PDB: 216602 resultsInfo pagesStatus searchChemie searchBIRD

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1M7D	Crystal structure of a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide complexed with a trisaccharide Descriptor: alpha-L-rhamnopyranose-(1-3)-alpha-L-Olivopyranose-(1-3)-methyl 2-acetamido-2-deoxy-beta-D-glucopyranoside, heavy chain of the monoclonal antibody Fab SYA/J6, light chain of the monoclonal antibody Fab SYA/J6 Authors: Vyas, N.K, Vyas, M.N, Chervenak, M.C, Johnson, M.A, Pinto, B.M, Bundle, D.R, Quiocho, F.A. Deposit date: 2002-07-19 Release date: 2003-07-22 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Molecular Recognition of Oligosaccharide Epitopes by a Monoclonal Fab Specific for Shigella flexneri Y Lipopolysaccharide: X-ray Structures and Thermodynamics Biochemistry, 41, 2002
5GYJ	Structure of catalytically active sortase from Clostridium difficile Descriptor: Putative peptidase C60B, sortase B Authors: Yin, J.-C, Fei, C.-H, Hsiao, Y.-Y, Nix, J.C, Huang, I.-H, Wang, S. Deposit date: 2016-09-22 Release date: 2017-01-04 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.801 Å) Cite: Structural Insights into Substrate Recognition by Clostridium difficile Sortase. Front Cell Infect Microbiol, 6, 2016
4F9F	Crystal Structure of VldE, the pseudo-glycosyltransferase, in complex with GDP and Trehalose Descriptor: GUANOSINE-5'-DIPHOSPHATE, VldE, alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose Authors: Cavalier, M.C, Yim, Y.-S, Asamizu, S, Neau, D, Almabruk, K.H, Mahmud, T, Lee, Y.-H. Deposit date: 2012-05-18 Release date: 2012-10-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.807 Å) Cite: Mechanistic Insights into Validoxylamine A 7'-Phosphate Synthesis by VldE Using the Structure of the Entire Product Complex. Plos One, 7, 2012
5VLK	Short PCSK9 delta-P' complex with shrunken peptide bearing homo-Arginine Descriptor: ACE-THR-VAL-PHE-THR-SER-TRP-GLU-GLU-TYR-LEU-ASP-TRP-VAL-NH2 peptide, ACE-TRP-ASN-LEU-VAL-HRG-ILE-GLY-LEU-LEU peptide, CALCIUM ION, ... Authors: Eigenbrot, C, Ultsch, M. Deposit date: 2017-04-25 Release date: 2017-08-16 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Discovery of a cryptic peptide-binding site on PCSK9 and design of antagonists. Nat. Struct. Mol. Biol., 24, 2017
5VK7	aspartate aminotransferase pH 4.0 Descriptor: Aspartate aminotransferase, cytoplasmic Authors: Dajnowicz, S, Kovalevsky, A.Y, Mueser, T.C. Deposit date: 2017-04-21 Release date: 2017-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Direct visualization of critical hydrogen atoms in a pyridoxal 5'-phosphate enzyme. Nat Commun, 8, 2017
7RHN	Co-crystal structure of Q67H mutant of disulfide stabilized HIV-1 CA hexamer and lenacapavir Descriptor: CHLORIDE ION, Capsid protein p24, IODIDE ION, ... Authors: Bester, S.M, Kvaratskhelia, M. Deposit date: 2021-07-17 Release date: 2022-07-27 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.46 Å) Cite: Structural and Mechanistic Bases of Viral Resistance to HIV-1 Capsid Inhibitor Lenacapavir. Mbio, 13, 2022
5GZB	Crystal Structure of Transcription Factor TEAD4 in Complex with M-CAT DNA Descriptor: DNA (5'-D(*GP*AP*GP*AP*GP*GP*AP*AP*TP*GP*CP*AP*A)-3'), DNA (5'-D(*TP*TP*GP*CP*AP*TP*TP*CP*CP*TP*CP*TP*C)-3'), GLYCEROL, ... Authors: He, F, Shi, Z.B, Zhou, Z.C. Deposit date: 2016-09-28 Release date: 2017-04-19 Last modified: 2017-08-09 Method: X-RAY DIFFRACTION (2.704 Å) Cite: DNA-binding mechanism of the Hippo pathway transcription factor TEAD4 Oncogene, 36, 2017
6DAT	ETS1 in complex with synthetic SRR mimic Descriptor: Protein C-ets-1, SULFATE ION, serine-rich region (SRR) peptide Authors: Perez-Borrajero, C, Okon, M, Lin, C.S, Scheu, K, Murphy, M.E.P, Graves, B.J, McIntosh, L.P. Deposit date: 2018-05-02 Release date: 2019-01-16 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.35002637 Å) Cite: The Biophysical Basis for Phosphorylation-Enhanced DNA-Binding Autoinhibition of the ETS1 Transcription Factor. J. Mol. Biol., 431, 2019
7M6M	Full length alpha1 Glycine receptor in presence of 32uM Tetrahydrocannabinol Descriptor: (6aR,10aR)-6,6,9-trimethyl-3-pentyl-6a,7,8,10a-tetrahydro-6H-benzo[c]chromen-1-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Glycine receptor subunit alphaZ1 Authors: Kumar, A, Chakrapani, S. Deposit date: 2021-03-26 Release date: 2022-08-03 Last modified: 2022-09-07 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs. Nat Commun, 13, 2022
7M6Q	Full length alpha1 Glycine receptor in presence of 1mM Glycine and 32uM Tetrahydrocannabinol State 1 Descriptor: (6aR,10aR)-6,6,9-trimethyl-3-pentyl-6a,7,8,10a-tetrahydro-6H-benzo[c]chromen-1-ol, 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCINE, ... Authors: Kumar, A, Chakrapani, S. Deposit date: 2021-03-26 Release date: 2022-08-03 Last modified: 2022-09-07 Method: ELECTRON MICROSCOPY (2.91 Å) Cite: Structural basis for cannabinoid-induced potentiation of alpha1-glycine receptors in lipid nanodiscs. Nat Commun, 13, 2022
7NFU	Crystal structure of C-terminally truncated Geobacillus thermoleovorans nucleoid occlusion protein Noc Descriptor: GLYCEROL, Nucleoid occlusion protein, SULFATE ION Authors: Jalal, A.S.B, Tran, N.T, Wu, L.J, Ramakrishnan, K, Rejzek, M, Stevenson, C.E.M, Lawson, D.M, Errington, J, Le, T.B.K. Deposit date: 2021-02-07 Release date: 2021-02-17 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (2.5 Å) Cite: CTP regulates membrane-binding activity of the nucleoid occlusion protein Noc. Mol.Cell, 81, 2021
5VQF	Crystal Structure of pro-TGF-beta 1 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Transforming growth factor beta-1, beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Zhao, B, Xu, S, Dong, X, Lu, C, Springer, T.A. Deposit date: 2017-05-08 Release date: 2017-11-15 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Prodomain-growth factor swapping in the structure of pro-TGF-beta 1. J. Biol. Chem., 293, 2018
4FM6	HIV-1 protease mutant V32I complexed with reaction intermediate Descriptor: CHLORIDE ION, GLYCEROL, HIV-1 protease, ... Authors: Shen, C.H, Weber, I.T. Deposit date: 2012-06-15 Release date: 2012-10-17 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Capturing the Reaction Pathway in Near-Atomic-Resolution Crystal Structures of HIV-1 Protease. Biochemistry, 51, 2012
3LI0	Crystal structure of the mutant R203A of orotidine 5'-monophosphate decarboxylase from Methanobacterium thermoautotrophicum complexed with inhibitor BMP Descriptor: 1-(5'-PHOSPHO-BETA-D-RIBOFURANOSYL)BARBITURIC ACID, Orotidine 5'-phosphate decarboxylase Authors: Fedorov, A.A, Fedorov, E.V, Wood, B.M, Gerlt, J.A, Almo, S.C. Deposit date: 2010-01-23 Release date: 2010-06-16 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Conformational changes in orotidine 5'-monophosphate decarboxylase: a structure-based explanation for how the 5'-phosphate group activates the enzyme. Biochemistry, 51, 2012
3CGR	X-ray structure containing the pseudouridylated U2 snRNA and intron branch site consensus sequences Descriptor: RNA (5'-R(*CP*GP*CP*AP*CP*UP*AP*AP*CP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*GP*(PSU)P*AP*GP*UP*GP*C)-3'), SULFATE ION Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.1 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
7NEN	Crystal structure of outer surface protein C (OspC) from Borrelia garinii Descriptor: Outer surface protein C Authors: Sliwiak, J, Bierwagen, P, Ruszkowski, M, Jaskolski, M, Urbanowicz, A. Deposit date: 2021-02-04 Release date: 2021-04-07 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Structural studies of outer surface proteins (OspC) from different Borrelia strains To Be Published
4FIS	THE MOLECULAR STRUCTURE OF WILD-TYPE AND A MUTANT FIS PROTEIN: RELATIONSHIP BETWEEN MUTATIONAL CHANGES AND RECOMBINATIONAL ENHANCER FUNCTION OR DNA BINDING Descriptor: FACTOR FOR INVERSION STIMULATION (FIS) Authors: Yuan, H.S, Finkel, S.E, Feng, J.-A, Johnson, R.C, Dickerson, R.E. Deposit date: 1991-08-12 Release date: 1993-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.3 Å) Cite: The molecular structure of wild-type and a mutant Fis protein: relationship between mutational changes and recombinational enhancer function or DNA binding. Proc.Natl.Acad.Sci.USA, 88, 1991
3UM1	Crystal structure of the Brox Bro1 domain in complex with the C-terminal tail of CHMP5 Descriptor: BRO1 domain-containing protein BROX, Charged multivesicular body protein 5, GLYCEROL Authors: Jiang, J.S, Mu, R.L, Xiao, T. Deposit date: 2011-11-11 Release date: 2012-04-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.708 Å) Cite: Two Distinct Binding Modes Define the Interaction of Brox with the C-Terminal Tails of CHMP5 and CHMP4B. Structure, 20, 2012
3LK9	DNA polymerase beta with a gapped DNA substrate and dTMP(CF2)P(CF2)P Descriptor: 5'-O-[(R)-{[(R)-[difluoro(phosphono)methyl](hydroxy)phosphoryl](difluoro)methyl}(hydroxy)phosphoryl]thymidine, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*CP*AP*GP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Zibinsky, M, Surya Prakash, G.K, Upton, T.G, Kashemirov, B.A, McKenna, C.E, Oertell, K, Goodman, M.F, Batra, V.K, Pedersen, L.C, Beard, W.A, Wilson, S.H. Deposit date: 2010-01-27 Release date: 2011-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Synthesis and biological evaluation of fluorinated deoxynucleotide analogs based on bis-(difluoromethylene)triphosphoric acid. Proc.Natl.Acad.Sci.USA, 107, 2010
6DHX	Structure of TipC2 from Streptococcus intermedius B196 Descriptor: SULFATE ION, TipC2 Authors: Bryant, D, Klein, T.A, Whitney, J.C. Deposit date: 2018-05-21 Release date: 2018-09-19 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Molecular Basis for Immunity Protein Recognition of a Type VII Secretion System Exported Antibacterial Toxin. J. Mol. Biol., 430, 2018
3CGQ	X-ray structure of a pseudouridine-containing yeast spliceosomal U2 snRNA-intron branch site duplex Descriptor: RNA (5'-R(*CP*GP*CP*UP*AP*CP*UP*AP*AP*CP*GP*CP*G)-3'), RNA (5'-R(*GP*CP*GP*CP*GP*(PSU)P*AP*GP*UP*AP*GP*C)-3'), SULFATE ION Authors: Lin, Y, Kielkopf, C.L. Deposit date: 2008-03-06 Release date: 2008-07-01 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.55 Å) Cite: X-ray structures of U2 snRNA-branchpoint duplexes containing conserved pseudouridines. Biochemistry, 47, 2008
6WQG	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J3 immobile Holliday junction Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*AP*CP*TP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-04-28 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.003 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WRJ	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J26 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*TP*TP*GP*AP*CP*AP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*A)-3'), DNA (5'-D(P*GP*GP*TP*CP*TP*GP*C)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-04-29 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.129 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WRA	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J34 immobile Holliday junction Descriptor: DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*AP*AP*GP*AP*CP*TP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3'), DNA (5'-D(P*AP*GP*TP*CP*T)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-04-29 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022
6WSO	Self-assembly of a 3D DNA crystal lattice (4x5 duplex version) containing the J8 immobile Holliday junction Descriptor: CACODYLATE ION, DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*CP*AP*GP*AP*CP*AP*CP*CP*AP*CP*TP*CP*A)-3'), DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*GP*G)-3'), ... Authors: Simmons, C.R, MacCulloch, T, Stephanopoulos, N, Yan, H. Deposit date: 2020-05-01 Release date: 2021-07-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.106 Å) Cite: The influence of Holliday junction sequence and dynamics on DNA crystal self-assembly. Nat Commun, 13, 2022

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