PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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1LC6	Solution Structure of the U6 Intramolecular Stem-loop RNA Descriptor: U6 Intramolecular Stem-loop RNA Authors: Huppler, A, Nikstad, L.J, Allmann, A.M, Brow, D.A, Butcher, S.E. Deposit date: 2002-04-05 Release date: 2002-05-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Metal binding and base ionization in the U6 RNA intramolecular stem-loop structure. Nat.Struct.Biol., 9, 2002
3HYF	Crystal structure of HIV-1 RNase H p15 with engineered E. coli loop and active site inhibitor Descriptor: 2-(3,4-dichlorobenzyl)-5,6-dihydroxypyrimidine-4-carboxylic acid, ACETATE ION, GLYCEROL, ... Authors: Lansdon, E.B, Kirschberg, T.A. Deposit date: 2009-06-22 Release date: 2009-10-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.7 Å) Cite: RNase H active site inhibitors of human immunodeficiency virus type 1 reverse transcriptase: design, biochemical activity, and structural information. J.Med.Chem., 52, 2009
247D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3') Authors: Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. Deposit date: 1996-02-02 Release date: 1996-03-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
248D	CRYSTAL STRUCTURES OF AN A-FORM DUPLEX WITH SINGLE-ADENOSINE BULGES AND A CONFORMATIONAL BASIS FOR SITE SPECIFIC RNA SELF-CLEAVAGE Descriptor: DNA/RNA (5'-R(*GP*CP*GP*)-D(*AP*TP*AP*TP*AP*)-R(*CP*GP*C)-3'), ORTHORHOMBIC, SPERMINE Authors: Portmann, S, Grimm, S, Workman, C, Usman, N, Egli, M. Deposit date: 1996-02-02 Release date: 1996-03-08 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Crystal structures of an A-form duplex with single-adenosine bulges and a conformational basis for site-specific RNA self-cleavage. Chem.Biol., 3, 1996
2MKI	Solution structure of tandem RRM domains of cytoplasmic polyadenylation element binding protein 4 (CPEB4) in complex with RNA Descriptor: Cytoplasmic polyadenylation element-binding protein 4, RNA (5'-R(*CP*UP*UP*UP*A)-3') Authors: Afroz, T, Skrisovska, L, Belloc, E, Boixet, J.G, Mendez, R, Allain, F.H.-T. Deposit date: 2014-02-07 Release date: 2014-07-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins Genes Dev., 28, 2014
2RQJ	Quadruplex structure of an RNA aptamer against bovine prion protein Descriptor: RNA (5'-R(*GP*GP*AP*GP*GP*AP*GP*GP*AP*GP*GP*A)-3') Authors: Katahira, M, Mashima, T, Matsugami, A, Nishikawa, F, Nishikawa, S. Deposit date: 2009-07-18 Release date: 2009-11-17 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Unique quadruplex structure and interaction of an RNA aptamer against bovine prion protein Nucleic Acids Res., 37, 2009
2MKK	Structural model of tandem RRM domains of cytoplasmic polyadenylation element binding protein 1 (CPEB1) in complex with RNA Descriptor: Cytoplasmic polyadenylation element-binding protein 1, RNA (5'-R(*UP*UP*UP*UP*A)-3') Authors: Afroz, T, Skrisovska, L, Belloc, E, Boixet, J.G, Mendez, R, Allain, F.H.-T. Deposit date: 2014-02-07 Release date: 2014-07-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A fly trap mechanism provides sequence-specific RNA recognition by CPEB proteins Genes Dev., 28, 2014
1TRA	RESTRAINED REFINEMENT OF THE MONOCLINIC FORM OF YEAST PHENYLALANINE TRANSFER RNA. TEMPERATURE FACTORS AND DYNAMICS, COORDINATED WATERS, AND BASE-PAIR PROPELLER TWIST ANGLES Descriptor: MAGNESIUM ION, TRNAPHE Authors: Westhof, E, Sundaralingam, M. Deposit date: 1986-05-16 Release date: 1986-07-14 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3 Å) Cite: Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles. Biochemistry, 25, 1986
6H9X	Klebsiella pneumoniae Seryl-tRNA Synthetase in Complex with the Intermediate Analog 5'-O-(N-(L-Seryl)-Sulfamoyl)Adenosine Descriptor: 1,2-ETHANEDIOL, 5'-O-(N-(L-SERYL)-SULFAMOYL)ADENOSINE, CALCIUM ION, ... Authors: Pang, L, De Graef, S, Strelkov, S.V, Weeks, S.D. Deposit date: 2018-08-06 Release date: 2019-05-15 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Acylated sulfonamide adenosines as potent inhibitors of the adenylate-forming enzyme superfamily. Eur.J.Med.Chem., 174, 2019
1ZIF	GAAA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*AP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
1ZIG	GAGA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*AP*GP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
1ZIH	GCAA RNA TETRALOOP, NMR, 10 STRUCTURES Descriptor: RNA (5'-R(*GP*GP*GP*CP*GP*CP*AP*AP*GP*CP*CP*U)-3') Authors: Jucker, F.M, Heus, H.A, Yip, P.F, Moors, E, Pardi, A. Deposit date: 1996-07-27 Release date: 1997-03-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: A network of heterogeneous hydrogen bonds in GNRA tetraloops. J.Mol.Biol., 264, 1996
4C7O	The structural basis of FtsY recruitment and GTPase activation by SRP RNA Descriptor: GUANOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, SIGNAL RECOGNITION PARTICLE PROTEIN, ... Authors: Voigts-Hoffmann, F, Schmitz, N, Shen, K, Shan, S.O, Ataide, S.F, Ban, N. Deposit date: 2013-09-23 Release date: 2013-11-20 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The Structural Basis of Ftsy Recruitment and Gtpase Activation by Srp RNA Mol.Cell, 52, 2013
2QTX	Crystal structure of an Hfq-like protein from Methanococcus jannaschii Descriptor: Uncharacterized protein MJ1435 Authors: Nielsen, J.S, Boggild, A, Andersen, C.B.F, Nielsen, G, Boysen, A, Brodersen, D.E, Valentin-Hansen, P. Deposit date: 2007-08-03 Release date: 2007-11-06 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: An Hfq-like protein in archaea: Crystal structure and functional characterization of the Sm protein from Methanococcus jannaschii. Rna, 13, 2007
1YMO	Solution structure of the P2b-P3 pseudoknot from human telomerase RNA Descriptor: Telomerase RNA P2b-P3 pseudoknot Authors: Theimer, C.A, Blois, C.A, Feigon, J. Deposit date: 2005-01-21 Release date: 2005-03-15 Last modified: 2023-11-29 Method: SOLUTION NMR Cite: Structure of the human telomerase RNA pseudoknot reveals conserved tertiary interactions essential for function Mol.Cell, 17, 2005
6MN8	Crystal Structure of Prolyl-tRNA Synthetase from Onchocerca volvulus with bound Halofuginone and nucleotide Descriptor: 7-bromo-6-chloro-3-{3-[(2R,3S)-3-hydroxypiperidin-2-yl]-2-oxopropyl}quinazolin-4(3H)-one, ADENOSINE MONOPHOSPHATE, GLYCINE, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2018-10-01 Release date: 2018-10-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Crystal Structure of Prolyl-tRNA Synthetase from Onchocerca volvulus with bound Halofuginone and nucleotide To Be Published
8AXP	Neisseria gonorrhoeae peptidyl-tRNA hydrolase complexed with an XChem hit. Descriptor: N-[4-(2-amino-1,3-thiazol-4-yl)phenyl]acetamide, Peptidyl-tRNA hydrolase, SULFATE ION Authors: Roe, S.M, Fearon, D. Deposit date: 2022-08-31 Release date: 2022-11-09 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Synthesis of a Thiazole Library via an Iridium-Catalyzed Sulfur Ylide Insertion Reaction. Org.Lett., 24, 2022
1XJR	The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome Descriptor: MAGNESIUM ION, s2m RNA Authors: Robertson, M.P, Igel, H, Baertsch, R, Haussler, D, Ares Jr, M, Scott, W.G. Deposit date: 2004-09-24 Release date: 2005-02-01 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.7 Å) Cite: The structure of a rigorously conserved RNA element within the SARS virus genome Plos Biol., 3, 2005
6ZK7	Crystal Structure of human PYROXD1/FAD complex Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 Authors: Meinhart, A, Asanovic, I, Martinez, J, Clausen, T. Deposit date: 2020-06-30 Release date: 2021-05-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3.2 Å) Cite: The oxidoreductase PYROXD1 uses NAD(P) + as an antioxidant to sustain tRNA ligase activity in pre-tRNA splicing and unfolded protein response. Mol.Cell, 81, 2021
4V35	The Structure of A-PGS from Pseudomonas aeruginosa Descriptor: ACETATE ION, ALANYL-TRNA-DEPENDENT L-ALANYL- PHOPHATIDYLGLYCEROL SYNTHASE, CALCIUM ION, ... Authors: Krausze, J, Hebecker, S, Hasenkampf, T, Heinz, D.W, Moser, J. Deposit date: 2014-10-16 Release date: 2015-08-19 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structures of Two Bacterial Resistance Factors Mediating tRNA-Dependent Aminoacylation of Phosphatidylglycerol with Lysine or Alanine. Proc.Natl.Acad.Sci.USA, 112, 2015
8BU8	Double-motif Single-stranded Paranemic Crossover RNA Triangle (2PXT) Descriptor: RNA (354-MER) Authors: Sampedro, N, Andersen, E.S, McRae, E.K.S. Deposit date: 2022-11-30 Release date: 2024-01-24 Method: ELECTRON MICROSCOPY (6.56 Å) Cite: An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small, 19, 2023
7ZOG	Crystal structure of Cryptosporidium parvum -Plasmodium falciparum mutant lysyl tRNA synthetase in complex with inhibitor Descriptor: 8-[[4-[2-[2-[2-[2-[(azanylidene-$l^{4}-azanylidene)amino]ethoxy]ethoxy]ethoxy]ethylcarbamoyl]phenyl]sulfonylamino]-~{N}-(cyclohexylmethyl)-6-fluoranyl-4-oxidanylidene-chromene-2-carboxamide, GLYCEROL, LYSINE, ... Authors: Dawson, A, Wyllie, S. Deposit date: 2022-04-25 Release date: 2022-09-07 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Toolkit of Approaches To Support Target-Focused Drug Discovery for Plasmodium falciparum Lysyl tRNA Synthetase. Acs Infect Dis., 8, 2022
4YCW	Crystal structure of cladosporin in complex with plasmodium like human lysyl-tRNA synthetase mutant Descriptor: Aminoacyl tRNA synthase complex-interacting multifunctional protein 2, LYSINE, Lysine--tRNA ligase, ... Authors: Fang, P, Wang, J, Guo, M. Deposit date: 2015-02-20 Release date: 2015-06-10 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural Basis for Specific Inhibition of tRNA Synthetase by ATP Competitive Inhibitor Chem.Biol., 22, 2015
8BTZ	Single-stranded Paranemic Crossover RNA Triangle (PXT) Descriptor: RNA Paranemic croosover triangle (PXT) Authors: Sampedro, N, McRae, E.K.S, Andersen, E.S. Deposit date: 2022-11-30 Release date: 2022-12-28 Last modified: 2023-04-05 Method: ELECTRON MICROSCOPY (5.39 Å) Cite: An RNA Paranemic Crossover Triangle as A 3D Module for Cotranscriptional Nanoassembly. Small, 19, 2023
7WFX	EVAA-KlAte1 Descriptor: Arginyltransferase, ZINC ION Authors: Kim, M.K, Kim, B.H, Oh, S.-J, Song, H.K. Deposit date: 2021-12-27 Release date: 2022-09-14 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Crystal structure of the Ate1 arginyl-tRNA-protein transferase and arginylation of N-degron substrates. Proc.Natl.Acad.Sci.USA, 119, 2022

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