PDB: 5515 resultsInfo pagesStatus searchChemie searchBIRD

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6AWM	PawL-Derived Peptide PLP-4 Descriptor: GLY-LEU-LEU-GLY-ILE-THR-ASP Authors: Fisher, M, Mylne, J.S, Howard, M.J. Deposit date: 2017-09-05 Release date: 2018-03-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch. Plant Direct, 2, 2018
6C4Y	Cross-alpha Amyloid-like Structure alphaAmG Descriptor: Cross-alpha Amyloid-like Structure alphaAmG Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6AWK	PawL-Derived Peptide PLP-12 Descriptor: PLP-12 Authors: Fisher, M, Mylne, J.S, Howard, M.J. Deposit date: 2017-09-05 Release date: 2018-03-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch. Plant Direct, 2, 2018
6AZG	PawL-Derived Peptide PLP-10 (cis conformer) Descriptor: GLY-SER-PRO-LEU-PHE-ASP Authors: Fisher, M, Mylne, J.S, Howard, M.J. Deposit date: 2017-09-11 Release date: 2018-03-07 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch. Plant Direct, 2, 2018
6C9K	Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B Authors: Gonen, S, Liu, Y, Yeates, T.O, Gonen, T. Deposit date: 2018-01-26 Release date: 2018-03-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.49 Å) Cite: Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6C4X	Cross-alpha Amyloid-like Structure alphaAmmem Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ZINC ION, cross-alpha amyloid-like membrane peptide alpha-AmMEM Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.55 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6C4Z	Cross-alpha Amyloid-like Structure alphaAmG - low resolution Descriptor: Cross-alpha Amyloid-like Structure alphaAmG - low resolution Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6C52	Cross-alpha Amyloid-like Structure alphaTet Descriptor: Cross-alpha Amyloid-like Structure alphaTet, GLYCEROL Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2020-01-01 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6C51	Cross-alpha Amyloid-like Structure alphaAmL Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, Cross-alpha Amyloid-like Structure alphaAmL, PHOSPHATE ION Authors: Liu, L, Zhang, S.Q. Deposit date: 2018-01-13 Release date: 2018-08-15 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2 Å) Cite: Designed peptides that assemble into cross-alpha amyloid-like structures. Nat. Chem. Biol., 14, 2018
6C9I	Single-Particle reconstruction of DARP14 - A designed protein scaffold displaying ~17kDa DARPin proteins - Scaffold Descriptor: DARP14 - Subunit A with DARPin, DARP14 - Subunit B Authors: Gonen, S, Liu, Y, Yeates, T.O, Gonen, T. Deposit date: 2018-01-26 Release date: 2018-03-21 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (3.09 Å) Cite: Near-atomic cryo-EM imaging of a small protein displayed on a designed scaffolding system. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
7OBI	Consensus tetratricopeptide repeat protein type RV4 Descriptor: CTPR-rv4, PHOSPHATE ION Authors: Eapen, R.S, Perez-Riba, A, Fischer, G, Itzhaki, L.S, Hyvonen, M. Deposit date: 2021-04-22 Release date: 2022-02-23 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (3 Å) Cite: Unraveling the Mechanics of a Repeat-Protein Nanospring: From Folding of Individual Repeats to Fluctuations of the Superhelix. Acs Nano, 16, 2022
5OOY	Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme Descriptor: DARPin VHAH-1, Lysozyme C Authors: Hogan, B.J, Fischer, G, Houlihan, G, Edmond, S, Huovinen, T.T.K, Hollfelder, F, Hyvonen, M. Deposit date: 2017-08-09 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Designed Ankyrin Repeat Protein (DARPin) VHAH-1 in complex with Lysozyme To be published
8B1X	Solution NMR structure of the single alpha helix peptide (P3-7)2 Descriptor: P3-7_2 Authors: Escobedo, A, Coles, M, Diercks, T, Garcia, J, Millet, O, Salvatella, X. Deposit date: 2022-09-12 Release date: 2023-01-25 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: A glutamine-based single alpha-helix scaffold to target globular proteins. Nat Commun, 13, 2022
5OOU	Designed Ankyrin Repeat Protein (DARPin) YTRL-1 selected by directed evolution against Lysozyme Descriptor: DARPin YTRL-1 Authors: Fischer, G, Hogan, B.J, Houlihan, G, Edmond, S, Huovinen, T.T.K, Hollfelder, F, Hyvonen, M. Deposit date: 2017-08-08 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.104 Å) Cite: Designed Ankyrin Repeat Protein (DARPin) YTRL-1 selected by directed evolution against Lysozyme To be published
5OP1	Designed Ankyrin Repeat Protein (DARPin) A4 in complex with Lysozyme Descriptor: CHLORIDE ION, DARPin A4, Lysozyme C Authors: Fischer, G, Hogan, B.J, Houlihan, G, Edmond, S, Huovinen, T.T.K, Hollfelder, F, Hyvonen, M. Deposit date: 2017-08-09 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.284 Å) Cite: Designed Ankyrin Repeat Protein (DARPin) A4 in complex with Lysozyme To be published
5OOV	Designed Ankyrin Repeat Protein (DARPin) ETVD-1 in complex with Lysozyme Descriptor: DARPin ETVD-1, Lysozyme C Authors: Houlihan, G, Fischer, G, Hogan, B.J, Edmond, S, Huovinen, T.T.K, Hollfelder, F, Hyvonen, M. Deposit date: 2017-08-08 Release date: 2018-08-29 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.365 Å) Cite: Designed Ankyrin Repeat Protein (DARPin) ETVD-1 in complex with Lysozyme To be published
5ORM	Crystal structure of designed cPPR-Telo1 Descriptor: cPPR-Telo1 Authors: Spahr, H, Rackham, O. Deposit date: 2017-08-16 Release date: 2018-06-20 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins. Nat Commun, 9, 2018
7XGE	Crystal structure of MCL-1 in complex with computationally designed inhibitor protein Descriptor: BCL-xL and MCL-1 dual binder 2, Induced myeloid leukemia cell differentiation protein Mcl-1 Authors: Oh, B.-H, Kim, S. Deposit date: 2022-04-04 Release date: 2022-07-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.38 Å) Cite: Computational design of an apoptogenic protein that binds BCL-xL and MCL-1 simultaneously and potently. Comput Struct Biotechnol J, 20, 2022
7XGG	Crystal structure of BCL-xL in complex with computationally designed inhibitor protein Descriptor: BCL-xL and MCL-1 dual inhibitor, Bcl-2-like protein 1 Authors: Oh, B.-H, Kim, S. Deposit date: 2022-04-04 Release date: 2022-07-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Computational design of an apoptogenic protein that binds BCL-xL and MCL-1 simultaneously and potently. Comput Struct Biotechnol J, 20, 2022
7XGF	Crystal structure of BCL-xL in complex with computationally designed inhibitor protein Descriptor: BCL-xL, BCL-xL and MCL-1 dual inhibitor 2 Authors: Oh, B.-H, Kim, S. Deposit date: 2022-04-04 Release date: 2022-07-20 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Computational design of an apoptogenic protein that binds BCL-xL and MCL-1 simultaneously and potently. Comput Struct Biotechnol J, 20, 2022
5OOS	Designed Ankyrin Repeat Protein (DARPin) YTRL-2 selected by directed evolution against Lysozyme Descriptor: CHLORIDE ION, DARPin YTRL-2, NONAETHYLENE GLYCOL Authors: Hogan, B.J, Fischer, G, Houlihan, G, Edmond, S, Huovinen, T.T.K, Hollfelder, F, Hyvonen, M. Deposit date: 2017-08-08 Release date: 2018-08-29 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Designed Ankyrin Repeat Protein (DARPin) YTRL-2 selected by directed evolution against Lysozyme To be published
5ORQ	Crystal structure of designed cPPR-Telo1 in complex with ssDNA Descriptor: DNA (5'-D(P*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), cPPR-Telo1 Authors: Spahr, H, Rackham, O. Deposit date: 2017-08-16 Release date: 2018-06-20 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Modular ssDNA binding and inhibition of telomerase activity by designer PPR proteins. Nat Commun, 9, 2018
8BL9	Crystal Structure of Sam0.7 Descriptor: Sam0.7 Authors: Maksymenko, K, ElGamacy, M, Hartmann, M.D. Deposit date: 2022-11-09 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Crystal Structure of Sam0.7 To Be Published
8BL5	Crystal Structure of Sam0.2 Descriptor: Sam0.2 Authors: Maksymenko, K, ElGamacy, M, Hartmann, M.D. Deposit date: 2022-11-09 Release date: 2024-05-22 Method: X-RAY DIFFRACTION (2.65 Å) Cite: Crystal Structure of Sam0.2 To Be Published
7OY9	Crystal structure of GMP reductase from mycobacterium smegmatis. Descriptor: Guanosine 5'-monophosphate reductase Authors: Dolezal, M, Klima, M, Pichova, I. Deposit date: 2021-06-24 Release date: 2022-04-27 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The mycobacterial guaB1 gene encodes a guanosine 5'-monophosphate reductase with a cystathionine-beta-synthase domain. Febs J., 289, 2022

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