PDB: 520 resultsInfo pagesStatus searchChemie searchBIRD

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6N89	Cryo-EM structure of the Importin beta:Histone H1.0 complex Descriptor: Histone H1.0, Importin subunit beta-1 Authors: Bilokapic, S, Ivic, N, Halic, M. Deposit date: 2018-11-28 Release date: 2019-02-27 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (7.5 Å) Cite: Fuzzy Interactions Form and Shape the Histone Transport Complex. Mol. Cell, 73, 2019
2R8J	Structure of the Eukaryotic DNA Polymerase eta in complex with 1,2-d(GpG)-cisplatin containing DNA Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, CALCIUM ION, Cisplatin, ... Authors: Carell, T, Alt, A, Lammens, K. Deposit date: 2007-09-11 Release date: 2007-12-11 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Bypass of DNA lesions generated during anticancer treatment with cisplatin by DNA polymerase eta Science, 318, 2007
1L1H	Crystal Structure of the Quadruplex DNA-Drug Complex Descriptor: 3-PYRROLIDIN-1-YL-N-[6-(3-PYRROLIDIN-1-YL-PROPIONYLAMINO)-ACRIDIN-3-YL]-PROPIONAMIDE, 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G.N, Neidle, S. Deposit date: 2002-02-16 Release date: 2003-02-11 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of a G-quadruplex-Ligand Complex J.Mol.Biol., 326, 2003
1JPQ	Crystal Structure of the Oxytricha Telomeric DNA at 1.6A Descriptor: 5'-D(*GP*GP*GP*GP*(BRU)P*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G, Neidle, S. Deposit date: 2001-08-03 Release date: 2002-06-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J.Mol.Biol., 320, 2002
1KB1	SOLUTION STRUCTURE OF AN 11-MER DNA DUPLEX CONTAINING 6-THIOGUANINE OPPOSITE CYTOSINE Descriptor: 5'-D(*CP*GP*TP*AP*CP*(S6G)P*CP*AP*TP*GP*C)-3', 5'-D(*GP*CP*AP*TP*GP*CP*GP*TP*AP*CP*G)-3' Authors: Bohon, J, De Los Santos, C.R. Deposit date: 2001-11-05 Release date: 2001-11-28 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structural effect of the anticancer agent 6-thioguanine on duplex DNA. Nucleic Acids Res., 31, 2003
1NBV	AN AUTOANTIBODY TO SINGLE-STRANDED DNA: COMPARISON OF THE THREE-DIMENSIONAL STRUCTURES OF THE UNLIGANDED FAB AND A DEOXYNUCLEOTIDE-FAB COMPLEX Descriptor: IGG2B-KAPPA BV04-01 FAB (HEAVY CHAIN), IGG2B-KAPPA BV04-01 FAB (LIGHT CHAIN) Authors: Herron, J.N, He, X.M, Edmundson, A.B. Deposit date: 1993-03-16 Release date: 1994-01-31 Last modified: 2019-08-14 Method: X-RAY DIFFRACTION (2 Å) Cite: An autoantibody to single-stranded DNA: comparison of the three-dimensional structures of the unliganded Fab and a deoxynucleotide-Fab complex. Proteins, 11, 1991
1NR8	The crystal structure of a D-Lysine-based chiral PNA-DNA duplex Descriptor: 5'-D(P*AP*GP*TP*GP*AP*TP*CP*TP*AP*C)-3', H-((GPN)*(TPN)*(APN)*(GPN)*(A66)*(T66)*(C66)*(APN)*(CPN)*(TPN))-NH2, MAGNESIUM ION Authors: Menchise, V, De Simone, G, Tedeschi, T, Corradini, R, Sforza, S, Marchelli, R, Capasso, D, Saviano, M, Pedone, C. Deposit date: 2003-01-24 Release date: 2003-10-28 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Insights into peptide nucleic acid (PNA) structural features: The crystal structure of a D-lysine-based chiral PNA-DNA duplex Proc.Natl.Acad.Sci.USA, 100, 2003
1JRN	Orthorhombic form of Oxytricha telomeric DNA at 2.0A Descriptor: 5'-D(*GP*GP*GP*GP*TP*TP*TP*TP*GP*GP*GP*G)-3', POTASSIUM ION Authors: Haider, S.M, Parkinson, G, Neidle, S. Deposit date: 2001-08-14 Release date: 2002-06-28 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of the potassium form of an Oxytricha nova G-quadruplex. J.Mol.Biol., 320, 2002
4NFL	Crystal structure of human mitochondrial 5'(3')-deoxyribonucleotidase in complex with the inhibitor NPB-T Descriptor: 1-{2-deoxy-3,5-O-[(4-nitrophenyl)(phosphono)methylidene]-beta-D-threo-pentofuranosyl}-5-methylpyrimidine-2,4(1H,3H)-dione, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'(3')-deoxyribonucleotidase, ... Authors: Pachl, P, Rezacova, P, Brynda, J. Deposit date: 2013-10-31 Release date: 2014-09-10 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.375 Å) Cite: Conformationally constrained nucleoside phosphonic acids - potent inhibitors of human mitochondrial and cytosolic 5'(3')-nucleotidases. Org.Biomol.Chem., 12, 2014
4ZKK	The novel double-fold structure of d(GCATGCATGC) Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*AP*TP*GP*CP*AP*TP*GP*C)-3') Authors: Thirugnanasambandam, A, Karthik, S, Mandal, P.K, Gautham, N. Deposit date: 2015-04-30 Release date: 2015-10-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.801 Å) Cite: The novel double-folded structure of d(GCATGCATGC): a possible model for triplet-repeat sequences Acta Crystallogr.,Sect.D, 71, 2015
4QKK	Crystal structure of an oligonucleotide containing 5-formylcytosine Descriptor: DNA (5'-D(*CP*TP*AP*(5FC)P*GP*(5FC)P*GP*(5FC)P*GP*TP*AP*G)-3') Authors: Raiber, E.-A, Murat, P, Chirgadze, D.Y, Luisi, B.F, Balasubramanian, S. Deposit date: 2014-06-06 Release date: 2014-12-10 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: 5-Formylcytosine alters the structure of the DNA double helix. Nat.Struct.Mol.Biol., 22, 2015
1G6N	2.1 ANGSTROM STRUCTURE OF CAP-CAMP Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, CATABOLITE GENE ACTIVATOR PROTEIN Authors: Passner, J.M, Schultz, S.C, Steitz, T.A. Deposit date: 2000-11-07 Release date: 2000-12-15 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Modeling the cAMP-induced allosteric transition using the crystal structure of CAP-cAMP at 2.1 A resolution. J.Mol.Biol., 304, 2000
2V8H	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri in complex with its substrate N-carbamyl-beta- alanine Descriptor: BETA-ALANINE SYNTHASE, BICINE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-08 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8G	Crystal structure of beta-alanine synthase from Saccharomyces kluyveri in complex with the product beta-alanine Descriptor: BETA-ALANINE, BETA-ALANINE SYNTHASE, BICINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
6OD4	Human TCF4 C-terminal bHLH domain in Complex with 11-bp Oligonucleotide Containing E-box Sequence Descriptor: 1,2-ETHANEDIOL, DNA (5'-D(*TP*AP*CP*AP*CP*GP*TP*GP*TP*A)-3'), Transcription factor 4 Authors: Horton, J.R, Cheng, X, Yang, J. Deposit date: 2019-03-25 Release date: 2019-05-29 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.699 Å) Cite: Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine. Nucleic Acids Res., 47, 2019
6OD3	Human TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide Containing E-box Sequence Descriptor: 1,2-ETHANEDIOL, CHLORIDE ION, DNA (5'-D(*CP*AP*TP*AP*CP*AP*CP*GP*TP*GP*TP*AP*T)-3'), ... Authors: Horton, J.R, Cheng, X, Yang, J. Deposit date: 2019-03-25 Release date: 2019-05-29 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.494 Å) Cite: Structural basis for preferential binding of human TCF4 to DNA containing 5-carboxylcytosine. Nucleic Acids Res., 47, 2019
2V8V	Crystal structure of mutant R322A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: 2,3-DIHYDROXY-1,4-DITHIOBUTANE, BETA-ALANINE SYNTHASE, N-(AMINOCARBONYL)-BETA-ALANINE, ... Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-15 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V8D	Crystal structure of mutant E159A of beta-alanine synthase from Saccharomyces kluyveri Descriptor: BETA-ALANINE SYNTHASE, ZINC ION Authors: Lundgren, S, Andersen, B, Piskur, J, Dobritzsch, D. Deposit date: 2007-08-07 Release date: 2007-10-02 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal Structures of Yeast -Alanine Synthase Complexes Reveal the Mode of Substrate Binding and Large Scale Domain Closure Movements. J.Biol.Chem., 282, 2007
2V4R	Non-productive complex of the Y-family DNA polymerase Dpo4 with dGTP skipping the M1dG adduct to pair with the next template cytosine Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP*TP*TP*C)-3', 5'-D(*TP*CP*AP*CP*M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Stafford, J.B, Szekely, J, Rizzo, C.J, Egli, M, Guengerich, F.P, Marnett, L.J. Deposit date: 2008-09-26 Release date: 2009-06-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structural and Functional Analysis of Sulfolobus Solfataricus Y-Family DNA Polymerase Dpo4-Catalyzed Bypass of the Malondialdehyde-Deoxyguanosine Adduct. Biochemistry, 48, 2009
2W9B	Binary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA Descriptor: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOCP)-3', 5'-D(*TP*CP*AP*TP*M2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', DNA POLYMERASE IV, ... Authors: Eoff, R.L, Zhang, H, Kosekov, I.D, Rizzo, C.J, Egli, M, Guengerich, F.P. Deposit date: 2009-01-22 Release date: 2009-05-12 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.28 Å) Cite: Structure-Function Relationships in Miscoding by Sulfolobus Solfataricus DNA Polymerase Dpo4: Guanine N2,N2-Dimethyl Substitution Produces Inactive and Miscoding Polymerase Complexes. J.Biol.Chem., 284, 2009
2W8K	Y-family DNA polymerase Dpo4 bypassing N2-naphthyl-guanine adduct in syn orientation Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*N2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Zhang, H, Egli, M, Guengerich, F.P. Deposit date: 2009-01-16 Release date: 2009-01-27 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Versatility of Y-Family Sulfolobus Solfataricus DNA Polymerase Dpo4 in Translesion Synthesis Past Bulky N2-Alkylguanine Adducts. J.Biol.Chem., 284, 2009
3MBS	Crystal structure of 8mer PNA Descriptor: 1,2-ETHANEDIOL, Peptide Nucleic Acid Authors: Yeh, J.I, Pohl, E, Truan, D, He, W, Sheldrick, G.M, Achim, C. Deposit date: 2010-03-26 Release date: 2011-03-30 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.27 Å) Cite: The crystal structure of non-modified and bipyridine-modified PNA duplexes. Chemistry, 16, 2010
2V4Q	Post-insertion complex of the Y-family DNA polymerase Dpo4 with M1dG containing template DNA Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*C)-3', 5'-D(*TP*CP*AP*C M1GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Stafford, J.B, Szekely, J, Rizzo, C.J, Egli, M, Guengerich, F.P, Marnett, L.J. Deposit date: 2008-09-26 Release date: 2009-06-16 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structural and Functional Analysis of Sulfolobus Solfataricus Y-Family DNA Polymerase Dpo4-Catalyzed Bypass of the Malondialdehyde-Deoxyguanosine Adduct. Biochemistry, 48, 2009
2W9A	Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dGTP Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*CP*DOC)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP *CP*TP*TP*CP*CP*CP*CP*C)-3', ... Authors: Eoff, R.L, Zhang, H, Kosekov, I.D, Rizzo, C.J, Egli, M, Guengerich, F.P. Deposit date: 2009-01-22 Release date: 2009-05-12 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure-Function Relationships in Miscoding by Sulfolobus Solfataricus DNA Polymerase Dpo4: Guanine N2,N2-Dimethyl Substitution Produces Inactive and Miscoding Polymerase Complexes. J.Biol.Chem., 284, 2009
2W9C	Ternary complex of Dpo4 bound to N2,N2-dimethyl-deoxyguanosine modified DNA with incoming dTTP Descriptor: 5'-D(*GP*GP*GP*GP*GP*AP*AP*GP*GP*AP *TP*TP*DOCP)-3', 5'-D(*TP*CP*AP*CP*O2GP*GP*AP*AP*TP*CP*CP *TP*TP*CP*CP*CP*CP*C)-3', DNA POLYMERASE IV, ... Authors: Eoff, R.L, Zhang, H, Kosekov, I.D, Rizzo, C.J, Egli, M, Guengerich, F.P. Deposit date: 2009-01-22 Release date: 2009-05-12 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure-Function Relationships in Miscoding by Sulfolobus Solfataricus DNA Polymerase Dpo4: Guanine N2,N2-Dimethyl Substitution Produces Inactive and Miscoding Polymerase Complexes. J.Biol.Chem., 284, 2009

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