9K0B
 
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5XTU
 | | Crystal Structure of GDSL Esterase of Photobacterium sp. J15 | | Descriptor: | 1,2-ETHANEDIOL, CACODYLATE ION, CALCIUM ION, ... | | Authors: | Mazlan, S.N.H.S, Jonet, M.A, Leow, T.C, Ali, M.S.M, Rahman, R.N.Z.R.A. | | Deposit date: | 2017-06-21 | | Release date: | 2018-10-10 | | Last modified: | 2025-04-09 | | Method: | X-RAY DIFFRACTION (1.38 Å) | | Cite: | Crystallization and structure elucidation of GDSL esterase of Photobacterium sp. J15.
Int. J. Biol. Macromol., 119, 2018
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9K0A
 | | Structure of Pictet-Spenglerases KslB in complex with product | | Descriptor: | (1~{S},3~{S})-1-(3-hydroxy-3-oxopropyl)-2,3,4,9-tetrahydropyrido[3,4-b]indole-1,3-dicarboxylic acid, Cucumopine synthase C-terminal helical bundle domain-containing protein, GLYCEROL | | Authors: | Mori, T, Renata, H, Abe, I. | | Deposit date: | 2024-10-15 | | Release date: | 2025-06-18 | | Method: | X-RAY DIFFRACTION (2.17 Å) | | Cite: | Structure of Pictet-Spenglerases KslB in complex with product
To Be Published
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9KMA
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5XG7
 | | Galectin-13/Placental Protein 13 crystal structure | | Descriptor: | Galactoside-binding soluble lectin 13 | | Authors: | Su, J.Y, Wang, Y. | | Deposit date: | 2017-04-12 | | Release date: | 2018-01-31 | | Last modified: | 2024-11-13 | | Method: | X-RAY DIFFRACTION (1.55 Å) | | Cite: | Galectin-13, a different prototype galectin, does not bind beta-galacto-sides and forms dimers via intermolecular disulfide bridges between Cys-136 and Cys-138
Sci Rep, 8, 2018
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9IVU
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9KUK
 | | Bovine Heart Cytochrome c Oxidase in the Xenon-bound Fully Oxidized State under Aerobic Condition | | Descriptor: | (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, 1,2-ETHANEDIOL, ... | | Authors: | Muramoto, K, Shinzawa-Itoh, K. | | Deposit date: | 2024-12-04 | | Release date: | 2025-07-02 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | The binding sites of carbon dioxide, nitrous oxide, and xenon reveal a putative exhaust channel for bovine cytochrome c oxidase.
J.Biol.Chem., 2025
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9J1N
 | | Mouse Spi-B Ets domain in complex with DNA containing AGAA sequence | | Descriptor: | (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, DNA (5'-D(*(3D1)P*TP*GP*AP*AP*AP*AP*GP*AP*GP*AP*AP*TP*TP*GP*G)-3'), DNA (5'-D(*(THM)P*CP*CP*AP*AP*TP*TP*CP*TP*CP*TP*TP*TP*TP*CP*A)-3'), ... | | Authors: | Nonaka, Y, Kamitori, S. | | Deposit date: | 2024-08-05 | | Release date: | 2025-06-18 | | Method: | X-RAY DIFFRACTION (2.24 Å) | | Cite: | Structural analysis of Spi-B DNA-binding Ets domain recognizing 5'-AGAA-3' and 5'-GGAA-3' sequences.
Biochem.Biophys.Res.Commun., 749, 2025
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9KYM
 | | Folate ECF transporter affected by PFOS | | Descriptor: | Energy-coupling factor transporter ATP-binding protein EcfA1, Energy-coupling factor transporter ATP-binding protein EcfA2, Energy-coupling factor transporter transmembrane protein EcfT, ... | | Authors: | Gao, Y, Wang, Z. | | Deposit date: | 2024-12-09 | | Release date: | 2025-06-18 | | Method: | ELECTRON MICROSCOPY (3.93 Å) | | Cite: | First Cryo-EM Structural Observation on the Interaction of Folate ECF Transporter with Perfluoroalkyl Substances
To Be Published
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9IZS
 | | Cryo-EM structure of CasLambda2-crRNA-target DNA ternary complex in the TS-cleaving state | | Descriptor: | Cas Lambda2, DNA (40-MER), MAGNESIUM ION, ... | | Authors: | Omura, S.N, Hirano, H, Itoh, Y, Nureki, O. | | Deposit date: | 2024-08-01 | | Release date: | 2025-06-11 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (2.84 Å) | | Cite: | Structural basis for target DNA cleavage and guide RNA processing by CRISPR-Cas lambda 2.
Commun Biol, 8, 2025
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9IVT
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5XVS
 | | Crystal structure of UDP-GlcNAc 2-epimerase NeuC complexed with UDP | | Descriptor: | 2-acetamido-2-deoxy-beta-D-glucopyranose, GDP/UDP-N,N'-diacetylbacillosamine 2-epimerase (Hydrolyzing), LITHIUM ION, ... | | Authors: | Ko, T.P, Hsieh, T.J, Chen, S.C, Wu, S.C, Guan, H.H, Yang, C.H, Chen, C.J, Chen, Y. | | Deposit date: | 2017-06-28 | | Release date: | 2018-04-11 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.383 Å) | | Cite: | The tetrameric structure of sialic acid-synthesizing UDP-GlcNAc 2-epimerase fromAcinetobacter baumannii: A comparative study with human GNE.
J. Biol. Chem., 293, 2018
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5XVQ
 | | Crystal structure of monkey Nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl Nicotinamide (MNA) | | Descriptor: | 3-carbamoyl-1-methylpyridin-1-ium, GLYCEROL, Nicotinamide N-methyltransferase (NNMT), ... | | Authors: | Birudukota, S, Swaminathan, S, Thakur, M.K, Parveen, R, Kandan, S, Kannt, A, Gosu, R. | | Deposit date: | 2017-06-28 | | Release date: | 2017-08-02 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (2.29 Å) | | Cite: | Crystal structures of monkey and mouse nicotinamide N-methyltransferase (NNMT) bound with end product, 1-methyl nicotinamide
Biochem. Biophys. Res. Commun., 491, 2017
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9J7W
 | | Channel Rhodospin from Klebsormidium nitens (KnChR) | | Descriptor: | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, KnChR, RETINAL | | Authors: | Wang, Y.Z, Akasaka, H, Tanaka, T, Sano, F.K, Shihoya, W, Nureki, O. | | Deposit date: | 2024-08-20 | | Release date: | 2025-07-02 | | Last modified: | 2025-07-09 | | Method: | ELECTRON MICROSCOPY (2.69 Å) | | Cite: | Cryo-EM structure of a blue-shifted channelrhodopsin from Klebsormidium nitens.
Nat Commun, 16, 2025
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9J8A
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9J9L
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5XW4
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9J1O
 | | Mouse Spi-B Ets domain in complex with DNA containing GGAA sequence | | Descriptor: | (2R,3S,5R)-5-(6-amino-9H-purin-9-yl)-tetrahydro-2-(hydroxymethyl)furan-3-ol, DNA (5'-D(*(3D1)P*TP*GP*AP*AP*AP*AP*GP*GP*GP*AP*AP*TP*TP*GP*G)-3'), DNA (5'-D(*(THM)P*CP*CP*AP*AP*TP*TP*CP*CP*CP*TP*TP*TP*TP*CP*A)-3'), ... | | Authors: | Nonaka, Y, Kamitori, S. | | Deposit date: | 2024-08-05 | | Release date: | 2025-06-18 | | Method: | X-RAY DIFFRACTION (2.23 Å) | | Cite: | Structural analysis of Spi-B DNA-binding Ets domain recognizing 5'-AGAA-3' and 5'-GGAA-3' sequences.
Biochem.Biophys.Res.Commun., 749, 2025
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9J3P
 | | Human Pigment Epithelium-Derived Factor with Zinc Ions Crystallized in P2(1)2(1)2(1) Space Group | | Descriptor: | 2-(2-METHOXYETHOXY)ETHANOL, Pigment epithelium-derived factor, SULFATE ION, ... | | Authors: | Belousov, A.S, Chistyakov, D.V, Baksheeva, V.E, Bulgakov, T.K, Bukhdruker, S.S, Zamyatnin, A.A, Zinchenko, D.V, Tsvetkov, P.O, Permyakov, S.E, Zernii, E.Y, Borshchevskiy, V.I. | | Deposit date: | 2024-08-08 | | Release date: | 2025-06-18 | | Last modified: | 2025-07-02 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Zinc-mediated mechanism of neurodegeneration in glaucoma: a role of pigment epithelium-derived factor
To Be Published
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5XWZ
 | | Crystal structure of a lactonase from Cladophialophora bantiana | | Descriptor: | GLYCEROL, MALONATE ION, SODIUM ION, ... | | Authors: | Zheng, Y.Y, Liu, W.T, Liu, W.D, Chen, C.C, Guo, R.T. | | Deposit date: | 2017-06-30 | | Release date: | 2018-05-02 | | Last modified: | 2023-11-22 | | Method: | X-RAY DIFFRACTION (1.75 Å) | | Cite: | Characterization and crystal structure of a novel zearalenone hydrolase from Cladophialophora bantiana
Acta Crystallogr F Struct Biol Commun, 73, 2017
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9IZP
 | | Cryo-EM structure of CasLambda2-crRNA-target DNA ternary complex in the incompetent state | | Descriptor: | Cas Lambda2, DNA (40-MER), MAGNESIUM ION, ... | | Authors: | Omura, S.N, Hirano, H, Itoh, Y, Nureki, O. | | Deposit date: | 2024-08-01 | | Release date: | 2025-06-11 | | Last modified: | 2025-06-25 | | Method: | ELECTRON MICROSCOPY (2.89 Å) | | Cite: | Structural basis for target DNA cleavage and guide RNA processing by CRISPR-Cas lambda 2.
Commun Biol, 8, 2025
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5XXE
 | | Crystal structure of Poz1 and Tpz1 | | Descriptor: | Protection of telomeres protein poz1, Protection of telomeres protein tpz1, SULFATE ION, ... | | Authors: | Xue, J, Chen, H, Wu, J, Lei, M. | | Deposit date: | 2017-07-03 | | Release date: | 2017-12-20 | | Last modified: | 2024-11-20 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Structure of the fission yeast S. pombe telomeric Tpz1-Poz1-Rap1 complex.
Cell Res., 27, 2017
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9JQ5
 | | Structure of human IVD in complex with FAD and isovaleryl-CoA | | Descriptor: | FLAVIN-ADENINE DINUCLEOTIDE, Isovaleryl-CoA dehydrogenase, mitochondrial, ... | | Authors: | Ju, K, Xu, Y, Bai, F, Luan, X. | | Deposit date: | 2024-09-27 | | Release date: | 2025-06-11 | | Method: | ELECTRON MICROSCOPY (3.35 Å) | | Cite: | Structural Insights into Isovaleryl-Coenzyme A Dehydrogenase: Mechanisms of Substrate Specificity and Implications of Isovaleric Acidemia-Associated Mutations
Res, 8
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9KTL
 | | Cryo-EM structure of reduced form of formate dehydrogenase from Rhodobacter aestuarii (RaFDH) with NADH | | Descriptor: | 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE, 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE, FE2/S2 (INORGANIC) CLUSTER, ... | | Authors: | Zhang, K, Zhang, L. | | Deposit date: | 2024-12-02 | | Release date: | 2025-06-18 | | Method: | ELECTRON MICROSCOPY (3.09 Å) | | Cite: | Mechanistic understanding on the catalytic preference of formate dehydrogenase from Rhodobacter aestuarii towards carbon dioxide reduction
To Be Published
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5X4Z
 | | RNA Polymerase II from Komagataella Pastoris (Type-1 crystal) | | Descriptor: | DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit beta, RNA polymerase II subunit, ... | | Authors: | Ehara, H, Umehara, T, Sekine, S, Yokoyama, S. | | Deposit date: | 2017-02-14 | | Release date: | 2017-05-17 | | Last modified: | 2024-10-16 | | Method: | X-RAY DIFFRACTION (7.8 Å) | | Cite: | Crystal structure of RNA polymerase II from Komagataella pastoris
Biochem. Biophys. Res. Commun., 487, 2017
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