PDB: 299 resultsInfo pagesStatus searchChemie searchBIRD

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4DWM	Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, rRNA N-glycosidase Authors: Yamini, S, Pandey, S, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2012-02-25 Release date: 2012-03-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Crystal structure of the complex of type I Ribosome inactivating protein with N-acetylglucosamine at 1.62 A resolution To be Published
3SRP	Structure of Rivax: A Human Ricin Vaccine Descriptor: Ricin A chain, SULFATE ION Authors: Legler, P.M, Millard, C.B. Deposit date: 2011-07-07 Release date: 2011-08-03 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.14 Å) Cite: Structure of RiVax: a recombinant ricin vaccine. Acta Crystallogr.,Sect.D, 67, 2011
3BWH	Atomic resolution structure of cucurmosin, a novel type 1 RIP from the sarcocarp of Cucurbita moschata Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, beta-D-xylopyranose-(1-2)-[alpha-D-mannopyranose-(1-3)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Chen, L. Deposit date: 2008-01-09 Release date: 2008-10-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (1 Å) Cite: Atomic resolution structure of cucurmosin, a novel type 1 ribosome-inactivating protein from the sarcocarp of Cucurbita moschata. J.Struct.Biol., 164, 2008
3KU0	Structure of GAP31 with adenine at its binding pocket Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ADENINE, Ribosome-inactivating protein gelonin Authors: Kong, X.-P. Deposit date: 2009-11-26 Release date: 2010-01-26 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.9 Å) Cite: A new activity of anti-HIV and anti-tumor protein GAP31: DNA adenosine glycosidase--structural and modeling insight into its functions. Biochem.Biophys.Res.Commun., 391, 2010
8CX8	Stx2A1-BTB13086 Descriptor: 1,2-ETHANEDIOL, 5-(4-chlorophenyl)furan-2-carboxylic acid, CHLORIDE ION, ... Authors: Rudolph, M.J, Li, X.P. Deposit date: 2022-05-20 Release date: 2024-03-06 Last modified: 2024-09-18 Method: X-RAY DIFFRACTION (1.905 Å) Cite: Fragment Screening to Identify Inhibitors Targeting Ribosome Binding of Shiga Toxin 2. Acs Infect Dis., 10, 2024
4RZJ	Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, GLYCEROL, Ribosome inactivating protein Authors: Pandey, S, Kushwaha, G.S, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2014-12-22 Release date: 2015-01-14 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Structure of the complex of type 1 ribosome inactivating protein from Momordica balsamina with N-acetylglucosamine at 1.98 Angstrom resolution using crystals grown in different conditions TO BE PUBLISHED
2B7U	Ribosome inactivating protein type 1 from Charybdis maritima AGG Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHARYBDIN Authors: Gessmann, R, Petratos, K. Deposit date: 2005-10-05 Release date: 2006-06-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Isolation, characterization, sequencing and crystal structure of charybdin, a type 1 ribosome-inactivating protein from Charybdis maritima agg. Febs J., 273, 2006
6CWG	Ricin catalytic subunit bound go A9 VHH antibody Descriptor: CHLORIDE ION, Ricin, VHH antibody Authors: Rudolph, M.J, Mantis, N. Deposit date: 2018-03-30 Release date: 2019-01-16 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Contribution of an unusual CDR2 element of a single domain antibody in ricin toxin binding affinity and neutralizing activity. Protein Eng. Des. Sel., 31, 2018
8GCW	Stx2A1(Y77A)-P6 peptide Descriptor: P stalk protein, rRNA N-glycosylase Authors: Rudolph, M.J, Li, X.P. Deposit date: 2023-03-03 Release date: 2024-03-06 Last modified: 2024-09-18 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Fragment Screening to Identify Inhibitors Targeting Ribosome Binding of Shiga Toxin 2. Acs Infect Dis., 10, 2024
8I7P	Crystal structure of Ricin A chain bound with N2-(2-amino-4-oxo-3,4-dihydropteridine-7-carbonyl)glycyl-L-tyrosine Descriptor: 6-(2-ethyl-4-hydroxyphenyl)-1H-indazole-3-carboxamide, Ricin A chain, SULFATE ION Authors: Goto, M, Sakamoto, N, Higashi, S, Kawata, R, Nagatsu, K, Saito, R. Deposit date: 2023-02-01 Release date: 2023-09-20 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of ricin toxin A chain complexed with a highly potent pterin-based small-molecular inhibitor. J Enzyme Inhib Med Chem, 38, 2023
6URY	Crystal structure of ricin A chain in complex with inhibitor 9-oxo-4-fluorenecarboxamide Descriptor: 1,2-ETHANEDIOL, 9-oxo-9H-fluorene-4-carboxamide, CHLORIDE ION, ... Authors: Harijan, R.K, Li, X.P, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.54 Å) Cite: Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes. Acs Infect Dis., 6, 2020
6URX	Crystal structure of ricin A chain in complex with inhibitor 5-phenyl-2-thiophenecarboxylic acid Descriptor: 1,2-ETHANEDIOL, 5-phenylthiophene-2-carboxylic acid, DIMETHYL SULFOXIDE, ... Authors: Harijan, R.K, Li, X.P, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.99 Å) Cite: Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes. Acs Infect Dis., 6, 2020
6OBM	Ricin A chain bound to VHH antibody V6A7 Descriptor: CHLORIDE ION, Ricin A chain, VHH antibody V6A7 Authors: Rudolph, M.J. Deposit date: 2019-03-21 Release date: 2020-04-01 Last modified: 2020-10-14 Method: X-RAY DIFFRACTION (2.495 Å) Cite: Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol., 432, 2020
2R3D	Ricin A-chain (recombinant) complex with Acetamide Descriptor: ACETAMIDE, Ricin A chain (EC 3.2.2.22), SULFATE ION Authors: Carra, J.H, McHugh, C.A, Mulligan, S, Machiesky, L.M, Soares, A.S, Millard, C.B. Deposit date: 2007-08-29 Release date: 2007-11-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.09 Å) Cite: Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site BMC Struct.Biol., 7, 2007
6OBC	Ricin A chain bound to camelid Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Ricin A chain, ... Authors: Rudolph, M.J. Deposit date: 2019-03-20 Release date: 2020-04-01 Last modified: 2020-10-14 Method: X-RAY DIFFRACTION (1.762 Å) Cite: Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol., 432, 2020
6OCA	Ricin A chain bound to VHH antibody V2G10 Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, Ricin A chain, ... Authors: Rudolph, M.J. Deposit date: 2019-03-22 Release date: 2020-04-01 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.113 Å) Cite: Intracellular Neutralization of Ricin Toxin by Single-domain Antibodies Targeting the Active Site. J.Mol.Biol., 432, 2020
3EJ5	complex of Ricin A chain and pyrimidine-based inhibitor Descriptor: 4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid, Ricin A chain Authors: Bai, Y, Monzingo, A.F, Robertus, J.D. Deposit date: 2008-09-17 Release date: 2009-04-07 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The X-ray structure of ricin A chain with a novel inhibitor Arch.Biochem.Biophys., 483, 2009
5U4M	RTA-V1C7-G29R-no_salt Descriptor: CHLORIDE ION, Ricin, V1C7 VHH antibody Authors: Rudolph, M.J, Mantis, N. Deposit date: 2016-12-05 Release date: 2017-12-13 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies. Proteins, 85, 2017
2QES	Crystal structure of the ribosome inactivating protein PDL4 from P. dioica leaves in complex with adenine Descriptor: ADENINE, Ribosome-inactivating protein PD-L4 Authors: Ruggiero, A, Berisio, R. Deposit date: 2007-06-26 Release date: 2008-02-26 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (1.24 Å) Cite: Atomic resolution (1.1 A) structure of the ribosome-inactivating protein PD-L4 from Phytolacca dioica L. leaves Proteins, 71, 2008
4M5A	Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, NG,NG-DIMETHYL-L-ARGININE, rRNA N-glycosidase Authors: Yamini, S, Pandey, S, Kushwaha, G.S, Sinha, M, Bhushan, A, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2013-08-08 Release date: 2013-08-28 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of the complex of Ribosome inactivating protein from Momordica balsamina inhibited by asymmetric dimethyl arginine at 1.70 A resolution To be Published
6URW	Crystal structure of ricin A chain in complex with inhibitor 4-(2-thienylmethyl)benzoic acid Descriptor: 1,2-ETHANEDIOL, 4-[(thiophen-2-yl)methyl]benzoic acid, DIMETHYL SULFOXIDE, ... Authors: Harijan, R.K, Li, X.P, Bonanno, J.B, Almo, S.C, Tumer, N.E, Schramm, V.L. Deposit date: 2019-10-24 Release date: 2020-06-17 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Small Molecule Inhibitors Targeting the Interaction of Ricin Toxin A Subunit with Ribosomes. Acs Infect Dis., 6, 2020
2R2X	Ricin A-chain (recombinant) complex with Urea Descriptor: Ricin A chain, SULFATE ION, UREA Authors: Carra, J.H, McHugh, C.A, Mulligan, S, Machiesky, L.M, Soares, A.S, Millard, C.B. Deposit date: 2007-08-28 Release date: 2007-11-20 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Fragment-based identification of determinants of conformational and spectroscopic change at the ricin active site. Bmc Struct.Biol., 7, 2007
4LT4	Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, ARGININE, GLYCEROL, ... Authors: Yamini, S, Pandey, S, Bhushan, A, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2013-07-23 Release date: 2013-08-07 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.69 Å) Cite: Crystal structure of arginine inhibited Ribosome inactivating protein from Momordica balsamina at 1.69 A resolution To be Published
5U4L	RTA-V1C7_G29R-high-salt Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, PHOSPHATE ION, ... Authors: Rudolph, M.J, Mantis, N. Deposit date: 2016-12-05 Release date: 2017-12-13 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Using homology modeling to interrogate binding affinity in neutralization of ricin toxin by a family of single domain antibodies. Proteins, 85, 2017
5GU4	rRNA N-glycosylase RTA Descriptor: GLY-PHE-GLY-LEU-PHE-ASP, GLYCEROL, Ricin Authors: Shi, W.W, Tang, Y.S, Sze, S.Y, Zhu, Z.N, Wong, K.B, Shaw, P.C. Deposit date: 2016-08-24 Release date: 2016-11-02 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal Structure of Ribosome-Inactivating Protein Ricin A Chain in Complex with the C-Terminal Peptide of the Ribosomal Stalk Protein P2 Toxins, 8, 2016

 

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