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6ZR4
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BU of 6zr4 by Molmil
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1
Descriptor: ACETIC ACID, CALCIUM ION, Fibrinogen C domain-containing protein 1, ...
Authors:Shrive, A.K, Greenhough, T.J, Williams, H.M.
Deposit date:2020-07-10
Release date:2021-07-21
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Crystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs
J.Biol.Chem., 2023
4Q4P
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BU of 4q4p by Molmil
tRNA-Guanine Transglycosylase (TGT) in Complex with 2-{[2-(PIPERIDIN-1-YL)ETHYL]AMINO}-3,5-DIHYDRO-8H-IMIDAZO[4,5-G]QUINAZOLIN-8-ONE
Descriptor: 2-{[2-(piperidin-1-yl)ethyl]amino}-3,5-dihydro-8H-imidazo[4,5-g]quinazolin-8-one, CHLORIDE ION, DIMETHYL SULFOXIDE, ...
Authors:Neeb, M, Heine, A, Klebe, G.
Deposit date:2014-04-15
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.539 Å)
Cite:Beyond Affinity: Enthalpy-Entropy Factorization Unravels Complexity of a Flat Structure-Activity Relationship for Inhibition of a tRNA-Modifying Enzyme.
J.Med.Chem., 57, 2014
5XDK
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BU of 5xdk by Molmil
Crystal structure of EGFR 696-1022 T790M in complex with CO-1686
Descriptor: Epidermal growth factor receptor, N-[3-[[2-[[4-(4-ethanoylpiperazin-1-yl)-2-methoxy-phenyl]amino]-5-(trifluoromethyl)pyrimidin-4-yl]amino]phenyl]prop-2-enamide
Authors:Yan, X.E, Yun, C.H.
Deposit date:2017-03-28
Release date:2017-12-13
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (2.346 Å)
Cite:Structural basis of mutant-selectivity and drug-resistance related to CO-1686.
Oncotarget, 8, 2017
9C5K
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BU of 9c5k by Molmil
Trypanosoma cruzi R19T/K20S/C64Y mutant beta-3-HBDH structure in complex with NADPH and malonate
Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Hydroxybutyrate dehydrogenase, ...
Authors:Hashimoto, H, Debler, E.W.
Deposit date:2024-06-06
Release date:2025-08-27
Method:X-RAY DIFFRACTION (1.79 Å)
Cite:Trypanosoma cruzi D-3-hydroxybutyrate dehydrogenase (HBDH) is NADP-dependent enzyme.
To Be Published
6ZR3
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BU of 6zr3 by Molmil
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N-acetyl-galactosamine-4-sulfate ligand bound
Descriptor: 2-acetamido-2-deoxy-4-O-sulfo-beta-D-galactopyranose, ACETIC ACID, CALCIUM ION, ...
Authors:Shrive, A.K, Greenhough, T.J, Williams, H.M.
Deposit date:2020-07-10
Release date:2021-07-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Crystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs
J.Biol.Chem., 2023
7KI3
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BU of 7ki3 by Molmil
Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA
Descriptor: BARIUM ION, HCV genotype 1a miR-122 site-1, Protein argonaute-2, ...
Authors:Gebert, L.F.R, MacRae, I.J.
Deposit date:2020-10-22
Release date:2021-10-06
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (3 Å)
Cite:A structured RNA motif locks Argonaute2:miR-122 onto the 5' end of the HCV genome.
Nat Commun, 12, 2021
6ZQX
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BU of 6zqx by Molmil
Crystal structure of tetrameric fibrinogen-like recognition domain of FIBCD1 with N,N'-diacetyl chitobiose ligand bound
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACETIC ACID, CALCIUM ION, ...
Authors:Shrive, A.K, Greenhough, T.J, Williams, H.M.
Deposit date:2020-07-10
Release date:2021-07-21
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.84 Å)
Cite:Crystal structures of human immune protein FIBCD1 suggest an extended binding site compatible with recognition of pathogen associated carbohydrate motifs
J.Biol.Chem., 2023
8R0D
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BU of 8r0d by Molmil
Crystal structure of Borneoldehydrogenase ancestor N39
Descriptor: 1,2-ETHANEDIOL, Borneoldehydrogenase, FORMIC ACID
Authors:Helmer, C.P.O, Dimos, N, Loll, B.
Deposit date:2023-10-31
Release date:2024-10-09
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Crystal structure of Borneoldehydrogenase N39
To Be Published
6X7A
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BU of 6x7a by Molmil
Crystal structure of acetyltransferase Eis from Mycobacterium tuberculosis in complex with inhibitor SGT572
Descriptor: 4-(4-cyclohexyl-3,4-dihydro-2~{H}-pyridin-1-yl)-1-(4-$l^{2}-fluoranylcyclohexa-1,3,5-trien-1-yl)butan-1-one, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Punetha, A, Garneau-Tsodikova, S, Tsodikov, O.V.
Deposit date:2020-05-29
Release date:2021-06-02
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.08 Å)
Cite:Structure-based design of haloperidol analogues as inhibitors of acetyltransferase Eis from Mycobacterium tuberculosis to overcome kanamycin resistance
Rsc Med Chem, 12, 2021
9C5I
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BU of 9c5i by Molmil
Trypanosoma cruzi beta-3-HBDH APO structure (C2 space group)
Descriptor: 1,2-ETHANEDIOL, Hydroxybutyrate dehydrogenase
Authors:Hashimoto, H, Debler, E.W.
Deposit date:2024-06-06
Release date:2025-08-27
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Trypanosoma cruzi D-3-hydroxybutyrate dehydrogenase (HBDH) is NADP-dependent enzyme.
To Be Published
8W9A
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BU of 8w9a by Molmil
CryoEM structure of human PI3K-alpha (P85/P110-H1047R) with QR-7909 binding at an allosteric site
Descriptor: 6-chloranyl-3-[[(1R)-1-[2-(1,3-dihydropyrrolo[3,4-c]pyridin-2-yl)-3,6-dimethyl-4-oxidanylidene-quinazolin-8-yl]ethyl]amino]pyridine-2-carboxylic acid, Phosphatidylinositol 3-kinase regulatory subunit alpha, Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform
Authors:Huang, X, Ren, X, Zhong, W.
Deposit date:2023-09-05
Release date:2024-04-17
Last modified:2024-07-24
Method:ELECTRON MICROSCOPY (2.7 Å)
Cite:Cryo-EM structures reveal two allosteric inhibition modes of PI3K alpha H1047R involving a re-shaping of the activation loop.
Structure, 32, 2024
8B1N
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BU of 8b1n by Molmil
Crystal structure of TrmD-Tm1570 from Calditerrivibrio nitroreducens in complex with S-adenosyl-L-methionine
Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ...
Authors:Kluza, A, Lewandowska, I, Augustyniak, R, Sulkowska, J.
Deposit date:2022-09-10
Release date:2022-09-28
Last modified:2024-07-03
Method:X-RAY DIFFRACTION (2 Å)
Cite:Are there double knots in proteins? Prediction and in vitro verification based on TrmD-Tm1570 fusion from C. nitroreducens.
Front Mol Biosci, 10, 2023
6DLV
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BU of 6dlv by Molmil
Cryo-EM of the GTP-bound human dynamin-1 polymer assembled on the membrane in the super constricted state
Descriptor: Dynamin-1
Authors:Kong, L, Wang, H, Fang, S, Canagarajah, B, Kehr, A.D, Rice, W.J, Hinshaw, J.E.
Deposit date:2018-06-02
Release date:2018-08-01
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (10.1 Å)
Cite:Cryo-EM of the dynamin polymer assembled on lipid membrane.
Nature, 560, 2018
4QHZ
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BU of 4qhz by Molmil
Crystal structure of a putative glycosyl hydrolase (BDI_3914) from Parabacteroides distasonis ATCC 8503 at 2.13 A resolution
Descriptor: 1,2-ETHANEDIOL, MAGNESIUM ION, putative glycosyl hydrolase
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2014-05-30
Release date:2014-07-30
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (2.13 Å)
Cite:Crystal structure of a putative glycosyl hydrolase (BDI_3914) from Parabacteroides distasonis ATCC 8503 at 2.13 A resolution
To be published
7YAS
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BU of 7yas by Molmil
HYDROXYNITRILE LYASE, LOW TEMPERATURE NATIVE STRUCTURE
Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, PROTEIN (HYDROXYNITRILE LYASE), ...
Authors:Zuegg, J, Wagner, U.G, Gugganig, M, Kratky, C.
Deposit date:1999-03-15
Release date:1999-10-13
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Three-dimensional structures of enzyme-substrate complexes of the hydroxynitrile lyase from Hevea brasiliensis.
Protein Sci., 8, 1999
6X7H
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BU of 6x7h by Molmil
Cyanovirin-N Mutation I34Y with Dimannose bound
Descriptor: Cyanovirin-N, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose
Authors:Fromme, R, Sharma, P, Ghirlanda, G.
Deposit date:2020-05-30
Release date:2021-06-02
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Design of novel cyanovirin-N variants by modulation of binding dynamics through distal mutations.
Elife, 11, 2022
9C5H
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BU of 9c5h by Molmil
Trypanosoma cruzi beta-3-HBDH structure in complex with NADPH and malonate
Descriptor: 1,2-ETHANEDIOL, DI(HYDROXYETHYL)ETHER, Hydroxybutyrate dehydrogenase, ...
Authors:Hashimoto, H, Debler, E.W.
Deposit date:2024-06-06
Release date:2025-08-27
Method:X-RAY DIFFRACTION (1.59 Å)
Cite:Trypanosoma cruzi D-3-hydroxybutyrate dehydrogenase (HBDH) is NADP-dependent enzyme.
To Be Published
4QAP
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BU of 4qap by Molmil
The second sphere residue T263 is important for function and activity of PTP1B through modulating WPD loop
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein phosphatase non-receptor type 1
Authors:Xiao, P, Wang, X, Wang, H.M, Fu, X.L, Cui, F.A, Yu, X, Bi, W.X, Sun, J.P.
Deposit date:2014-05-05
Release date:2015-02-11
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.903 Å)
Cite:The second-sphere residue T263 is important for the function and catalytic activity of PTP1B via interaction with the WPD-loop
Int.J.Biochem.Cell Biol., 57, 2014
4XVV
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BU of 4xvv by Molmil
Crystal structure of an Acid stress chaperone HdeB (KPN_03484) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.70 A resolution
Descriptor: Acid stress chaperone HdeB
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2015-01-28
Release date:2015-02-11
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Crystal structure of an Acid stress chaperone HdeB (KPN_03484) from Klebsiella pneumoniae subsp. pneumoniae MGH 78578 at 1.70 A resolution
To be published
7XVK
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BU of 7xvk by Molmil
Modularity of Phytophthora effectors enables host mimicry of a principal phosphatase
Descriptor: 1,2-ETHANEDIOL, RxLR effector protein PSR2, Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform
Authors:Wang, J, Wang, Y.
Deposit date:2022-05-24
Release date:2023-07-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Pathogen protein modularity enables elaborate mimicry of a host phosphatase.
Cell, 186, 2023
8U4F
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BU of 8u4f by Molmil
Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellohexaose
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Araujo, E.A, Polikarpov, I.
Deposit date:2023-09-10
Release date:2024-02-14
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.01 Å)
Cite:Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9.
Carbohydr Polym, 329, 2024
7L79
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BU of 7l79 by Molmil
Crystal structure of broadly HIV-1-neutralizing antibody VRC40.01
Descriptor: Heavy chain of VRC40.01, Light chain of VRC40.01, ZINC ION
Authors:Zhou, T, Kwong, P.D.
Deposit date:2020-12-27
Release date:2021-10-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.826 Å)
Cite:Crystal structure of broadly HIV-1-neutralizing antibody
Cell Rep, 2021
8FXB
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BU of 8fxb by Molmil
SARS-CoV-2 XBB.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Processed angiotensin-converting enzyme 2, S309 Heavy chain, ...
Authors:Park, Y.J, Seattle Structural Genomics Center for Infectious Disease (SSGCID), Veesler, D.
Deposit date:2023-01-24
Release date:2023-10-04
Last modified:2024-11-20
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Neutralization, effector function and immune imprinting of Omicron variants.
Nature, 621, 2023
7L77
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BU of 7l77 by Molmil
Crystal structure of broadly HIV-1-neutralizing antibody VRC33.01
Descriptor: Heavy chain of VRC 33.01, Light chain of VRC33.01
Authors:Zhou, T, Kwong, P.D.
Deposit date:2020-12-27
Release date:2021-10-27
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.543 Å)
Cite:Crystal structure of broadly HIV-1-neutralizing antibody
Cell Rep, 2021
8Z7C
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BU of 8z7c by Molmil
Structure of G9a in complex with compound 7i
Descriptor: 3,6,6-trimethyl-~{N}-[(2~{S})-1-[[4-(1-methylpiperidin-4-yl)oxyphenyl]amino]-1-oxidanylidene-hexan-2-yl]-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide, Histone-lysine N-methyltransferase EHMT2, SINEFUNGIN, ...
Authors:Niwa, H, Shirai, F, Sato, S, Nishigaya, Y, Ihara, K, Shirouzu, M, Umehara, T.
Deposit date:2024-04-20
Release date:2025-01-22
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structure-based development of novel substrate-type G9a inhibitors as epigenetic modulators for sickle cell disease treatment.
Bioorg.Med.Chem.Lett., 110, 2024

244693

數據於2025-11-12公開中

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