:2008-01-24
Release date:2008-10-28
Last modified:2024-11-06
Method:SOLUTION NMR
Cite:Structural basis of CXCR4 sulfotyrosine recognition by the chemokine SDF-1/CXCL12.
Sci.Signal., 1, 2008
3O0F
DownloadVisualize
BU of 3o0f by Molmil
Crystal structure of a putative metal-dependent phosphoesterase (BAD_1165) from bifidobacterium adolescentis atcc 15703 at 1.94 A resolution
Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, FE (III) ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2010-07-19
Release date:2010-08-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Crystal structure of a metal-dependent phosphoesterase (YP_910028.1) from Bifidobacterium adolescentis: Computational prediction and experimental validation of phosphoesterase activity.
Proteins, 79, 2011
3NTC
DownloadVisualize
BU of 3ntc by Molmil
Crystal structure of KD-247 Fab, an anti-V3 antibody that inhibits HIV-1 Entry
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Fab heavy chain, ...
Authors:Sarafianos, S.G, Kirby, K.A.
Deposit date:2010-07-03
Release date:2010-08-25
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247.
Faseb J., 29, 2015
3NUU
DownloadVisualize
BU of 3nuu by Molmil
phosphoinositide-dependent kinase-1 (PDK1) with fragment11
Descriptor: 3,4-dihydroisoquinolin-1(2H)-one, GLYCEROL, PkB-like, ...
Authors:Campobasso, N, Ward, P.
Deposit date:2010-07-07
Release date:2011-05-25
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.9803 Å)
Cite:Aminoindazole PDK1 Inhibitors: A Case Study in Fragment-Based Drug Discovery.
ACS Med Chem Lett, 1, 2010
4WZ4
DownloadVisualize
BU of 4wz4 by Molmil
Crystal structure of P. aeruginosa AmpC
Descriptor: Beta-lactamase, GLYCEROL, {(3R)-6-[(3-amino-1,2,4-thiadiazol-5-yl)oxy]-1-hydroxy-4,5-dimethyl-1,3-dihydro-2,1-benzoxaborol-3-yl}acetic acid
Authors:Ferguson, A.D.
Deposit date:2014-11-18
Release date:2015-08-05
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.05 Å)
Cite:4,5-Disubstituted 6-Aryloxy-1,3-dihydrobenzo[c][1,2]oxaboroles Are Broad-Spectrum Serine beta-Lactamase Inhibitors.
ACS Infect Dis, 1, 2015
6Q3R
DownloadVisualize
BU of 6q3r by Molmil
ASPERGILLUS ACULEATUS GALACTANASE
Descriptor: 1,2-ETHANEDIOL, 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]-ETHOXY}-ETHANE, ACETATE ION, ...
Authors:Muderspach, S.J, Torpenholt, S, Lo Leggio, L, Poulsen, J.C.N.
Deposit date:2018-12-04
Release date:2019-06-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:Structure of Aspergillus aculeatus beta-1,4-galactanase in complex with galactobiose.
Acta Crystallogr.,Sect.F, 75, 2019
6YTW
DownloadVisualize
BU of 6ytw by Molmil
CLK3 bound with benzothiazole Tg003 (Cpd 2)
Descriptor: (1~{Z})-1-(3-ethyl-5-methoxy-1,3-benzothiazol-2-ylidene)propan-2-one, 1,2-ETHANEDIOL, CHLORIDE ION, ...
Authors:Schroeder, M, Chaikuad, A, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2020-04-24
Release date:2020-07-15
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2 Å)
Cite:DFG-1 Residue Controls Inhibitor Binding Mode and Affinity, Providing a Basis for Rational Design of Kinase Inhibitor Selectivity.
J.Med.Chem., 63, 2020

237992

數據於2025-06-25公開中

PDB statisticsPDBj update infoContact PDBjnumon