PDB: 13252 resultsInfo pagesStatus searchChemie searchBIRD

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3KS8	Crystal structure of Reston ebolavirus VP35 RNA binding domain in complex with 18bp dsRNA Descriptor: 5'-R(*AP*GP*AP*AP*GP*GP*AP*GP*GP*GP*AP*GP*GP*GP*AP*GP*GP*A)-3', 5'-R(*UP*CP*CP*UP*CP*CP*CP*UP*CP*CP*CP*UP*CP*CP*UP*UP*CP*U)-3', Polymerase cofactor VP35 Authors: Kimberlin, C.R, Bornholdt, Z.A, Li, S, Woods, V.L, Macrae, I.J, Saphire, E.O. Deposit date: 2009-11-20 Release date: 2010-01-12 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.401 Å) Cite: Ebolavirus VP35 uses a bimodal strategy to bind dsRNA for innate immune suppression. Proc.Natl.Acad.Sci.USA, 107, 2009
2ASJ	oxoG-modified Preinsertion Binary Complex Descriptor: 5'-D(*CP*TP*AP*AP*CP*(8OG)*CP*TP*AP*CP*CP*AP*TP*CP*CP*AP*AP*CP*C)-3', 5'-D(*GP*GP*TP*TP*GP*GP*AP*TP*GP*GP*TP*AP*(DDG))-3', CALCIUM ION, ... Authors: Rechkoblit, O, Malinina, L, Cheng, Y, Kuryavyi, V, Broyde, S, Geacintov, N.E, Patel, D.J. Deposit date: 2005-08-23 Release date: 2006-01-10 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Stepwise Translocation of Dpo4 Polymerase during Error-Free Bypass of an oxoG Lesion Plos Biol., 4, 2006
4QBT	Crystal structure of tyrosine bound human tyrosyl tRNA synthetase Descriptor: GLYCEROL, PHOSPHATE ION, POTASSIUM ION, ... Authors: Mathew, S, Schimmel, P. Deposit date: 2014-05-08 Release date: 2014-12-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A human tRNA synthetase is a potent PARP1-activating effector target for resveratrol. Nature, 519, 2014
4Q93	Crystal structure of resveratrol bound human tyrosyl tRNA synthetase Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ... Authors: Mathew, S, Schimmel, P. Deposit date: 2014-04-28 Release date: 2014-12-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: A human tRNA synthetase is a potent PARP1-activating effector target for resveratrol. Nature, 519, 2014
2L9J	hRSV M2-1 core domain structure Descriptor: Matrix protein 2-1 Authors: Dubosclard, V, Blondot, M, Bontems, F, Eleouet, J, Sizun, C. Deposit date: 2011-02-12 Release date: 2012-02-15 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure and functional analysis of the RNA- and viral phosphoprotein-binding domain of respiratory syncytial virus M2-1 protein. Plos Pathog., 8, 2012
5J0R	Binary complex crystal structure of DNA polymerase Beta with C:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.001 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0X	Binary complex crystal structure of DNA polymerase Beta with T:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0O	Binary complex crystal structure of DNA polymerase Beta with A:A mismatch at the primer terminus Descriptor: DNA (5'-D(*CP*CP*GP*AP*CP*AP*AP*CP*GP*CP*AP*TP*CP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*GP*AP*TP*GP*CP*GP*A)-3'), DNA (5'-D(P*GP*TP*CP*GP*G)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0W	Binary complex crystal structure of DNA polymerase Beta with T:C mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
8GAP	Structure of LARP7 protein p65-telomerase RNA complex in telomerase Descriptor: Telomerase La-related protein p65, Telomerase RNA, Telomerase associated protein p50, ... Authors: Wang, Y, He, Y, Wang, Y, Yang, Y, Singh, M, Eichhorn, C.D, Zhou, Z.H, Feigon, J. Deposit date: 2023-02-23 Release date: 2023-06-28 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Structure of LARP7 Protein p65-telomerase RNA Complex in Telomerase Revealed by Cryo-EM and NMR. J.Mol.Biol., 435, 2023
5J0Y	Binary complex crystal structure of DNA polymerase Beta with T:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0P	Binary complex crystal structure of DNA polymerase Beta with A:C mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0S	Binary complex crystal structure of DNA polymerase Beta with C:T mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0U	Binary complex crystal structure of DNA polymerase Beta with G:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
4XQ8	Human DNA polymerase lambda- MgdATP binary complex and complex with 6 paired DNA Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), ... Authors: Tsai, M.D, Liu, M.S. Deposit date: 2015-01-19 Release date: 2016-02-24 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.798 Å) Cite: Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
5J0Q	Binary complex crystal structure of DNA polymerase Beta with A:G mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
5J0T	Binary complex crystal structure of DNA polymerase Beta with G:A mismatch at the primer terminus Descriptor: DNA polymerase beta, Downstream Primer Strand, Primer Strand, ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2016-03-28 Release date: 2016-10-26 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structures of DNA Polymerase Mispaired DNA Termini Transitioning to Pre-catalytic Complexes Support an Induced-Fit Fidelity Mechanism. Structure, 24, 2016
2PFQ	Manganese promotes catalysis in a DNA polymerase lambda-DNA crystal Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, Downstream Primer, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
4H61	Structure of the Schizosaccharomyces pombe Mediator subunit Med6 Descriptor: Mediator of RNA polymerase II transcription subunit 6 Authors: Lariviere, L, Plaschka, C, Seizl, M, Wenzeck, L, Kurth, F, Cramer, P. Deposit date: 2012-09-19 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structure of the Mediator head module. Nature, 492, 2012
2PFO	DNA Polymerase lambda in complex with DNA and dUPNPP Descriptor: 1,2-ETHANEDIOL, 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase lambda, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
1FW5	SOLUTION STRUCTURE OF MEMBRANE BINDING PEPTIDE OF SEMLIKI FOREST VIRUS MRNA CAPPING ENZYME NSP1 Descriptor: NONSTRUCTURAL PROTEIN NSP1 Authors: Lampio, A, Kilpelinen, I, Pesonen, S, Karhi, K, Auvinen, P, Somerharju, P, Kriinen, L. Deposit date: 2000-09-21 Release date: 2001-09-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Membrane binding mechanism of an RNA virus-capping enzyme. J.Biol.Chem., 275, 2001
2PFN	Na in the active site of DNA Polymerase lambda Descriptor: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE, DNA polymerase lambda, Downstream Primer, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
3IYB	Poliovirus early RNA-release intermediate Descriptor: Genome polyprotein, Precursor polyprotein, VP1 core Authors: Levy, H.C, Bostina, M, Filman, D.J, Hogle, J.M. Deposit date: 2009-07-21 Release date: 2010-03-16 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (10 Å) Cite: Catching a virus in the act of RNA release: a novel poliovirus uncoating intermediate characterized by cryo-electron microscopy. J.Virol., 84, 2010
2PFP	DNA Polymerase lambda in complex with DNA and dCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA polymerase lambda, Downstream Primer, ... Authors: Garcia-Diaz, M, Bebenek, K, Krahn, J.M, Pedersen, L.C, Kunkel, T.A. Deposit date: 2007-04-05 Release date: 2007-05-15 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Role of the catalytic metal during polymerization by DNA polymerase lambda. DNA Repair, 6, 2007
3FBI	Structure of the Mediator submodule Med7N/31 Descriptor: Mediator of RNA polymerase II transcription subunit 31, Mediator of RNA polymerase II transcription subunit 7 Authors: Koschubs, T, Seizl, M, Lariviere, L, Kurth, F, Baumli, S, Martin, D.E, Cramer, P. Deposit date: 2008-11-19 Release date: 2008-12-16 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Identification, structure, and functional requirement of the Mediator submodule Med7N/31 Embo J., 28, 2009

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