PDB: 1466 resultsInfo pagesStatus searchChemie searchBIRD

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7OOJ	Structure of D-Thr53 Ubiquitin Descriptor: CADMIUM ION, Ubiquitin Authors: Becker, S. Deposit date: 2021-05-27 Release date: 2022-05-18 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.6 Å) Cite: A litmus test for classifying recognition mechanisms of transiently binding proteins. Nat Commun, 13, 2022
3H7P	Crystal structure of K63-linked di-ubiquitin Descriptor: CADMIUM ION, Ubiquitin Authors: Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. Deposit date: 2009-04-28 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins, 77, 2009
3H1U	Structure of ubiquitin in complex with Cd ions Descriptor: CADMIUM ION, Ubiquitin Authors: Qureshi, I.A, Ferron, F, Cheung, P, Lescar, J. Deposit date: 2009-04-14 Release date: 2009-05-05 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (3 Å) Cite: Crystallographic structure of ubiquitin in complex with cadmium ions BMC RES NOTES, 2, 2009
3H7S	Crystal structures of K63-linked di- and tri-ubiquitin reveal a highly extended chain architecture Descriptor: Ubiquitin, ZINC ION Authors: Weeks, S.D, Grasty, K.C, Hernandez-Cuebas, L, Loll, P.J. Deposit date: 2009-04-28 Release date: 2009-09-22 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Crystal structures of Lys-63-linked tri- and di-ubiquitin reveal a highly extended chain architecture. Proteins, 77, 2009
7W54	Crystal structure of a bacterial OTU DUB with Ub-PA Descriptor: Lpg2248, Polyubiquitin-B, prop-2-en-1-amine Authors: Zhen, X, Ouyang, S.Y. Deposit date: 2021-11-29 Release date: 2022-08-24 Last modified: 2023-04-05 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Structural basis for the dual catalytic activity of the Legionella pneumophila ovarian tumor (OTU) domain deubiquitinase LotA. J.Biol.Chem., 298, 2022
6P81	Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin Descriptor: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE, ACETATE ION, CALCIUM ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2019-06-06 Release date: 2019-07-10 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structure of DNA polymerase III, beta subunit/ beta sliding clamp from Klebsiella pneumoniae, expressed with an N-terminal His-Smt3 fusion tag, in complex with Griselimycin to be published
7M4N	Crystal structure of RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, SULFATE ION, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4M	Crystal structure of RBR E3 ligase RNF216 with ubiquitin Descriptor: E3 ubiquitin-protein ligase RNF216, GLYCEROL, Ubiquitin, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
7M4O	Crystal structure of phosphorylated RBR E3 ligase RNF216 in complex with K63-linked di-ubiquitin Descriptor: 2-(2-METHOXYETHOXY)ETHANOL, E3 ubiquitin-protein ligase RNF216, GLYCEROL, ... Authors: Cotton, T.R, Lechtenberg, B.C. Deposit date: 2021-03-21 Release date: 2022-01-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of K63-ubiquitin chain formation by the Gordon-Holmes syndrome RBR E3 ubiquitin ligase RNF216. Mol.Cell, 82, 2022
6QK9	A dimeric ubiquitin formed by a single amino acid substitution Descriptor: Polyubiquitin-B Authors: Gabrielsen, M, Kowalczyk, D, Buetow, L, Huang, D.T. Deposit date: 2019-01-28 Release date: 2019-07-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.231 Å) Cite: Identification and Characterization of Mutations in Ubiquitin Required for Non-covalent Dimer Formation. Structure, 27, 2019
6QF8	Solution NMR ensemble for human ubiquitin at 298K compiled using the CoMAND method Descriptor: Polyubiquitin-B Authors: ElGamacy, M, Truffault, V, Zhu, H, Coles, M. Deposit date: 2019-01-09 Release date: 2019-04-10 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mapping Local Conformational Landscapes of Proteins in Solution. Structure, 27, 2019
6OQ1	Crystal Structure of Branched K11/K48-Linked Tri-Ubiquitin Descriptor: Ubiquitin Authors: Boughton, A.J, Fushman, D. Deposit date: 2019-04-25 Release date: 2019-10-23 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
3HM3	The Structure and conformation of Lys-63 linked tetra-ubiquitin Descriptor: Ubiquitin, ZINC ION Authors: Datta, A.B, Hura, G.L, Wolberger, C. Deposit date: 2009-05-28 Release date: 2009-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.96 Å) Cite: The structure and conformation of Lys63-linked tetraubiquitin. J.Mol.Biol., 392, 2009
7NPO	Branched K48-K63-Ub3 Descriptor: GLYCEROL, Polyubiquitin-B Authors: Lange, S.M, Kwasna, D, Kulathu, Y. Deposit date: 2021-02-27 Release date: 2022-08-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Branched Lys48-Lys63-linked triubiquitin To be published
7NBB	Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 Descriptor: CHLORIDE ION, GLYCEROL, MAGNESIUM ION, ... Authors: Lange, S.M, Kulathu, Y. Deposit date: 2021-01-26 Release date: 2022-08-10 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Branched Lys48- and Lys63-linked tri-ubiquitin (K48-K63-Ub3) in complex with synthetic nanobody NbSL3 To Be Published
6OQ2	NMR Structure of Branched K11/K48-Linked Tri-Ubiquitin Descriptor: Ubiquitin Authors: Boughton, A.J, Fushman, D. Deposit date: 2019-04-25 Release date: 2019-10-23 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1. Structure, 28, 2020
8DMS	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose Descriptor: CITRATE ANION, METHYL 4-AMINOBUTANOATE, MavL, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester soaked with ADP-ribose To Be Published
8DMQ	Crystal structure of Legionella pneumophila macrodomain MavL in complex with ubiquitin vinyl methyl ester Descriptor: 1,2-ETHANEDIOL, CITRATE ANION, METHYL 4-AMINOBUTANOATE, ... Authors: Zhang, Z, Das, C. Deposit date: 2022-07-08 Release date: 2023-07-12 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.195 Å) Cite: Structure of Legionella pneumophila macrodomain effector MavL in complex with ubiquitin vinyl methyl ester To Be Published
8E7O	CRYSTAL STRUCTURE OF LYS48-LINKED TETRAUBIQUITIN Descriptor: SULFATE ION, Ubiquitin Authors: Lemma, B.E, Fushman, D. Deposit date: 2022-08-24 Release date: 2022-11-02 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
8DMB	Structure of Desulfovirgula thermocuniculi IsrB (DtIsrB) in complex with omega RNA and target DNA Descriptor: MAGNESIUM ION, Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein, non-target DNA, ... Authors: Seiichi, H, Kappel, K, Zhang, F. Deposit date: 2022-07-08 Release date: 2022-10-19 Last modified: 2024-06-12 Method: ELECTRON MICROSCOPY (3.1 Å) Cite: Structure of the OMEGA nickase IsrB in complex with omega RNA and target DNA. Nature, 610, 2022
8CMR	Linear specific OTU-type DUB SnOTU from the pathogen S. negenvensis in complex with linear di-ubiquitin Descriptor: OTU domain-containing protein, Polyubiquitin-B Authors: Uthoff, M, Hermanns, T, Boll, V, Hofmann, K, Baumann, U. Deposit date: 2023-02-21 Release date: 2023-11-22 Method: X-RAY DIFFRACTION (2.24 Å) Cite: Functional and structural diversity in deubiquitinases of the Chlamydia-like bacterium Simkania negevensis. Nat Commun, 14, 2023
8F1F	Structure of K48-linked tri-ubiquitin in complex with cyclic peptide Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, GLYCEROL, Non-proteinogenic cyclic peptide (inhibitor), ... Authors: Lubkowski, J, Fushman, D, Lemma, B. Deposit date: 2022-11-05 Release date: 2023-11-01 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation. Nat Commun, 14, 2023
5XPK	Crystal structure of ubiquitin-k6mimic Descriptor: D-ubiquitin, Ubiquitin Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-06-03 Release date: 2017-07-19 Method: X-RAY DIFFRACTION (2.274 Å) Cite: Structure of ubiquitin-k6mimic at 2.27 Angstroms resolution. To Be Published
5XIS	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Descriptor: E3 ubiquitin-protein ligase RNF168, MAGNESIUM ION, Ubiquitin-40S ribosomal protein S27a, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5X3M	crystal structure of p-Ub-S65-NH2 Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-05 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.818 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution To Be Published

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