PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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6HBT	The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with arcaine Descriptor: 1-(4-carbamimidamidobutyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SULFATE ION Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-13 Release date: 2019-02-20 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structure-guided design of a high-affinity ligand for a riboswitch. Rna, 25, 2019
3VAL	Structure of U2AF65 variant with BrU5C1 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3'), SULFATE ION, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
7MLW	Burkholderia sp. TJI49 Guanidine-I riboswitch Descriptor: GUANIDINE, Guanidine-I riboswitch, MAGNESIUM ION, ... Authors: Trachman, R.J, Ferre-D'Amare, A.R. Deposit date: 2021-04-29 Release date: 2022-01-12 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.7 Å) Cite: An uncommon [K + (Mg 2+ ) 2 ] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch. Rna, 27, 2021
6HC5	The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with audouine Descriptor: 1-(5-carbamimidamidopentyl)guanidine, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2018-08-14 Release date: 2019-02-20 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.413 Å) Cite: Structure-guided design of a high-affinity ligand for a riboswitch. Rna, 25, 2019
1MNB	BIV TAT PEPTIDE (RESIDUES 68-81), NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: BIV TAR RNA, BIV TAT PEPTIDE Authors: Puglisi, J.D, Chen, L, Blanchard, S, Frankel, A.D. Deposit date: 1996-07-25 Release date: 1997-01-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a bovine immunodeficiency virus Tat-TAR peptide-RNA complex. Science, 270, 1995
4F1N	Crystal structure of Kluyveromyces polysporus Argonaute with a guide RNA Descriptor: KpAGO, RNA 5'-R(P*UP*AP*AP*AP*AP*AP*AP*AP*A)-3' Authors: Nakanishi, K, Weinberg, D.E, Bartel, D.P, Patel, D.J. Deposit date: 2012-05-07 Release date: 2012-06-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.187 Å) Cite: Structure of yeast Argonaute with guide RNA. Nature, 486, 2012
2EC0	RNA-dependent RNA polymerase of foot-and-mouth disease virus in complex with a template-primer RNA and ATP Descriptor: 5'-R(*GP*GP*GP*CP*CP*CP*A)-3', 5'-R(P*AP*UP*GP*GP*GP*CP*CP*C)-3', MAGNESIUM ION, ... Authors: Ferrer-Orta, C, Arias, A, Perez-Luque, R, Escarmis, C, Domingo, E, Verdaguer, N. Deposit date: 2007-02-09 Release date: 2007-06-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Sequential structures provide insights into the fidelity of RNA replication Proc.Natl.Acad.Sci.Usa, 104, 2007
1ILE	ISOLEUCYL-TRNA SYNTHETASE Descriptor: ISOLEUCYL-TRNA SYNTHETASE, ZINC ION Authors: Nureki, O, Vassylyev, D.G, Tateno, M, Shimada, A, Nakama, T, Fukai, S, Konno, M, Schimmel, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 1998-02-24 Release date: 1999-04-13 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Enzyme structure with two catalytic sites for double-sieve selection of substrate. Science, 280, 1998
3VAH	Structure of U2AF65 variant with BrU3C4 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(P*UP*UP*(BRU)P*CP*UP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
4N0L	Methanopyrus kandleri Csm3 crystal structure Descriptor: Predicted component of a thermophile-specific DNA repair system, contains a RAMP domain, ZINC ION Authors: Hrle, A, Su, A.A, Ebert, J, Benda, C, Conti, E, Randau, L. Deposit date: 2013-10-02 Release date: 2013-11-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3. Rna Biol., 10, 2013
8XRM	RNA polymerase II elongation complex with DSIF, SPT6, and ELOF1 transcribing genomic DNA extracted from human nuclei Descriptor: DNA, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... Authors: Kujirai, T, Kato, J, Yamamoto, K, Hirai, S, Negishi, L, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2024-01-07 Release date: 2025-05-07 Last modified: 2025-06-11 Method: ELECTRON MICROSCOPY (3.13 Å) Cite: Multiple structures of RNA polymerase II isolated from human nuclei by ChIP-CryoEM analysis. Nat Commun, 16, 2025
8XSO	RNA polymerase II elongation complex transcribing genomic DNA extracted from human nuclei Descriptor: DNA, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11-a, ... Authors: Kujirai, T, Kato, J, Yamamoto, K, Hirai, S, Negishi, L, Ogasawara, M, Takizawa, Y, Kurumizaka, H. Deposit date: 2024-01-09 Release date: 2025-05-07 Last modified: 2025-06-11 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Multiple structures of RNA polymerase II isolated from human nuclei by ChIP-CryoEM analysis. Nat Commun, 16, 2025
2MKI	Solution structure of tandem RRM domains of cytoplasmic polyadenylation element binding protein 4 (CPEB4) in complex with RNA Descriptor: Cytoplasmic polyadenylation element-binding protein 4, RNA (5'-R(*CP*UP*UP*UP*A)-3') Authors: Afroz, T, Skrisovska, L, Belloc, E, Boixet, J.G, Mendez, R, Allain, F.H.-T. Deposit date: 2014-02-07 Release date: 2014-07-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins Genes Dev., 28, 2014
6DPB	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 8 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.324 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
3VAK	Structure of U2AF65 variant with BrU5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (2.17 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
6DPA	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 4 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.489 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
3VAF	Structure of U2AF65 variant with BrU3 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*(BRU)P*UP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.49 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAM	Structure of U2AF65 variant with BrU5C2 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*CP*UP*UP*(BRU)P*UP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.4 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3PD4	Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with glycyl-3'-aminoadenosine Descriptor: 3'-deoxy-3'-(glycylamino)adenosine, Threonyl-tRNA synthetase Authors: Hussain, T, Kamarthapu, V, Kruparani, S.P, Sankaranarayanan, R. Deposit date: 2010-10-22 Release date: 2010-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Mechanistic insights into cognate substrate discrimination during proofreading in translation Proc.Natl.Acad.Sci.USA, 2010
3PD3	Crystal structure of the editing domain of threonyl-tRNA synthetase from Pyrococcus abyssi in complex with threonyl-3'-aminoadenosine Descriptor: 3'-deoxy-3'-(L-threonylamino)adenosine, Threonyl-tRNA synthetase Authors: Hussain, T, Kamarthapu, V, Kruparani, S.P, Sankaranarayanan, R. Deposit date: 2010-10-22 Release date: 2010-12-08 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.86 Å) Cite: Mechanistic insights into cognate substrate discrimination during proofreading in translation Proc.Natl.Acad.Sci.USA, 2010
3VAJ	Structure of U2AF65 variant with BrU5C6 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*UP*UP*UP*UP*(BRU)P*CP*U)-3'), GLYCEROL, ... Authors: Jenkins, J.L, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.9 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
3VAI	Structure of U2AF65 variant with BrU3C5 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA 5'-D(*UP*UP*(BRU)P*UP*CP*UP*U)-3', GLYCEROL, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.2 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
6DPF	Crystal Structure of Bacillus Halodurans Ribonuclease H1 in Complex with an RNA/DNA Hybrid: Reaction in 40 mM Mn2+ and 200 mM K+ for 40 s at 21 C Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*CP*GP*AP*TP*GP*T)-3'), GLYCEROL, ... Authors: Samara, N.L, Yang, W. Deposit date: 2018-06-09 Release date: 2018-08-15 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Cation trafficking propels RNA hydrolysis. Nat. Struct. Mol. Biol., 25, 2018
9J6Y	Lactobacillus salivarius ROOL RNA hexamer Descriptor: MAGNESIUM ION, RNA (550-MER) Authors: Wang, L, Xie, J.H, Shang, S.T, Su, Z.M. Deposit date: 2024-08-17 Release date: 2025-03-19 Last modified: 2025-05-14 Method: ELECTRON MICROSCOPY (3.25 Å) Cite: Cryo-EM reveals mechanisms of natural RNA multivalency. Science, 388, 2025
4EYA	Crystal Structure of a Plectonemic RNA Supercoil Descriptor: GLYCEROL, N utilization substance protein B homolog, RNA (5'-R(*GP*GP*CP*UP*CP*CP*UP*UP*GP*GP*CP*A)-3'), ... Authors: Stagno, J.R, Ji, X. Deposit date: 2012-05-01 Release date: 2012-06-20 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Crystal structure of a plectonemic RNA supercoil. Nat Commun, 3, 2012

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