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1FHK	NMR STRUCTURE OF THE 690 LOOP OF 16 S RRNA OF E. COLI Descriptor: RNA (5'-R(*GP*GP*CP*GP*GP*UP*GP*AP*AP*AP*UP*GP*CP*C)-3') Authors: Morosyuk, S.V, Cunningham, P.R, SantaLucia Jr, J. Deposit date: 2000-08-01 Release date: 2001-03-21 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure and function of the conserved 690 hairpin in Escherichia coli 16 S ribosomal RNA. II. NMR solution structure. J.Mol.Biol., 307, 2001
1N53	SOLUTION STRUCTURE OF B. SUBTILIS T BOX ANTITERMINATOR RNA Descriptor: RNA (5'-R(*GP*AP*GP*GP*GP*UP*GP*GP*AP*AP*CP*CP*GP*CP*GP*C)-3'), RNA (5'-R(*GP*CP*GP*UP*CP*CP*CP*UP*C)-3') Authors: Gerdeman, M.S, Henkin, T.M, Hines, J.V. Deposit date: 2002-11-04 Release date: 2003-04-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution Structure of the Bacillus subtilis T-box Antiterminator RNA: Seven Nucleotide Bulge Characterized by Stacking and Flexibility J.Mol.Biol., 326, 2003
6QV4	Crystal structure of the Ski2 RNA-helicase Brr2 from Chaetomium thermophilum bound to ATP-gamma-S Descriptor: ACETATE ION, MANGANESE (II) ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ... Authors: Absmeier, E, Santos, K.F, Wahl, M.C. Deposit date: 2019-03-01 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Molecular Mechanism Underlying Inhibition of Intrinsic ATPase Activity in a Ski2-like RNA Helicase. Structure, 28, 2020
6L5N	Crystal structure of human DEAD-box RNA helicase DDX21 at post-unwound state Descriptor: MAGNESIUM ION, Nucleolar RNA helicase 2, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Chen, Z.J, Hu, X.J, Zhou, Z, Li, J.X. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2020-08-12 Method: X-RAY DIFFRACTION (2.242 Å) Cite: Structural Basis of Human Helicase DDX21 in RNA Binding, Unwinding, and Antiviral Signal Activation. Adv Sci, 7, 2020
6L1W	Zinc-finger Antiviral Protein (ZAP) bound to RNA Descriptor: RNA (5'-R(*CP*GP*UP*CP*GP*U)-3'), ZINC ION, Zinc finger CCCH-type antiviral protein 1 Authors: Luo, X, Wang, X, Gao, Y, Zhu, J, Liu, S, Gao, G, Gao, P. Deposit date: 2019-09-30 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.194 Å) Cite: Molecular Mechanism of RNA Recognition by Zinc-Finger Antiviral Protein. Cell Rep, 30, 2020
7S7B	Human Nuclear exosome targeting (NEXT) complex homodimer bound to RNA (substrate 1) Descriptor: Exosome RNA helicase MTR4, RNA (46-MER), RNA-binding protein 7, ... Authors: Puno, M.R, Lima, C.D. Deposit date: 2021-09-15 Release date: 2022-06-15 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (4.06 Å) Cite: Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
7S7C	Human Nuclear Exosome Targeting (NEXT) complex bound to RNA (substrate 2) Descriptor: Exosome RNA helicase MTR4, RNA (30-MER), RNA-binding protein 7, ... Authors: Puno, M.R, Lima, C.D. Deposit date: 2021-09-15 Release date: 2022-06-15 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.62 Å) Cite: Structural basis for RNA surveillance by the human nuclear exosome targeting (NEXT) complex. Cell, 185, 2022
6E4P	Structure of the T. brucei RRM domain in complex with RNA Descriptor: RNA (5'-R(P*UP*UP*UP*U)-3'), RNA-binding protein, putative Authors: Schumacher, M.A. Deposit date: 2018-07-18 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.949 Å) Cite: The RRM of the kRNA-editing protein TbRGG2 uses multiple surfaces to bind and remodel RNA. Nucleic Acids Res., 47, 2019
8I44	Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3AU-uucg Authors: Ichijo, R, Kamimura, T, Kawai, G. Deposit date: 2023-01-18 Release date: 2023-03-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues. Front Mol Biosci, 10, 2023
8I45	Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3GC-uucg Authors: Ichijo, R, Kamimura, T, Kawai, G. Deposit date: 2023-01-18 Release date: 2023-03-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues. Front Mol Biosci, 10, 2023
8I43	Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-C-3GC-uucg Authors: Ichijo, R, Kamimura, T, Kawai, G. Deposit date: 2023-01-18 Release date: 2023-03-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues. Front Mol Biosci, 10, 2023
8I46	Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues Descriptor: 1-cyclopropyl-N-[3-(dimethylamino)propyl]-7-(4-ethylpiperazin-1-yl)-6-fluoranyl-4-oxidanylidene-quinoline-3-carboxamide, RNA-G-3AU-uucg Authors: Ichijo, R, Kamimura, T, Kawai, G. Deposit date: 2023-01-18 Release date: 2023-03-29 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Interaction between a fluoroquinolone derivative KG022 and RNAs: Effect of base pairs 3' adjacent to the bulged residues. Front Mol Biosci, 10, 2023
8B9I	Cryo-EM structure of MLE in complex with ADP:AlF4 and UUC RNA Descriptor: ADENOSINE-5'-DIPHOSPHATE, Dosage compensation regulator, MAGNESIUM ION, ... Authors: Jagtap, P.K.A, Hennig, J. Deposit date: 2022-10-06 Release date: 2023-10-18 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.95 Å) Cite: Structural basis of RNA-induced autoregulation of the DExH-type RNA helicase maleless. Mol.Cell, 83, 2023
7SHX	A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript, NMR, minimized average structure Descriptor: RNA (94-MER) Authors: Sharma, S, Varani, G. Deposit date: 2021-10-11 Release date: 2022-10-19 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A functional SNP regulates E-cadherin expression by dynamically remodeling the 3D structure of a promoter-associated non-coding RNA transcript. Nucleic Acids Res., 50, 2022
5LWJ	Solution NMR structure of the GTP binding Class II RNA aptamer-ligand-complex containing a protonated adenine nucleotide with a highly shifted pKa. Descriptor: GTP Class II RNA (34-MER), GUANOSINE-5'-TRIPHOSPHATE Authors: Wolter, A.C, Weickhmann, A.K, Nasiri, A.H, Hantke, K, Ohlenschlaeger, O, Wunderlich, C.H, Kreutz, C, Duchardt-Ferner, E, Woehnert, J. Deposit date: 2016-09-17 Release date: 2016-12-14 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A Stably Protonated Adenine Nucleotide with a Highly Shifted pKa Value Stabilizes the Tertiary Structure of a GTP-Binding RNA Aptamer. Angew. Chem. Int. Ed. Engl., 56, 2017
7KEF	RNA polymerase II elongation complex with unnatural base dTPT3, rNaM in swing state Descriptor: (1S)-1,4-anhydro-1-(3-methoxynaphthalen-2-yl)-5-O-phosphono-D-ribitol, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Oh, J, Wang, D. Deposit date: 2020-10-10 Release date: 2021-06-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.89 Å) Cite: Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nat.Chem.Biol., 17, 2021
7KED	RNA polymerase II elongation complex with unnatural base dTPT3 Descriptor: DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, DNA-directed RNA polymerase II subunit RPB2, ... Authors: Oh, J, Wang, W, Wang, D. Deposit date: 2020-10-10 Release date: 2021-06-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nat.Chem.Biol., 17, 2021
7KEE	RNA polymerase II elongation complex with unnatural base dTPT3, rNaMTP bound to E-site Descriptor: (1S)-1,4-anhydro-5-O-[(R)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-1-(3-methoxynaphthalen-2-yl)-D-ribitol, DNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerase II subunit RPB11, ... Authors: Oh, J, Wang, D. Deposit date: 2020-10-10 Release date: 2021-06-23 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.45 Å) Cite: Transcriptional processing of an unnatural base pair by eukaryotic RNA polymerase II. Nat.Chem.Biol., 17, 2021
4U34	Crystal Structures of RNA Duplexes Containing 2-thio-Uridine Descriptor: RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*(SUR)P*CP*C-3') Authors: Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W. Deposit date: 2014-07-18 Release date: 2014-08-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. J.Am.Chem.Soc., 136, 2014
4U35	Crystal Structures of RNA Duplexes Containing 2-thio-Uridine Descriptor: RNA (5'-R(*GP*GP*UP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*(SUR)P*CP*C-3') Authors: Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W. Deposit date: 2014-07-18 Release date: 2014-08-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. J.Am.Chem.Soc., 136, 2014
4U37	Native 7mer-RNA duplex Descriptor: RNA (5'-R(*GP*GP*AP*GP*CP*UP*A)-3'), RNA (5'-R(*UP*AP*GP*CP*UP*CP*C)-3') Authors: Sheng, J, Larsen, A, Heuberger, B, Blain, J.C, Szostak, J.W. Deposit date: 2014-07-18 Release date: 2014-08-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal Structure Studies of RNA Duplexes Containing s(2)U:A and s(2)U:U Base Pairs. J.Am.Chem.Soc., 136, 2014
7UJ1	Crystal structure of PSF-RNA complex Descriptor: RNA (30-MER), Splicing factor, proline- and glutamine-rich Authors: Sachpatzidis, A, Wang, J, Konigsberg, W.H. Deposit date: 2022-03-30 Release date: 2022-09-28 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Insight into the Tumor Suppression Mechanism from the Structure of Human Polypyrimidine Splicing Factor (PSF/SFPQ) Complexed with a 30mer RNA from Murine Virus-like 30S Transcript-1. Biochemistry, 61, 2022
7AEA	Cryo-EM structure of human RNA Polymerase III elongation complex 2 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021
7AE1	Cryo-EM structure of human RNA Polymerase III elongation complex 1 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021
7AE3	Cryo-EM structure of human RNA Polymerase III elongation complex 3 Descriptor: DNA-directed RNA polymerase III subunit RPC1, DNA-directed RNA polymerase III subunit RPC10, DNA-directed RNA polymerase III subunit RPC2, ... Authors: Girbig, M, Misiaszek, A.D, Vorlaender, M.K, Mueller, C.W. Deposit date: 2020-09-17 Release date: 2021-02-03 Last modified: 2024-05-01 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Cryo-EM structures of human RNA polymerase III in its unbound and transcribing states. Nat.Struct.Mol.Biol., 28, 2021

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