PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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3AL0	Crystal structure of the glutamine transamidosome from Thermotoga maritima in the glutamylation state. Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Glutamyl-tRNA(Gln) amidotransferase subunit A, Glutamyl-tRNA(Gln) amidotransferase subunit C,Linker,Glutamate--tRNA ligase 2, ... Authors: Ito, T, Yokoyama, S. Deposit date: 2010-07-19 Release date: 2010-09-29 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (3.368 Å) Cite: Two enzymes bound to one transfer RNA assume alternative conformations for consecutive reactions. Nature, 467, 2010
8IPM	The structure of human mitochondrial methyltransferase METTL15 with h44_RNA, RBFA and SAM Descriptor: 12S rRNA N4-methylcytidine (m4C) methyltransferase, Putative ribosome-binding factor A, mitochondrial, ... Authors: Lv, M.Q, Zhou, W.W. Deposit date: 2023-03-14 Release date: 2024-01-03 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural insights into the specific recognition of mitochondrial ribosome-binding factor hsRBFA and 12 S rRNA by methyltransferase METTL15. Cell Discov, 10, 2024
1B75	SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN L25 FROM ESCHERICHIA COLI Descriptor: PROTEIN (50S RIBOSOMAL PROTEIN L25) Authors: Stoldt, M, Woehnert, J, Goerlach, M, Brown, L.R. Deposit date: 1999-01-27 Release date: 2000-01-26 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: The NMR structure of Escherichia coli ribosomal protein L25 shows homology to general stress proteins and glutaminyl-tRNA synthetases. EMBO J., 17, 1998
4BBR	Structure of RNA polymerase II-TFIIB complex Descriptor: DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2, ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.4 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
4BBS	Structure of an initially transcribing RNA polymerase II-TFIIB complex Descriptor: 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP*CP*TP *AP*TP*GP*AP*TP*AP*TP*TP*TP*TP*TP*AP*TP)-3', 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*CP*TP)-3', 5'-R(*AP*UP*AP*UP*CP*AP)-3', ... Authors: Sainsbury, S, Niesser, J, Cramer, P. Deposit date: 2012-09-27 Release date: 2012-11-14 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structure and Function of the Initially Transcribing RNA Polymerase II-TFIIB Complex Nature, 493, 2013
4LCK	Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA Descriptor: MAGNESIUM ION, Ribosomal protein YbxF, STRONTIUM ION, ... Authors: Zhang, J, Ferre-D'Amare, A.R. Deposit date: 2013-06-21 Release date: 2013-07-31 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Co-crystal structure of a T-box riboswitch stem I domain in complex with its cognate tRNA. Nature, 500, 2013
1Y1W	Complete RNA Polymerase II elongation complex Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*GP*CP*CP*TP*GP*GP*TP*CP*AP*T)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... Authors: Cramer, P, Kettenberger, H, Armache, K.-J. Deposit date: 2004-11-19 Release date: 2005-01-04 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (4 Å) Cite: Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
1Y77	Complete RNA Polymerase II elongation complex with substrate analogue GMPCPP Descriptor: 5'-D(*AP*AP*GP*TP*AP*CP*T)-3', 5'-D(P*AP*GP*TP*AP*CP*TP*TP*AP*CP*T*CP*GP*CP*CP*TP*GP*GP*TP*CP*TP*G)-3', 5'-R(*AP*AP*GP*AP*CP*CP*AP*GP*GP*C)-3', ... Authors: Kettenberger, H, Armache, K.-J, Cramer, P. Deposit date: 2004-12-08 Release date: 2005-01-04 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (4.5 Å) Cite: Complete RNA Polymerase II Elongation Complex Structure and Its Interactions with NTP and TFIIS Mol.Cell, 16, 2004
4UV3	Structure of the curli transport lipoprotein CsgG in its membrane- bound conformation Descriptor: CURLI PRODUCTION ASSEMBLY/TRANSPORT COMPONENT CSGG Authors: Goyal, P, Krasteva, P.V, Gerven, N.V, Gubellini, F, Broeck, I.V.D, Troupiotis-Tsailaki, A, Jonckheere, W, Pehau-Arnaudet, G, Pinkner, J.S, Chapman, M.R, Hultgren, S.J, Howorka, S, Fronzes, R, Remaut, H. Deposit date: 2014-08-04 Release date: 2014-09-24 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.59 Å) Cite: Structural and Mechanistic Insights Into the Bacterial Amyloid Secretion Channel Csgg. Nature, 516, 2014
3IZ4	Modified E. coli tmRNA in the resume state with the tRNA-like domain in the ribosomal P site interacting with the SmpB Descriptor: Modified E. coli transfer-messenger RNA, SsrA-binding protein Authors: Hashem, Y, Fu, J, Frank, J. Deposit date: 2010-09-21 Release date: 2010-10-20 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (13.6 Å) Cite: Visualizing the transfer-messenger RNA as the ribosome resumes translation. Embo J., 29, 2010
1RC7	Crystal structure of RNase III Mutant E110K from Aquifex Aeolicus complexed with ds-RNA at 2.15 Angstrom Resolution Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-R(*GP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3', Ribonuclease III Authors: Blaszczyk, J, Gan, J, Ji, X. Deposit date: 2003-11-03 Release date: 2004-03-30 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Noncatalytic Assembly of Ribonuclease III with Double-Stranded RNA. Structure, 12, 2004
6KOO	Mycobacterium tuberculosis initial transcription complex comprising sigma H and 5'-OH RNA of 7 nt Descriptor: DNA (5'-D(*TP*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*GP*AP*GP*GP*GP*TP*G)-3'), DNA (5'-D(*TP*TP*GP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*A)-3'), DNA-directed RNA polymerase subunit alpha, ... Authors: Li, L, Zhang, Y. Deposit date: 2019-08-12 Release date: 2020-03-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.8 Å) Cite: RNA extension drives a stepwise displacement of an initiation-factor structural module in initial transcription. Proc.Natl.Acad.Sci.USA, 117, 2020
6N3D	Structure of HIV Tat-specific factor 1 U2AF Homology Motif (APO-State) Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Loerch, S, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.13 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
6N3E	Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to U2AF ligand motif 4 Descriptor: FORMIC ACID, GLYCEROL, HIV Tat-specific factor 1, ... Authors: Loerch, S, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.893 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
6TB7	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP) Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2019-11-01 Release date: 2020-09-30 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch. Rna, 26, 2020
1XMQ	Crystal Structure of t6A37-ASLLysUUU AAA-mRNA Bound to the Decoding Center Descriptor: 16s ribosomal RNA, 30S Ribosomal Protein S10, 30S Ribosomal Protein S11, ... Authors: Murphy, F.V, Ramakrishnan, V, Malkiewicz, A, Agris, P.F. Deposit date: 2004-10-04 Release date: 2004-12-14 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (3 Å) Cite: The role of modifications in codon discrimination by tRNA(Lys)(UUU). Nat.Struct.Mol.Biol., 11, 2004
6N3F	Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to SF3b1 ULM5 Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, HIV Tat-specific factor 1, ... Authors: Leach, J.R, Jenkins, J.L, Kielkopf, C.L. Deposit date: 2018-11-15 Release date: 2019-01-02 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.099 Å) Cite: The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface. J. Biol. Chem., 294, 2019
6BU9	Drosophila Dicer-2 bound to blunt dsRNA Descriptor: Dicer-2, isoform A, RNA (5'-R(*AP*CP*UP*AP*CP*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*C)-3'), ... Authors: Shen, P.S, Sinha, N.K, Bass, B.L. Deposit date: 2017-12-09 Release date: 2017-12-27 Last modified: 2024-03-13 Method: ELECTRON MICROSCOPY (6.8 Å) Cite: Dicer uses distinct modules for recognizing dsRNA termini. Science, 359, 2018
5BTM	Crystal structure of AUUCU repeating RNA that causes spinocerebellar ataxia type 10 (SCA10) Descriptor: MAGNESIUM ION, RNA (55-mer), SODIUM ION Authors: Park, H. Deposit date: 2015-06-03 Release date: 2015-07-15 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.778 Å) Cite: Crystallographic and Computational Analyses of AUUCU Repeating RNA That Causes Spinocerebellar Ataxia Type 10 (SCA10). Biochemistry, 54, 2015
4XHA	Crystal structure of Thosea asigna virus RNA-dependent RNA polymerase (RdRP) complexed with Lu3+ Descriptor: GLYCEROL, LUTETIUM (III) ION, RNA-dependent RNA polymerase, ... Authors: Ferrero, D.S, Buxaderas, M, Rodriguez, J.F, Verdaguer, N. Deposit date: 2015-01-05 Release date: 2015-11-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3 Å) Cite: The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog., 11, 2015
7ZKI	Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex Descriptor: MAGNESIUM ION, METHIONINE, Met-tRNAiMet, ... Authors: Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. Deposit date: 2022-04-13 Release date: 2022-07-20 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
6M6R	Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 8-mer ssRNA Descriptor: Dicer Related Helicase, RNA (5'-R(*(GTP)P*GP*CP*CP*GP*CP*CP*C)-3'), ZINC ION Authors: Li, K, Zheng, J, Wirawan, M, Xiong, Z, Fedorova, O, Griffin, P, Plyle, A, Luo, D. Deposit date: 2020-03-16 Release date: 2021-03-17 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3). Nucleic Acids Res., 49, 2021
6M6S	Crystal structure of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3) C-terminal domain with 5'-ppp 12-mer dsRNA Descriptor: Dicer Related Helicase, RNA (5'-R(*(GTP)P*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*C)-3'), ZINC ION Authors: Li, K, Zheng, J, Wirawan, M, Xiong, Z, Fedorova, O, Griffin, P, Plyle, A, Luo, D. Deposit date: 2020-03-16 Release date: 2021-03-17 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Insights into the structure and RNA-binding specificity of Caenorhabditis elegans Dicer-related helicase 3 (DRH-3). Nucleic Acids Res., 49, 2021
4XHI	Crystal structure of native Thosea asigna virus RNA-dependent RNA polymerase (RdRP) at 2.15 Angstrom resolution Descriptor: GLYCEROL, RNA-dependent RNA polymerase, SULFATE ION Authors: Ferrero, D.S, Buxaderas, M, Rodriguez, J.F, Verdaguer, N. Deposit date: 2015-01-05 Release date: 2015-11-04 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog., 11, 2015
8A11	Cryo-EM structure of the Human SHMT1-RNA complex Descriptor: PYRIDOXAL-5'-PHOSPHATE, Serine hydroxymethyltransferase, cytosolic Authors: Spizzichino, S, Marabelli, C, Bharadwaj, A, Jakobi, A.J, Chaves-Sanjuan, A, Giardina, G, Bolognesi, M, Cutruzzola, F. Deposit date: 2022-05-30 Release date: 2023-06-14 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (3.52 Å) Cite: Cryo-EM structure of the Human SHMT1-RNA complex To Be Published

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