Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3J1O
DownloadVisualize
BU of 3j1o by Molmil
Cryo-EM map of a yeast minimal preinitiation complex interacting with the Mediator Head module
Descriptor: Mediator of RNA polymerase II transcription subunit 11, Mediator of RNA polymerase II transcription subunit 17, Mediator of RNA polymerase II transcription subunit 18, ...
Authors:Asturias, F.J, Imasaki, T.
Deposit date:2012-03-29
Release date:2013-03-06
Last modified:2024-02-21
Method:ELECTRON MICROSCOPY (16 Å)
Cite:Interaction of the mediator head module with RNA polymerase II.
Structure, 20, 2012
5AOY
DownloadVisualize
BU of 5aoy by Molmil
Structure of mouse Endonuclease V
Descriptor: ENDONUCLEASE V
Authors:Vik, E.S, Nawaz, M.S, Ronander, M.E, Solvoll, A.M, Strom-Andersen, P, Bjoras, M, Alseth, I, Dalhus, B.
Deposit date:2015-09-14
Release date:2016-05-04
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:Crystal Structure and Md Simulation of Mouse Endov Reveal Wedge Motif Plasticity in This Inosine-Specific Endonuclease.
Sci.Rep., 6, 2016
1FNN
DownloadVisualize
BU of 1fnn by Molmil
CRYSTAL STRUCTURE OF CDC6P FROM PYROBACULUM AEROPHILUM
Descriptor: ADENOSINE-5'-DIPHOSPHATE, CELL DIVISION CONTROL PROTEIN 6, MAGNESIUM ION
Authors:Liu, J, Smith, C.L, DeRyckere, D, DeAngelis, K, Martin, G.S, Berger, J.M.
Deposit date:2000-08-22
Release date:2000-10-04
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structure and function of Cdc6/Cdc18: implications for origin recognition and checkpoint control.
Mol.Cell, 6, 2000
7WLP
DownloadVisualize
BU of 7wlp by Molmil
Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses
Descriptor: Histone H2B type 1-O,Histone H2A type 1-D, Tegument protein BKRF4
Authors:Chen, J, Shan, S, Zhou, Z.
Deposit date:2022-01-13
Release date:2022-11-16
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.29 Å)
Cite:Epstein-Barr virus protein BKRF4 restricts nucleosome assembly to suppress host antiviral responses.
Proc.Natl.Acad.Sci.USA, 119, 2022
4ELY
DownloadVisualize
BU of 4ely by Molmil
CCDBVFI:GYRA14EC
Descriptor: CHLORIDE ION, CcdB, DNA gyrase subunit A, ...
Authors:De Jonge, N, Simic, R, Buts, L, Haesaerts, S, Roelants, K, Garcia-Pino, A, Sterckx, Y, De Greve, H, Lah, J, Loris, R.
Deposit date:2012-04-11
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.932 Å)
Cite:Alternative interactions define gyrase specificity in the CcdB family.
Mol.Microbiol., 84, 2012
4CDM
DownloadVisualize
BU of 4cdm by Molmil
Crystal structure of M. mazei photolyase soaked with synthetic 8-HDF
Descriptor: 1-deoxy-1-(8-hydroxy-2,4-dioxo-3,4-dihydropyrimido[4,5-b]quinolin-10(2H)-yl)-D-ribitol, DEOXYRIBODIPYRIMIDINE PHOTOLYASE, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Kiontke, S, Batschauer, A, Essen, L.-O.
Deposit date:2013-11-01
Release date:2014-05-21
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural and Evolutionary Aspects of Antenna Chromophore Usage by Class II Photolyases.
J.Biol.Chem., 289, 2014
3QIO
DownloadVisualize
BU of 3qio by Molmil
Crystal Structure of HIV-1 RNase H with engineered E. coli loop and N-hydroxy quinazolinedione inhibitor
Descriptor: 3-hydroxy-6-(phenylsulfonyl)quinazoline-2,4(1H,3H)-dione, Gag-Pol polyprotein,Ribonuclease HI,Gag-Pol polyprotein, MANGANESE (II) ION, ...
Authors:Lansdon, E.B, Liu, Q.
Deposit date:2011-01-27
Release date:2011-04-20
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.4011 Å)
Cite:Structural and Binding Analysis of Pyrimidinol Carboxylic Acid and N-Hydroxy Quinazolinedione HIV-1 RNase H Inhibitors.
Antimicrob.Agents Chemother., 55, 2011
1K8L
DownloadVisualize
BU of 1k8l by Molmil
XBY6: An analog of CK14 containing 6 dithiophosphate groups
Descriptor: FIRST STRAND OF CK14 DNA DUPLEX, SECOND STRAND OF CK14 DNA DUPLEX
Authors:Volk, D.E, Yang, X, Fennewald, S.M, King, D.J, Bassett, S.E, Venkitachalam, S, Herzog, N, Luxon, B.A, Gorenstein, D.G.
Deposit date:2001-10-24
Release date:2003-04-15
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Solution structure and design of dithiophosphate backbone aptamers targeting transcription factor NF-kappaB
Bioorg.Chem., 30, 2002
4NRM
DownloadVisualize
BU of 4nrm by Molmil
Crystal structure of human ALKBH5 in complex with citrate and acetate
Descriptor: ACETATE ION, CITRATE ANION, RNA demethylase ALKBH5
Authors:Feng, C, Chen, Z, Liu, Y.
Deposit date:2013-11-27
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition
J.Biol.Chem., 289, 2014
1TLM
DownloadVisualize
BU of 1tlm by Molmil
STRUCTURAL ASPECTS OF INOTROPIC BIPYRIDINE BINDING: CRYSTAL STRUCTURE DETERMINATION TO 1.9 ANGSTROMS OF THE HUMAN SERUM TRANSTHYRETIN-MILRINONE COMPLEX
Descriptor: MILRINONE, TRANSTHYRETIN
Authors:Wojtczak, A, Luft, J, Cody, V.
Deposit date:1992-12-22
Release date:1994-01-31
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural aspects of inotropic bipyridine binding. Crystal structure determination to 1.9 A of the human serum transthyretin-milrinone complex.
J.Biol.Chem., 268, 1993
4NRO
DownloadVisualize
BU of 4nro by Molmil
Crystal structure of human ALKBH5 in complex with alpha-ketoglutarate
Descriptor: 2-OXOGLUTARIC ACID, MANGANESE (II) ION, RNA demethylase ALKBH5
Authors:Feng, C, Chen, Z, Liu, Y.
Deposit date:2013-11-27
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition
J.Biol.Chem., 289, 2014
5D1Y
DownloadVisualize
BU of 5d1y by Molmil
Low resolution crystal structure of human ribonucleotide reductase alpha6 hexamer in complex with dATP
Descriptor: Ribonucleoside-diphosphate reductase large subunit
Authors:Ando, N, Li, H, Brignole, E.J, Thompson, S, McLaughlin, M.I, Page, J, Asturias, F, Stubbe, J, Drennan, C.L.
Deposit date:2015-08-04
Release date:2016-01-20
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (9.005 Å)
Cite:Allosteric Inhibition of Human Ribonucleotide Reductase by dATP Entails the Stabilization of a Hexamer.
Biochemistry, 55, 2016
4NRQ
DownloadVisualize
BU of 4nrq by Molmil
Crystal structure of human ALKBH5 in complex with pyridine-2,4-dicarboxylate
Descriptor: MANGANESE (II) ION, PYRIDINE-2,4-DICARBOXYLIC ACID, RNA demethylase ALKBH5
Authors:Feng, C, Chen, Z, Liu, Y.
Deposit date:2013-11-27
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition
J.Biol.Chem., 289, 2014
4ELZ
DownloadVisualize
BU of 4elz by Molmil
CCDBVFI:GYRA14VFI
Descriptor: CcdB, DNA gyrase subunit A, GLYCEROL
Authors:De Jonge, N, Simic, M, Buts, L, Haesaerts, S, Roelants, K, Garcia-Pino, A, Sterckx, Y, De Greve, H, Lah, J, Loris, R.
Deposit date:2012-04-11
Release date:2012-05-30
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Alternative interactions define gyrase specificity in the CcdB family.
Mol.Microbiol., 84, 2012
4NRP
DownloadVisualize
BU of 4nrp by Molmil
Crystal structure of human ALKBH5 in complex with N-oxalylglycine
Descriptor: MANGANESE (II) ION, N-OXALYLGLYCINE, RNA demethylase ALKBH5
Authors:Feng, C, Chen, Z, Liu, Y.
Deposit date:2013-11-27
Release date:2014-03-19
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of the human RNA demethylase Alkbh5 reveal basis for substrate recognition
J.Biol.Chem., 289, 2014
2REU
DownloadVisualize
BU of 2reu by Molmil
Crystal Structure of the C-terminal of Sau3AI fragment
Descriptor: MAGNESIUM ION, Type II restriction enzyme Sau3AI
Authors:Hu, X, Yu, F, Xu, C, He, J.
Deposit date:2007-09-27
Release date:2008-09-30
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and function of C-terminal Sau3AI domain
Biochim.Biophys.Acta, 1794, 2009
6J90
DownloadVisualize
BU of 6j90 by Molmil
Crystal Structure of GyraseB N-Terminal Domain complex with ATP from Salmonella Typhi at 2.2A Resolution
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, CHLORIDE ION, DI(HYDROXYETHYL)ETHER, ...
Authors:Kaur, G, Sachdeva, E, Tiwari, P, Gupta, D, Ethayathulla, A.S, Kaur, P.
Deposit date:2019-01-21
Release date:2020-01-22
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of GyraseB N-Terminal Domain complex with ATP from Salmonella Typhi at 2.2A Resolution
To Be Published
1Y7Y
DownloadVisualize
BU of 1y7y by Molmil
High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila
Descriptor: C.AhdI
Authors:McGeehan, J.E, Streeter, S.D, Papapanagiotou, I, Fox, G.C, Kneale, G.G.
Deposit date:2004-12-10
Release date:2005-02-22
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:High-resolution crystal structure of the restriction-modification controller protein C.AhdI from Aeromonas hydrophila.
J.Mol.Biol., 346, 2005
1ZLA
DownloadVisualize
BU of 1zla by Molmil
X-ray Structure of a Kaposi's sarcoma herpesvirus LANA peptide bound to the nucleosomal core
Descriptor: Histone H4, Palindromic 146bp Human alpha-Satellite DNA fragment, Xenopus laevis-like histone H2A, ...
Authors:Chodaparambil, J.V, Barbera, A.J, Kaye, K.M, Luger, K.
Deposit date:2005-05-05
Release date:2006-02-28
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:The nucleosomal surface as a docking station for Kaposi's sarcoma herpesvirus LANA.
Science, 311, 2006
7W82
DownloadVisualize
BU of 7w82 by Molmil
Crystal structure of maize RDR2
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W88
DownloadVisualize
BU of 7w88 by Molmil
CryoEM structure of open form ZmRDR2 at 3.5 Angstroms resolution
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.5 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
7W84
DownloadVisualize
BU of 7w84 by Molmil
CryoEM structure of apo form ZmRDR2 at 3.4 Angstroms resolution
Descriptor: RNA-dependent RNA polymerase
Authors:Du, X, Yang, Z, Du, J.
Deposit date:2021-12-07
Release date:2022-06-08
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure of plant RNA-DEPENDENT RNA POLYMERASE 2, an enzyme involved in small interfering RNA production.
Plant Cell, 34, 2022
1Q2T
DownloadVisualize
BU of 1q2t by Molmil
Solution structure of d(5mCCTCTCC)4
Descriptor: 5'-D(*(MCY)P*CP*TP*CP*TP*CP*C)-3'
Authors:Leroy, J.-L.
Deposit date:2003-07-26
Release date:2003-09-23
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:T.T pair intercalation and duplex inter-conversion within i-motif tetramers
J.Mol.Biol., 333, 2003
1WV6
DownloadVisualize
BU of 1wv6 by Molmil
X-ray structure of the A-decamer GCGTATACGC with a single 2'-O-butyl thymine in place of T6, Sr-form
Descriptor: 5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3', STRONTIUM ION
Authors:Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharam, M.
Deposit date:2004-12-11
Release date:2005-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications.
Biochemistry, 44, 2005
1WV5
DownloadVisualize
BU of 1wv5 by Molmil
X-ray structure of the A-decamer GCGTATACGC with a single 2'-o-butyl thymine in place of T6, Mg-form
Descriptor: 5'-D(*GP*CP*GP*TP*AP*(2BT)P*AP*CP*GP*C)-3', MAGNESIUM ION
Authors:Egli, M, Minasov, G, Tereshko, V, Pallan, P.S, Teplova, M, Inamati, G.B, Lesnik, E.A, Owens, S.R, Ross, B.S, Prakash, T.P, Manoharam, M.
Deposit date:2004-12-11
Release date:2005-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Probing the influence of stereoelectronic effects on the biophysical properties of oligonucleotides: comprehensive analysis of the RNA affinity, nuclease resistance, and crystal structure of ten 2'-O-ribonucleic acid modifications.
Biochemistry, 44, 2005

224572

数据于2024-09-04公开中

PDB statisticsPDBj update infoContact PDBjnumon