PDB: 79225 resultsInfo pagesStatus searchChemie searchBIRD

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8SSF	Minimal protein-only/RNA-free Ribonuclease P from Hydrogenobacter thermophilus Descriptor: RNA-free ribonuclease P, SULFATE ION Authors: Mendoza, J, Mallik, L, Wilhelm, C.A, Koutmos, M. Deposit date: 2023-05-08 Release date: 2023-10-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Bacterial RNA-free RNase P: Structural and functional characterization of multiple oligomeric forms of a minimal protein-only ribonuclease P. J.Biol.Chem., 299, 2023
4BBS	Structure of an initially transcribing RNA polymerase II-TFIIB complex Descriptor: 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
5LTJ	Crystal structure of the Prp43-ADP-BeF3 complex (in orthorhombic space group) Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Tauchert, M.J, Ficner, R. Deposit date: 2016-09-06 Release date: 2017-01-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural insights into the mechanism of the DEAH-box RNA helicase Prp43. Elife, 6, 2017
1B75	SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L25 FROM ESCHERICHIA COLI Descriptor: PROTEIN (50S RIBOSOMAL PROTEIN L25) Authors: Stoldt, M, Woehnert, J, Goerlach, M, Brown, L.R. Deposit date: 1999-01-27 Release date: 2000-01-26 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases. EMBO J., 17, 1998
8SSG	Minimal protein-only/RNA-free Ribonuclease P from Hydrogenobacter thermophilus Descriptor: RNA-free ribonuclease P Authors: Mendoza, J, Wilhelm, C.A, Mallik, L, Koutmos, M. Deposit date: 2023-05-08 Release date: 2023-10-18 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Bacterial RNA-free RNase P: Structural and functional characterization of multiple oligomeric forms of a minimal protein-only ribonuclease P. J.Biol.Chem., 299, 2023
5LTK	Crystal structure of the Prp43-ADP-BeF3 complex (in hexagonal space group) Descriptor: ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ... Authors: Tauchert, M.J, Ficner, R. Deposit date: 2016-09-06 Release date: 2017-01-25 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (3.241 Å) Cite: Structural insights into the mechanism of the DEAH-box RNA helicase Prp43. Elife, 6, 2017
2KM8	Interdomain RRM packing contributes to RNA recognition in the rna15, hrp1, anchor RNA 3' processing ternary complex Descriptor: 5'-R(P*UP*AP*UP*AP*UP*AP*UP*AP*AP*UP*AP*AP*U)-3', Nuclear polyadenylated RNA-binding protein 4, mRNA 3'-end-processing protein RNA15 Authors: Leeper, T.C, Varani, G. Deposit date: 2009-07-24 Release date: 2010-07-28 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: Novel Protein-Protein Contacts Facilitate mRNA 3'-Processing Signal Recognition by Rna15 and Hrp1. J.Mol.Biol., 401, 2010
3HOW	Complete RNA polymerase II elongation complex III with a T-U mismatch and a frayed RNA 3'-uridine Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
8UTJ	E. coli 70S ribosome with unmodified lys-tRNAPro(GGG) bound to slippery P-site CCC-C codon in the 0 frame Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S11, ... Authors: Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. Deposit date: 2023-10-31 Release date: 2025-07-09 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
8UXB	E. coli 70S ribosome with unmodified P/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. Deposit date: 2023-11-09 Release date: 2025-07-09 Method: ELECTRON MICROSCOPY (2.9 Å) Cite: An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
8UZ3	E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. Deposit date: 2023-11-14 Release date: 2025-07-09 Method: ELECTRON MICROSCOPY (3.2 Å) Cite: An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
1RC7	Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', Ribonuclease III Authors: Blaszczyk, J, Gan, J, Ji, X. Deposit date: 2003-11-03 Release date: 2004-03-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure, 12, 2004
8UZG	E. coli 70S ribosome with unmodified e*/E-tRNAPro(GGG) bound to slippery P-site CCC-C codon Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S10, ... Authors: Kimbrough, E.M, Dunham, C.M, Nguyen, H.A. Deposit date: 2023-11-15 Release date: 2025-07-09 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: An RNA modification prevents extended codon-anticodon interactions from facilitating +1 frameshifting Nat Commun, 2025
3HOU	Complete RNA polymerase II elongation complex I with a T-U mismatch Descriptor: 5'-D(*A*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*CP*A*AP*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*U*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*U)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
3HOZ	Complete RNA polymerase II elongation complex IV with a T-U mismatch and a frayed RNA 3'-guanine Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*CP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*G)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.65 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
7OG5	RNA-free Ribonuclease P from Halorhodospira halophila Descriptor: RNA-free ribonuclease P Authors: Altegoer, F, Bange, G. Deposit date: 2021-05-06 Release date: 2021-07-07 Last modified: 2024-07-10 Method: ELECTRON MICROSCOPY (3.37 Å) Cite: Structure and mechanistic features of the prokaryotic minimal RNase P. Elife, 10, 2021
5M9Z	Second zinc-binding domain from yeast Pcf11 Descriptor: Protein PCF11, ZINC ION Authors: Mackereth, C. Deposit date: 2016-11-02 Release date: 2017-08-02 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing. Nucleic Acids Res., 45, 2017
6JVX	Crystal structure of RBM38 in complex with RNA Descriptor: RNA (5'-R(*UP*GP*UP*GP*UP*GP*UP*GP*UP*GP*UP*G)-3'), RNA-binding protein 38, SULFATE ION Authors: Qian, K, Li, M, Wang, J, Zhang, M, Wang, M. Deposit date: 2019-04-17 Release date: 2020-01-01 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.301 Å) Cite: Structural basis for mRNA recognition by human RBM38. Biochem.J., 477, 2020
3HOY	Complete RNA polymerase II elongation complex VI Descriptor: 5'-D(*CP*CP*AP*AP*GP*CP*TP*CP*AP*AP*G*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*TP*AP*CP*TP*AP*GP*TP*AP*CP*TP*GP*CP*C)-3', 5'-D(*CP*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*AP*GP*TP*AP*AP*AP*CP*TP*AP*GP*TP*AP*TP*T*GP*AP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP*T)-3', 5'-R(*UP*AP*UP*AP*UP*GP*CP*A*UP*AP*AP*AP*GP*AP*CP*CP*AP*GP*GP*A)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
3HOX	Complete RNA polymerase II elongation complex V Descriptor: 5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-D(*AP*GP*CP*TP*C*AP*AP*GP*TP*AP*GP*TP*TP*AP*AP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*U*CP*AP*AP*CP*CP*AP*GP*GP*CP*UP*U)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (3.65 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
6QPG	Influenza A virus Polymerase Heterotrimer A/nt/60/1968(H3N2) in complex with Nanobody NB8205 Descriptor: Nanobody NB8205, Polymerase acidic protein, Polymerase basic protein 2, ... Authors: Fan, H.T, Keown, J.R, Fodor, E, Grimes, J.M. Deposit date: 2019-02-13 Release date: 2019-09-04 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (3.34 Å) Cite: Structures of influenza A virus RNA polymerase offer insight into viral genome replication. Nature, 573, 2019
3HOV	Complete RNA polymerase II elongation complex II Descriptor: 5'-D(*AP*GP*CP*TP*CP*AP*A*GP*TP*AP*GP*TP*TP*AP*TP*GP*CP*CP*(BRU)P*GP*GP*TP*CP*AP*TP*T)-3', 5'-D(*T*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3', 5'-R(*UP*GP*CP*AP*UP*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*CP*A)-3', ... Authors: Sydow, J.F, Brueckner, F, Cheung, A.C.M, Damsma, G.E, Dengl, S, Lehmann, E, Vassylyev, D, Cramer, P. Deposit date: 2009-06-03 Release date: 2009-07-28 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structural basis of transcription: mismatch-specific fidelity mechanisms and paused RNA polymerase II with frayed RNA. Mol.Cell, 34, 2009
6KUR	Structure of influenza D virus polymerase bound to vRNA promoter in Mode B conformation (Class B1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUK	Structure of influenza D virus polymerase bound to vRNA promoter in mode A conformation (class A1) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2025-07-02 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019
6KUP	Structure of influenza D virus polymerase bound to vRNA promoter in Mode A conformation(Class A2) Descriptor: 3'-vRNA, 5'-vRNA, Polymerase 3, ... Authors: Peng, Q, Peng, R, Qi, J, Gao, G.F, Shi, Y. Deposit date: 2019-09-02 Release date: 2019-10-02 Last modified: 2025-06-25 Method: ELECTRON MICROSCOPY (4.3 Å) Cite: Structural insight into RNA synthesis by influenza D polymerase. Nat Microbiol, 4, 2019

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