PDB: 45953 resultsInfo pagesStatus searchChemie searchBIRD

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5K1Y	P2(1) Structure of pNOB8 AspA-DNA complex Descriptor: AspA, DNA (33-MER) Authors: Schumacher, M. Deposit date: 2016-05-18 Release date: 2016-06-15 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.97 Å) Cite: Detailed structural analysis of AspA-DNA contacts To Be Published
1C20	SOLUTION STRUCTURE OF THE DNA-BINDING DOMAIN FROM THE DEAD RINGER PROTEIN Descriptor: DEAD RINGER PROTEIN Authors: Iwahara, J, Clubb, R.T. Deposit date: 1999-07-22 Release date: 1999-11-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the DNA binding domain from Dead ringer, a sequence-specific AT-rich interaction domain (ARID). EMBO J., 18, 1999
5OGS	Crystal structure of human AND-1 SepB domain Descriptor: MALONATE ION, WD repeat and HMG-box DNA-binding protein 1 Authors: Pellegrini, L, Simon, A.C. Deposit date: 2017-07-13 Release date: 2017-11-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.503 Å) Cite: The human CTF4-orthologue AND-1 interacts with DNA polymerase alpha /primase via its unique C-terminal HMG box. Open Biol, 7, 2017
4BNC	Crystal structure of the DNA-binding domain of human ETV1 complexed with DNA Descriptor: 5'-D(*AP*CP*CP*GP*GP*AP*AP*GP*TP*GP)-3', 5'-D(*CP*AP*CP*TP*TP*CP*CP*GP*GP*TP)-3', HUMAN ETV1 Authors: Allerston, C.K, Cooper, C.D.O, Krojer, T, Chaikuad, A, Vollmar, M, Froese, D.S, Arrowsmith, C.H, Edwards, A, Bountra, C, von Delft, F, Gileadi, O. Deposit date: 2013-05-14 Release date: 2013-07-03 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structures of the Ets Domains of Transcription Factors Etv1, Etv4, Etv5 and Fev: Determinants of DNA Binding and Redox Regulation by Disulfide Bond Formation. J.Biol.Chem., 290, 2015
1P47	Crystal Structure of tandem Zif268 molecules complexed to DNA Descriptor: 5'-D(*CP*AP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*A)-3', 5'-D(*GP*TP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3', Early growth response protein 1, ... Authors: Peisach, E, Pabo, C.O. Deposit date: 2003-04-21 Release date: 2003-06-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Constraints for Zinc Finger Linker Design as Inferred from X-ray Crystal Structure of Tandem Zif268-DNA Complexes J.Mol.Biol., 330, 2003
7Z0R	AtWRKY18 DNA-binding domain Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 1,2-ETHANEDIOL, NITRATE ION, ... Authors: Grzechowiak, M, Jaskolski, M, Ruszkowski, M. Deposit date: 2022-02-23 Release date: 2022-06-22 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.66 Å) Cite: New aspects of DNA recognition by group II WRKY transcription factor revealed by structural and functional study of AtWRKY18 DNA binding domain. Int.J.Biol.Macromol., 213, 2022
1IO4	CRYSTAL STRUCTURE OF RUNX-1/AML1/CBFALPHA RUNT DOMAIN-CBFBETA CORE DOMAIN HETERODIMER AND C/EBPBETA BZIP HOMODIMER BOUND TO A DNA FRAGMENT FROM THE CSF-1R PROMOTER Descriptor: CAAT/ENHANCER BINDING PROTEIN BETA, CORE-BINDING FACTOR, BETA SUBUNIT, ... Authors: Tahirov, T.H, Ogata, K. Deposit date: 2001-01-10 Release date: 2001-03-12 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural analyses of DNA recognition by the AML1/Runx-1 Runt domain and its allosteric control by CBFbeta. Cell(Cambridge,Mass.), 104, 2001
2DUD	Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB) Descriptor: Single-stranded DNA-binding protein Authors: Dong, X, Bessho, Y, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-07-21 Release date: 2007-01-21 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB) To be Published
1JJH	E2 DNA-binding Domain from Bovine Papillomavirus Type 1 Descriptor: REGULATORY PROTEIN E2 Authors: Hegde, R.S, Wang, A.F, Kim, S.S, Schapira, M. Deposit date: 2001-07-05 Release date: 2001-07-18 Last modified: 2017-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Subunit rearrangement accompanies sequence-specific DNA binding by the bovine papillomavirus-1 E2 protein. J.Mol.Biol., 276, 1998
3IGM	A 2.2A crystal structure of the AP2 domain of PF14_0633 from P. falciparum, bound as a domain-swapped dimer to its cognate DNA Descriptor: 5'-D(*TP*GP*CP*AP*TP*GP*CP*A)-3', PF14_0633 protein Authors: Lindner, S.E, De Silva, E, Keck, J.L, Llinas, M. Deposit date: 2009-07-28 Release date: 2009-11-10 Last modified: 2017-11-01 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Determinants of DNA Binding by a P. falciparum ApiAP2 Transcriptional Regulator. J.Mol.Biol., 395, 2010
5EUG	CRYSTALLOGRAPHIC AND ENZYMATIC STUDIES OF AN ACTIVE SITE VARIANT H187Q OF ESCHERICHIA COLI URACIL DNA GLYCOSYLASE: CRYSTAL STRUCTURES OF MUTANT H187Q AND ITS URACIL COMPLEX Descriptor: PROTEIN (GLYCOSYLASE), URACIL Authors: Xiao, G, Tordova, M, Drohat, A.C, Jagadeesh, J, Stivers, J.T, Gilliland, G.L. Deposit date: 1998-12-27 Release date: 1999-07-23 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of Escherichia coli uracil DNA glycosylase and its complexes with uracil and glycerol: structure and glycosylase mechanism revisited. Proteins, 35, 1999
2UZK	Crystal structure of the human FOXO3a-DBD bound to DNA Descriptor: 5'-D(*CP*TP*AP*TP*GP*TP*AP*AP*AP*CP*AP*AP*C)-3', 5'-D(*GP*TP*TP*GP*TP*TP*TP*AP*CP*AP*TP*AP*G)-3', FORKHEAD BOX PROTEIN O3A Authors: Tsai, K.-L, Sun, Y.-J, Huang, C.-Y, Yang, J.-Y, Hung, M.-C, Hsiao, C.-D. Deposit date: 2007-04-30 Release date: 2008-05-13 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Crystal Structure of the Human Foxo3A-Dbd/DNA Complex Suggests the Effects of Post-Translational Modification. Nucleic Acids Res., 35, 2007
5ODM	NtiPr polyamide in complex with 5'CGATGTACTACG3 Descriptor: 3-(3-azaniumylpropanoylamino)propyl-dimethyl-azanium, 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID, 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID, ... Authors: Padroni, G, Parkinson, J, Burley, G.A. Deposit date: 2017-07-06 Release date: 2017-12-06 Last modified: 2023-11-15 Method: SOLUTION NMR Cite: Structural basis of DNA duplex distortion induced by thiazole-containing hairpin polyamides. Nucleic Acids Res., 46, 2018
2CDM	The structure of TrwC complexed with a 27-mer DNA comprising the recognition hairpin and the cleavage site Descriptor: 5'-D(*GP*CP*GP*CP*AP*CP*CP*GP*AP*AP *AP*GP*GP*TP*GP*CP*GP*TP*AP*TP*TP*GP*TP*CP*TP*AP*T)-3', SULFATE ION, TRWC Authors: Boer, R, Russi, S, Guasch, A, Lucas, M, Blanco, A.G, Perez-Luque, R, Coll, M, de la Cruz, F. Deposit date: 2006-01-25 Release date: 2006-07-31 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Unveiling the Molecular Mechanism of a Conjugative Relaxase: The Structure of Trwc Complexed with a 27-mer DNA Comprising the Recognition Hairpin and the Cleavage Site. J.Mol.Biol., 358, 2006
4GYZ	Mus Musculus Tdp2 Bound to dAMP and Mg2+ Descriptor: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE, CHLORIDE ION, MAGNESIUM ION, ... Authors: Schellenberg, M.J, Williams, R.S. Deposit date: 2012-09-05 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.556 Å) Cite: Mechanism of repair of 5'-topoisomerase II-DNA adducts by mammalian tyrosyl-DNA phosphodiesterase 2. Nat.Struct.Mol.Biol., 19, 2012
2O19	Structure of E. coli topoisomersae III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 5.5 Descriptor: 5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3', ACETIC ACID, CHLORIDE ION, ... Authors: Changela, A, DiGate, R, Mondragon, A. Deposit date: 2006-11-28 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate. J.Mol.Biol., 368, 2007
2O59	Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol pH 8.0 Descriptor: 5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3', ACETIC ACID, CHLORIDE ION, ... Authors: Changela, A, DiGate, R.J, Mondragon, A. Deposit date: 2006-12-05 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate. J.Mol.Biol., 368, 2007
2WAZ	N512P mutant of the DNA binding domain of the Adenovirus 5 ssDNA binding protein Descriptor: E2A DNA-BINDING PROTEIN, ZINC ION Authors: Hendle, J, Kanellopoulos, P.N, Tucker, P.A. Deposit date: 2009-02-19 Release date: 2010-03-31 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: High Resolution Structures of the Adenovirus Single-Stranded DNA Binding Protein and the N512P Hinge-Region Mutant To be Published
1ARE	STRUCTURES OF DNA-BINDING MUTANT ZINC FINGER DOMAINS: IMPLICATIONS FOR DNA BINDING Descriptor: YEAST TRANSCRIPTION FACTOR ADR1, ZINC ION Authors: Hoffman, R.C, Xu, R.X, Horvath, S.J, Herriott, J.R, Klevit, R.E. Deposit date: 1993-10-01 Release date: 1994-01-31 Last modified: 2024-04-10 Method: SOLUTION NMR Cite: Structures of DNA-binding mutant zinc finger domains: implications for DNA binding. Protein Sci., 2, 1993
1JT0	Crystal structure of a cooperative QacR-DNA complex Descriptor: HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION, QACA operator, SULFATE ION Authors: Schumacher, M.A, Miller, M.C, Grkovic, S, Brown, M.H, Skurray, R.A, Brennan, R.G. Deposit date: 2001-08-20 Release date: 2002-03-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis for cooperative DNA binding by two dimers of the multidrug-binding protein QacR. EMBO J., 21, 2002
2K7F	HADDOCK calculated model of the complex between the BRCT region of RFC p140 and dsDNA Descriptor: 5'-D(P*DCP*DGP*DAP*DCP*DCP*DTP*DCP*DGP*DAP*DGP*DAP*DTP*DCP*DA)-3', 5'-D(P*DCP*DTP*DCP*DGP*DAP*DGP*DGP*DTP*DCP*DG)-3', Replication factor C subunit 1 Authors: Kobayashi, M, Ab, E, Bonvin, A, Siegal, G. Deposit date: 2008-08-10 Release date: 2009-09-08 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Structure of the DNA-bound BRCA1 C-terminal region from human replication factor C p140 and model of the protein-DNA complex. J.Biol.Chem., 285, 2010
1PYC	CYP1 (HAP1) DNA-BINDING DOMAIN (RESIDUES 60-100), NMR, 15 STRUCTURES Descriptor: CYP1, ZINC ION Authors: Timmerman, J, Vuidepot, A.-L, Bontems, F, Lallemand, J.-Y, Gervais, M, Shechter, E, Guiard, B. Deposit date: 1996-02-17 Release date: 1996-08-01 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: 1H, 15N resonance assignment and three-dimensional structure of CYP1 (HAP1) DNA-binding domain. J.Mol.Biol., 259, 1996
2O5E	Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glucose pH 7.0 Descriptor: 5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3', CHLORIDE ION, DNA topoisomerase 3, ... Authors: Changela, A, DiGate, R.J, Mondragon, A. Deposit date: 2006-12-05 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate. J.Mol.Biol., 368, 2007
2O54	Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glycerol at pH 7.0 Descriptor: 5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3', ACETIC ACID, CHLORIDE ION, ... Authors: Changela, A, Digate, R.J, Mondragon, A. Deposit date: 2006-12-05 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate. J.Mol.Biol., 368, 2007
2O5C	Structure of E. coli topoisomerase III in complex with an 8-base single stranded oligonucleotide. Frozen in glucose pH 5.5 Descriptor: 5'-D(*CP*GP*CP*AP*AP*CP*TP*T)-3', CHLORIDE ION, DNA topoisomerase 3, ... Authors: Changela, A, DiGate, R.J, Mondragon, A. Deposit date: 2006-12-05 Release date: 2007-04-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural Studies of E. coli Topoisomerase III-DNA Complexes Reveal a Novel Type IA Topoisomerase-DNA Conformational Intermediate. J.Mol.Biol., 368, 2007

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