Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5VZN
DownloadVisualize
BU of 5vzn by Molmil
Wild-type sperm whale myoglobin with nitric oxide
Descriptor: GLYCEROL, Myoglobin, NITRIC OXIDE, ...
Authors:Wang, B, Thomas, L.M, Richter-Addo, G.B.
Deposit date:2017-05-29
Release date:2018-06-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Nitrosyl Myoglobins and Their Nitrite Precursors: Crystal Structural and Quantum Mechanics and Molecular Mechanics Theoretical Investigations of Preferred Fe -NO Ligand Orientations in Myoglobin Distal Pockets.
Biochemistry, 57, 2018
6ZJ7
DownloadVisualize
BU of 6zj7 by Molmil
Trehalose transferase (TreT) from Thermoproteus uzoniensis soaked with Mg
Descriptor: GLYCEROL, TETRAETHYLENE GLYCOL, THIOCYANATE ION, ...
Authors:Bento, I, Mestrom, L, Marsden, S.R, van der Eijk, H, Laustsen, J.U, Jeffries, C.M, Svergun, D.I, Hagedoorn, P.-H, Hanefeld, U.
Deposit date:2020-06-28
Release date:2020-09-30
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Anomeric Selectivity of Trehalose Transferase with Rare l-Sugars.
Acs Catalysis, 10, 2020
7LQO
DownloadVisualize
BU of 7lqo by Molmil
Crystal structure of a genetically encoded red fluorescent peroxynitrite biosensor, pnRFP
Descriptor: PHOSPHATE ION, red fluorescent peroxynitrite biosensor pnRFP
Authors:Huang, M, Ng, H.L, Pang, Y, Zhang, S, Fan, Y, Yeh, H, Xiong, Y, Li, X, Ai, H.
Deposit date:2021-02-14
Release date:2022-03-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Development, Characterization, and Structural Analysis of a Genetically Encoded Red Fluorescent Peroxynitrite Biosensor
To Be Published
6HBB
DownloadVisualize
BU of 6hbb by Molmil
Crystal Structure of the small subunit-like domain 1 of CcmM from Synechococcus elongatus (strain PCC 7942)
Descriptor: Carbon dioxide concentrating mechanism protein CcmM, SULFATE ION
Authors:Wang, H, Yan, X, Aigner, H, Bracher, A, Nguyen, N.D, Hee, W.Y, Long, B.M, Price, G.D, Hartl, F.U, Hayer-Hartl, M.
Deposit date:2018-08-10
Release date:2018-12-12
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Rubisco condensate formation by CcmM in beta-carboxysome biogenesis.
Nature, 566, 2019
6G8S
DownloadVisualize
BU of 6g8s by Molmil
[Ru(TAP)2(11,12-CN2-dppz)]2+ bound to d(CCGGACCCGG/CCGGGTCCGG)2
Descriptor: BARIUM ION, DNA (5'-D(*CP*CP*GP*GP*AP*CP*CP*CP*GP*G)-3'), DNA (5'-D(*CP*CP*GP*GP*GP*TP*CP*CP*GP*G)-3'), ...
Authors:McQuaid, K.T, Hall, J.P, Cardin, C.J.
Deposit date:2018-04-09
Release date:2019-04-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:X-ray Crystal Structures Show DNA Stacking Advantage of Terminal Nitrile Substitution in Ru-dppz Complexes.
Chemistry, 24, 2018
5HRX
DownloadVisualize
BU of 5hrx by Molmil
Crystal structure of the fifth bromodomain of human PB1 in complex with 1-butylisochromeno[3,4-c]pyrazol-5(2H)-one) compound
Descriptor: 1,2-ETHANEDIOL, 1-butylisochromeno[3,4-c]pyrazol-5(3H)-one, Protein polybromo-1
Authors:Tallant, C, Myrianthopoulos, V, Gaboriaud-Kolar, N, Newman, J.A, Picaud, S, von Delft, F, Arrowsmith, C.H, Edwards, A.M, Bountra, C, Mikros, E, Knapp, S.
Deposit date:2016-01-24
Release date:2016-10-12
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.73 Å)
Cite:Discovery and Optimization of a Selective Ligand for the Switch/Sucrose Nonfermenting-Related Bromodomains of Polybromo Protein-1 by the Use of Virtual Screening and Hydration Analysis.
J.Med.Chem., 59, 2016
6QUI
DownloadVisualize
BU of 6qui by Molmil
GHK tagged GFP variant at 17Kev
Descriptor: COPPER (II) ION, GLYCEROL, Green fluorescent protein, ...
Authors:Huyton, T, Gorlich, D.
Deposit date:2019-02-27
Release date:2020-05-27
Last modified:2022-12-07
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography.
Acta Crystallogr D Struct Biol, 76, 2020
6HBE
DownloadVisualize
BU of 6hbe by Molmil
Cu-containing nitrite reductase (NirK) from Thermus scotoductus SA-01
Descriptor: CALCIUM ION, COPPER (II) ION, Copper-containing nitrite reductase
Authors:Opperman, D.J, Ferroni, F.M.
Deposit date:2018-08-10
Release date:2019-01-23
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:A three-domain copper-nitrite reductase with a unique sensing loop.
Iucrj, 6, 2019
7LXQ
DownloadVisualize
BU of 7lxq by Molmil
Collagen Mimetic Peptide with a Yaa-position Aza-proline
Descriptor: Collagen mimetic peptide
Authors:Melton, S.D, Harris, T, Chenoweth, D.M.
Deposit date:2021-03-04
Release date:2022-03-16
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Collagen Mimetic Peptide with a Yaa-position Aza-proline
To Be Published
5VZR
DownloadVisualize
BU of 5vzr by Molmil
Crystal Structure of MERS-CoV neutralizing antibody G4 Fab
Descriptor: G4 antibody heavy chain, G4 antibody light chain, GLYCEROL
Authors:Wang, N, Wrapp, D, McLellan, J.S.
Deposit date:2017-05-29
Release date:2017-08-30
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Immunogenicity and structures of a rationally designed prefusion MERS-CoV spike antigen.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6BKL
DownloadVisualize
BU of 6bkl by Molmil
Influenza A M2 transmembrane domain bound to rimantadine
Descriptor: (1S)-1-[(3R,5R,7R)-tricyclo[3.3.1.1~3,7~]decan-1-yl]ethan-1-amine, Matrix protein 2, RIMANTADINE
Authors:Thomaston, J.L, DeGrado, W.F.
Deposit date:2017-11-08
Release date:2018-09-19
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.995 Å)
Cite:Inhibitors of the M2 Proton Channel Engage and Disrupt Transmembrane Networks of Hydrogen-Bonded Waters.
J. Am. Chem. Soc., 140, 2018
5HSH
DownloadVisualize
BU of 5hsh by Molmil
Crystal structure of the G291R mutant of human phosphoglucomutase 1
Descriptor: Phosphoglucomutase-1, SULFATE ION
Authors:Stiers, K.M, Beamer, L.J.
Deposit date:2016-01-25
Release date:2016-04-27
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Induced Structural Disorder as a Molecular Mechanism for Enzyme Dysfunction in Phosphoglucomutase 1 Deficiency.
J.Mol.Biol., 428, 2016
6G91
DownloadVisualize
BU of 6g91 by Molmil
Fragment-based discovery of a highly potent, orally bioavailable inhibitor which modulates the phosphorylation and catalytic activity of ERK1/2
Descriptor: 5-chloranyl-~{N}-(oxan-4-yl)pyrimidin-2-amine, Mitogen-activated protein kinase 1, SULFATE ION
Authors:O'Reilly, M.
Deposit date:2018-04-10
Release date:2018-05-30
Last modified:2018-06-27
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Fragment-Based Discovery of a Potent, Orally Bioavailable Inhibitor That Modulates the Phosphorylation and Catalytic Activity of ERK1/2.
J. Med. Chem., 61, 2018
6BND
DownloadVisualize
BU of 6bnd by Molmil
Crystal structure of the intrinsic colistin resistance enzyme ICR(Mc) from Moraxella catarrhalis, catalytic domain, Thr315Ala mutant mono-zinc and phosphoethanolamine complex
Descriptor: PHOSPHORIC ACID MONO-(2-AMINO-ETHYL) ESTER, POLYETHYLENE GLYCOL (N=34), Phosphoethanolamine transferase, ...
Authors:Stogios, P.J, Evdokimova, E, Wawrzak, Z, Savchenko, A, Anderson, W.F, Satchell, K.J, Joachimiak, A, Center for Structural Genomics of Infectious Diseases (CSGID)
Deposit date:2017-11-16
Release date:2018-01-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.66 Å)
Cite:Substrate Recognition by a Colistin Resistance Enzyme from Moraxella catarrhalis.
ACS Chem. Biol., 13, 2018
7QEM
DownloadVisualize
BU of 7qem by Molmil
bacterial IMPDH chimera
Descriptor: INOSINIC ACID, Inosine-5'-monophosphate dehydrogenase
Authors:Labesse, G, Gelin, M, Gedeon, A, Haouz, A, Munier-Lehmann, H.
Deposit date:2021-12-03
Release date:2023-06-14
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Insight into the role of the Bateman domain at the molecular and physiological levels through engineered IMP dehydrogenases.
Protein Sci., 32, 2023
6QUV
DownloadVisualize
BU of 6quv by Molmil
Crystal Structure of KRAS-G12D in complex with GMP-PCP and compound 15R
Descriptor: (6~{a}~{R},11~{b}~{S})-6~{a}-(1,4-dimethylpiperidin-4-yl)-7,11~{b}-dihydro-6~{H}-indolo[2,3-c]isoquinolin-5-one, GTPase KRas, MAGNESIUM ION, ...
Authors:Fischer, G, Kessler, D, Muellauer, B, Wolkerstorfer, B.
Deposit date:2019-02-28
Release date:2019-07-31
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.475 Å)
Cite:KRAS Binders Hidden in Nature.
Chemistry, 25, 2019
6FW0
DownloadVisualize
BU of 6fw0 by Molmil
Crystal structure of human monoamine oxidase B (MAO B) in complex with chlorophenyl-chromone-carboxamide
Descriptor: Amine oxidase [flavin-containing] B, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Reis, J, Manzella, N, Cagide, F, Mialet-Perez, J, Uriarte, E, Parini, A, Borges, F, Binda, C.
Deposit date:2018-03-05
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Tight-Binding Inhibition of Human Monoamine Oxidase B by Chromone Analogs: A Kinetic, Crystallographic, and Biological Analysis.
J. Med. Chem., 61, 2018
8T7J
DownloadVisualize
BU of 8t7j by Molmil
Oxygen- and PLP-dependent Cap15 holoenzyme bound with phosphate anion
Descriptor: 1,2-ETHANEDIOL, PHOSPHATE ION, Putative selenocysteine synthase
Authors:Daniel-Ivad, P, Ryan, K.S.
Deposit date:2023-06-20
Release date:2023-08-23
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of the Oxygen, Pyridoxal Phosphate-Dependent Capuramycin Biosynthetic Protein Cap15.
Biochemistry, 62, 2023
6FW7
DownloadVisualize
BU of 6fw7 by Molmil
Crystal structure of L-tryptophan oxidase VioA from Chromobacterium violaceum in complex with 4-Fluoro-L-Tryptophan
Descriptor: 4-FLUOROTRYPTOPHANE, FLAVIN-ADENINE DINUCLEOTIDE, Flavin-dependent L-tryptophan oxidase VioA, ...
Authors:Lai, H.E, Morgan, M, Moore, S, Freemont, P.
Deposit date:2018-03-05
Release date:2019-02-13
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3 Å)
Cite:A GenoChemetic strategy for derivatization of the violacein natural product scaffold
Biorxiv, 2019
8TTI
DownloadVisualize
BU of 8tti by Molmil
Trp-6-Halogenase BorH complexed with FAD and Trp
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, SULFATE ION, TRYPTOPHAN, ...
Authors:Lingkon, K, Bellizzi, J.J.
Deposit date:2023-08-14
Release date:2023-08-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Crystallographic and thermodynamic evidence of negative cooperativity of flavin and tryptophan binding in the flavin-dependent halogenases AbeH and BorH.
Biorxiv, 2023
7L92
DownloadVisualize
BU of 7l92 by Molmil
C1B domain of Protein kinase C in complex with diacylglycerol and dodecyl 2-(trimethylammonio)ethyl phosphate
Descriptor: DIACYL GLYCEROL, ETHANOL, Protein kinase C delta type, ...
Authors:Katti, S.S, Krieger, I.V.
Deposit date:2021-01-01
Release date:2022-05-04
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Structural anatomy of Protein Kinase C C1 domain interactions with diacylglycerol and other agonists.
Nat Commun, 13, 2022
6HL3
DownloadVisualize
BU of 6hl3 by Molmil
wild-type NuoEF from Aquifex aeolicus - oxidized form bound to NAD+
Descriptor: 3[N-MORPHOLINO]PROPANE SULFONIC ACID, CHLORIDE ION, FE2/S2 (INORGANIC) CLUSTER, ...
Authors:Gerhardt, S, Friedrich, T, Einsle, O, Gnandt, E, Schulte, M, Fiegen, D.
Deposit date:2018-09-10
Release date:2019-06-26
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:A mechanism to prevent production of reactive oxygen species by Escherichia coli respiratory complex I.
Nat Commun, 10, 2019
5W11
DownloadVisualize
BU of 5w11 by Molmil
Biochemical and structural insights into the catalytic mechanism of thermostable cellobiohydrolase Cel7A from industrially relevant fungus Myceliophthora thermophila
Descriptor: Glucanase, TRIS-HYDROXYMETHYL-METHYL-AMMONIUM, alpha-D-mannopyranose, ...
Authors:Kadowaki, M.A.S, Higasi, P, de Godoy, M.O, Prade, R.A, Polikarpov, I.
Deposit date:2017-06-01
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.311 Å)
Cite:Biochemical and structural insights into a thermostable cellobiohydrolase from Myceliophthora thermophila.
FEBS J., 285, 2018
6FWC
DownloadVisualize
BU of 6fwc by Molmil
Crystal structure of human monoamine oxidase B (MAO B) in complex with fluorophenyl-chromone-carboxamide
Descriptor: Amine oxidase [flavin-containing] B, FLAVIN-ADENINE DINUCLEOTIDE, GLYCEROL, ...
Authors:Reis, J, Manzella, N, Cagide, F, Mialet-Perez, J, Uriarte, E, Parini, A, Borges, F, Binda, C.
Deposit date:2018-03-06
Release date:2018-04-25
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Tight-Binding Inhibition of Human Monoamine Oxidase B by Chromone Analogs: A Kinetic, Crystallographic, and Biological Analysis.
J. Med. Chem., 61, 2018
6FWF
DownloadVisualize
BU of 6fwf by Molmil
Low resolution structure of Neisseria meningitidis qNOR
Descriptor: CALCIUM ION, FE (III) ION, Nitric-oxide reductase, ...
Authors:Young, D, Antonyuk, S, Tosha, T, Hisano, T, Hasnain, S, Shiro, Y.
Deposit date:2018-03-06
Release date:2018-03-14
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (4.2 Å)
Cite:Characterization of the quinol-dependent nitric oxide reductase from the pathogen Neisseria meningitidis, an electrogenic enzyme.
Sci Rep, 8, 2018

224201

数据于2024-08-28公开中

PDB statisticsPDBj update infoContact PDBjnumon