Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

2IAY
DownloadVisualize
BU of 2iay by Molmil
Crystal structure of a duf1831 family protein (lp2179) from lactobacillus plantarum at 1.20 A resolution
Descriptor: CHLORIDE ION, GLYCEROL, Hypothetical protein
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-09-08
Release date:2006-10-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Structure of LP2179, the first representative of Pfam family PF08866, suggests a new fold with a role in amino-acid metabolism.
Acta Crystallogr.,Sect.F, 66, 2010
9BJL
DownloadVisualize
BU of 9bjl by Molmil
Crystal structure of Influenza D virus Nucleoprotein (Oklahoma)
Descriptor: CHLORIDE ION, Nucleoprotein
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-04-25
Release date:2024-05-08
Method:X-RAY DIFFRACTION (2.43 Å)
Cite:Crystal structure of Influenza D virus Nucleoprotein (Oklahoma)
To be published
9B33
DownloadVisualize
BU of 9b33 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to one ConA dimer. Type II interface between GluK2 ligand-binding domain and ConA
Descriptor: CALCIUM ION, Concanavalin V, ZINC ION
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (4.07 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
5K1S
DownloadVisualize
BU of 5k1s by Molmil
crystal structure of AibC
Descriptor: Oxidoreductase, zinc-binding dehydrogenase family, ZINC ION
Authors:Bock, T, Mueller, R, Blankenfeldt, W.
Deposit date:2016-05-18
Release date:2016-08-10
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Crystal structure of AibC, a reductase involved in alternative de novo isovaleryl coenzyme A biosynthesis in Myxococcus xanthus.
Acta Crystallogr.,Sect.F, 72, 2016
9BBL
DownloadVisualize
BU of 9bbl by Molmil
THF filament generated from 4E-Tau(297-407) under neutral Mg2+ condition
Descriptor: Isoform Tau-F of Microtubule-associated protein tau
Authors:Duan, P, El Mammeri, N.
Deposit date:2024-04-06
Release date:2024-05-08
Last modified:2024-06-05
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Milligram-scale assembly and NMR fingerprint of tau fibrils adopting the Alzheimer's disease fold.
J.Biol.Chem., 300, 2024
5K3E
DownloadVisualize
BU of 5k3e by Molmil
Crystal Structure of the Fluoroacetate Dehalogenase RPA1163 - Asp110Asn/Glycolate - Cocrystallized
Descriptor: CHLORIDE ION, Fluoroacetate dehalogenase, GLYCOLIC ACID
Authors:Mehrabi, P, Kim, T.H, Prosser, S.R, Pai, E.F.
Deposit date:2016-05-19
Release date:2017-02-01
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:The role of dimer asymmetry and protomer dynamics in enzyme catalysis.
Science, 355, 2017
9BHR
DownloadVisualize
BU of 9bhr by Molmil
Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound
Descriptor: (4P)-N-[(1S)-3-amino-1-(3-chloro-4-fluorophenyl)-3-oxopropyl]-4-(4-chloro-2-fluorophenyl)-5-{(1E)-3-[(2-methoxyethyl)amino]-3-oxoprop-1-en-1-yl}-1H-pyrrole-3-carboxamide, DDB1- and CUL4-associated factor 1
Authors:kimani, S, Dong, A, Li, Y, Seitova, A, Al-Awar, R, Krausser, C, Wilson, B, Ackloo, S, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
Deposit date:2024-04-21
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.62 Å)
Cite:Crystal structure of the WDR domain of human DCAF1 in complex with OICR-40155 compound
To be published
9B94
DownloadVisualize
BU of 9b94 by Molmil
Cryo-EM structure of the E396A mutant of human TRPM4 in complex with calcium at 37 degrees Celsius
Descriptor: CALCIUM ION, Transient receptor potential cation channel subfamily M member 4
Authors:Hu, J, Lu, W, Du, J.
Deposit date:2024-04-01
Release date:2024-05-22
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
9BFT
DownloadVisualize
BU of 9bft by Molmil
Cryo-EM co-structure of AcrB with CU244
Descriptor: (2S)-1-{[(1R,5R)-3-azabicyclo[3.1.0]hexan-6-yl]amino}-3-(3,5-dichlorophenoxy)propan-2-ol, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Multidrug efflux pump subunit AcrB
Authors:Su, C.C.
Deposit date:2024-04-18
Release date:2024-05-08
Last modified:2025-05-21
Method:ELECTRON MICROSCOPY (2.44 Å)
Cite:Bacterial efflux pump modulators prevent bacterial growth in macrophages and under broth conditions that mimic the host environment.
mBio, 14, 2023
9B35
DownloadVisualize
BU of 9b35 by Molmil
Ligand-binding and transmembrane domains of kainate receptor GluK2 in the open state, a complex with agonist glutamate and positive allosteric modulator BPAM344
Descriptor: GLUTAMIC ACID, Glutamate receptor ionotropic, kainate 2
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-10-23
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
9BKJ
DownloadVisualize
BU of 9bkj by Molmil
Cholecystokinin 1 receptor (CCK1R) Y140A mutant, Gq chimera (mGsqi) complex
Descriptor: AMINO GROUP, Cholecystokinin receptor type A, Cholecystokinin-8, ...
Authors:Cary, B.P, Harikumar, K.G, Zhao, P, Desai, A.J, Mobbs, J.M, Toufaily, C, Furness, S.G.B, Christopoulos, A, Belousoff, M.J, Wootten, D, Sexton, P.M, Miller, L.J.
Deposit date:2024-04-29
Release date:2024-05-22
Last modified:2024-08-14
Method:ELECTRON MICROSCOPY (2.59 Å)
Cite:Cholesterol-dependent dynamic changes in the conformation of the type 1 cholecystokinin receptor affect ligand binding and G protein coupling.
Plos Biol., 22, 2024
9BFN
DownloadVisualize
BU of 9bfn by Molmil
Cryo-EM co-structure of AcrB with the CU232 efflux pump inhibitor
Descriptor: (2R)-1-(4-aminopiperidin-1-yl)-3-[3-(trifluoromethyl)phenoxy]propan-2-ol, 1,2-Distearoyl-sn-glycerophosphoethanolamine, Multidrug efflux pump subunit AcrB
Authors:Su, C.C.
Deposit date:2024-04-18
Release date:2024-05-08
Last modified:2025-05-28
Method:ELECTRON MICROSCOPY (2.71 Å)
Cite:Bacterial efflux pump modulators prevent bacterial growth in macrophages and under broth conditions that mimic the host environment.
mBio, 14, 2023
9BKY
DownloadVisualize
BU of 9bky by Molmil
Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound)
Descriptor: GLYCEROL, SULFATE ION, XYPPX repeat family protein
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-04-29
Release date:2024-05-08
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Crystal structure of a C2 domain from Trichomonas vaginalis (sulfate bound)
To be published
9B91
DownloadVisualize
BU of 9b91 by Molmil
Cryo-EM structure of the human TRPM4 channel subunit in complex with calcium and ATP at 37 degrees Celsius
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CALCIUM ION, Transient receptor potential cation channel subfamily M member 4
Authors:Hu, J, Lu, W, Du, J.
Deposit date:2024-04-01
Release date:2024-05-15
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.3 Å)
Cite:Physiological temperature drives TRPM4 ligand recognition and gating.
Nature, 630, 2024
1KRA
DownloadVisualize
BU of 1kra by Molmil
CRYSTAL STRUCTURE OF KLEBSIELLA AEROGENES UREASE, ITS APOENZYME AND TWO ACTIVE SITE MUTANTS
Descriptor: UREASE
Authors:Jabri, E, Karplus, P.A.
Deposit date:1995-06-20
Release date:1995-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structures of the Klebsiella aerogenes urease apoenzyme and two active-site mutants.
Biochemistry, 35, 1996
5JQM
DownloadVisualize
BU of 5jqm by Molmil
Crystal Structure of Phosphatidic acid Transporter Ups1/Mdm35 Void of Bound Phospholipid from Saccharomyces Cerevisiae at 1.5 Angstroms Resolution
Descriptor: Protein UPS1, mitochondrial,Mitochondrial distribution and morphology protein 35
Authors:Lu, J, Chan, K.C, Zhai, Y, Fan, J, Sun, F.
Deposit date:2016-05-05
Release date:2017-07-12
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Molecular mechanism of mitochondrial phosphatidate transfer by Ups1
Commun Biol, 2020
9B34
DownloadVisualize
BU of 9b34 by Molmil
Structure of concanavalin A (ConA) dimer from the open-state structure of kainate receptor GluK2 in complex with agonist glutamate and positive allosteric modulator BPAM344 bound to two ConA dimers. Type I interface between GluK2 ligand-binding domain and ConA
Descriptor: CALCIUM ION, Concanavalin A, ZINC ION
Authors:Nadezhdin, K.D, Gangwar, S.P, Sobolevsky, A.I.
Deposit date:2024-03-18
Release date:2024-05-22
Last modified:2024-06-26
Method:ELECTRON MICROSCOPY (3.58 Å)
Cite:Kainate receptor channel opening and gating mechanism.
Nature, 630, 2024
8HVC
DownloadVisualize
BU of 8hvc by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 1
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.58 Å)
Cite:Crystal Structure of Glycoside Hydrolase Family 20 Lacto- N -biosidase from Soil Bacterium Streptomyces sp. Strain 142.
J Appl Glycosci (1999), 72, 2025
9BKZ
DownloadVisualize
BU of 9bkz by Molmil
Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (CoA and ADP bound)
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, COENZYME A, ...
Authors:Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2024-04-29
Release date:2024-05-08
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Crystal Structure of Dephospho-CoA kinase from Klebsiella aerogenes (CoA and ADP bound)
To be published
9BUV
DownloadVisualize
BU of 9buv by Molmil
Crystal structure of Cry1Fa R226Q
Descriptor: Pesticidal crystal protein Cry1Fa
Authors:Poland, B.W, Kakani, K, Yamamoto, T.
Deposit date:2024-05-17
Release date:2024-05-29
Method:X-RAY DIFFRACTION (2.024 Å)
Cite:Crystal structure of Cry1Fa R226Q
To Be Published
9BE2
DownloadVisualize
BU of 9be2 by Molmil
Structure of the E. coli nucleic associated protein, YejK
Descriptor: Nucleoid-associated protein YejK
Authors:Schumacher, M.A.
Deposit date:2024-04-13
Release date:2024-05-15
Last modified:2024-07-24
Method:X-RAY DIFFRACTION (3.56 Å)
Cite:Structure of the E. coli nucleoid-associated protein YejK reveals a novel DNA binding clamp.
Nucleic Acids Res., 52, 2024
9B5O
DownloadVisualize
BU of 9b5o by Molmil
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from consensus
Descriptor: 4-aminobutanenitrile, ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ...
Authors:Kochanczyk, T, Lima, C.D.
Deposit date:2024-03-22
Release date:2024-06-05
Last modified:2024-09-25
Method:ELECTRON MICROSCOPY (3.19 Å)
Cite:Structural basis for transthiolation intermediates in the ubiquitin pathway.
Nature, 633, 2024
5JSL
DownloadVisualize
BU of 5jsl by Molmil
The L16F mutant of cytochrome c prime from Alcaligenes xylosoxidans: Ferrous form
Descriptor: ASCORBIC ACID, Cytochrome c', HEME C, ...
Authors:Kekilli, D, Strange, R.W, Hough, M.A.
Deposit date:2016-05-08
Release date:2017-03-08
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Engineering proximal vs. distal heme-NO coordination via dinitrosyl dynamics: implications for NO sensor design.
Chem Sci, 8, 2017
8HVD
DownloadVisualize
BU of 8hvd by Molmil
Crystal structure of lacto-N-biosidase StrLNBase from Streptomyces sp. strain 142, galacto-N-biose complex 2
Descriptor: Lacto-N-biosidase, beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-galactopyranose
Authors:Fushinobu, S, Yamada, C, Fujio, N.
Deposit date:2022-12-26
Release date:2023-12-27
Last modified:2025-07-09
Method:X-RAY DIFFRACTION (1.41 Å)
Cite:Crystal Structure of Glycoside Hydrolase Family 20 Lacto- N -biosidase from Soil Bacterium Streptomyces sp. Strain 142.
J Appl Glycosci (1999), 72, 2025
5JSO
DownloadVisualize
BU of 5jso by Molmil
Structures of DddQ from Ruegeria lac. Reveal Key Residues for Metal Binding and Catalysis - TRIS bound
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Dimethlysulfonioproprionate lyase DddQ, ...
Authors:Brummett, A.E, Dey, M.
Deposit date:2016-05-09
Release date:2017-02-22
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2 Å)
Cite:New Mechanistic Insight from Substrate- and Product-Bound Structures of the Metal-Dependent Dimethylsulfoniopropionate Lyase DddQ.
Biochemistry, 55, 2016

238582

數據於2025-07-09公開中

PDB statisticsPDBj update infoContact PDBjnumon