PDB: 9760 resultsInfo pagesStatus searchChemie searchBIRD

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6LM3	Neutralization mechanism of a monoclonal antibody targeting a porcine circovirus type 2 Cap protein conformational epitope Descriptor: Capsid protein Authors: Sun, Z, Huang, L, Xia, D, Wei, Y, Sun, E, Zhu, H, Bian, H, Wu, H, Feng, L, Wang, J, Liu, C. Deposit date: 2019-12-24 Release date: 2020-02-12 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (6.7 Å) Cite: Neutralization Mechanism of a Monoclonal Antibody Targeting a Porcine Circovirus Type 2 Cap Protein Conformational Epitope. J.Virol., 94, 2020
6DB7	Crystal structure of anti-HIV-1 V3 Fab 1334 in complex with a HIV-1 gp120 V3 peptide from MN strain Descriptor: GLYCEROL, HIV-1 gp120 V3 peptide from MN strain, Human monoclonal anti-HIV-1 gp120 V3 antibody 1334 Fab heavy chain, ... Authors: Chan, K.-W, Kong, X.-P. Deposit date: 2018-05-02 Release date: 2018-07-11 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2.213 Å) Cite: Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection. J. Virol., 92, 2018
3UJJ	Crystal structure of anti-HIV-1 V3 Fab 4025 in complex with Con A peptide Descriptor: ACETATE ION, Fab region of the heavy chain of anti-HIV-1 V3 monoclonal antibody 4025, GLYCEROL, ... Authors: Kong, X.P, Sampson, J. Deposit date: 2011-11-07 Release date: 2011-12-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Human Anti-V3 HIV-1 Monoclonal Antibodies Encoded by the VH5-51/VL Lambda Genes Define a Conserved Antigenic Structure. Plos One, 6, 2011
4YJZ	Human antibody H2526 in complex with influenza hemagglutinin H1 Solomon Islands/03/2006 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Hemagglutinin, scFv H2526 Authors: Schmidt, A.G, Harrison, S.C. Deposit date: 2015-03-03 Release date: 2015-05-27 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.72 Å) Cite: Viral receptor-binding site antibodies with diverse germline origins. Cell, 161, 2015
6DB6	Crystal structure of anti-HIV-1 V3 Fab 311-11D in complex with a HIV-1 gp120 V3 peptide from MN strain Descriptor: HIV-1 gp120 V3 peptide from MN strain, Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody 311-11D Fab light chain, ... Authors: Chan, K.-W, Kong, X.-P. Deposit date: 2018-05-02 Release date: 2018-07-11 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (1.978 Å) Cite: Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection. J. Virol., 92, 2018
6DB5	Crystal structure of anti-HIV-1 V3 Fab TA6 in complex with a HIV-1 gp120 V3 peptide from NY5 strain Descriptor: HIV-1 gp120 V3 peptide from NY5 strain, Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab heavy chain, Human monoclonal anti-HIV-1 gp120 V3 antibody TA6 Fab light chain Authors: Chan, K.-W, Kong, X.-P. Deposit date: 2018-05-02 Release date: 2018-07-11 Last modified: 2019-12-18 Method: X-RAY DIFFRACTION (2.599 Å) Cite: Structural Comparison of Human Anti-HIV-1 gp120 V3 Monoclonal Antibodies of the Same Gene Usage Induced by Vaccination and Chronic Infection. J. Virol., 92, 2018
6II9	Crystal structure of H7 hemagglutinin from A/Anhui/1/2013 in complex with a human neutralizing antibody L3A-44 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of L3A-44 Fab, Hemagglutinin, ... Authors: Jiang, H.H, Shi, Y, Qi, J, Gao, G.F. Deposit date: 2018-10-03 Release date: 2018-10-24 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Structure-function analysis of neutralizing antibodies to H7N9 influenza from naturally infected humans. Nat Microbiol, 4, 2019
6II8	Crystal structure of H7 hemagglutinin from A/Anhui/1/2013 in complex with a human neutralizing antibody L4B-18 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Heavy chain of L4B-18 Fab, Hemagglutinin, ... Authors: Jiang, H.H, Shi, Y, Qi, J, Gao, G.F. Deposit date: 2018-10-03 Release date: 2018-10-24 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3.32 Å) Cite: Structure-function analysis of neutralizing antibodies to H7N9 influenza from naturally infected humans. Nat Microbiol, 4, 2019
5C0N	Development of a monoclonal antibody targeting secreted aP2 to treat diabetes and fatty liver disease Descriptor: Fab CA33 Heavy chain, Fab CA33 light chain, Fatty acid-binding protein, ... Authors: Doyle, C. Deposit date: 2015-06-12 Release date: 2015-06-24 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3 Å) Cite: Development of a therapeutic monoclonal antibody that targets secreted fatty acid-binding protein aP2 to treat type 2 diabetes. Sci Transl Med, 7, 2015
4JO1	Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 JR-FL gp120 Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ... Authors: Pan, R.M, Kong, X.P. Deposit date: 2013-03-16 Release date: 2013-07-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.033 Å) Cite: Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans. J.Virol., 87, 2013
1IGF	CRYSTAL STRUCTURES OF AN ANTIBODY TO A PEPTIDE AND ITS COMPLEX WITH PEPTIDE ANTIGEN AT 2.8 ANGSTROMS Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, IGG1-KAPPA B13I2 FAB (HEAVY CHAIN), IGG1-KAPPA B13I2 FAB (LIGHT CHAIN) Authors: Stanfield, R.L, Wilson, I.A. Deposit date: 1991-03-21 Release date: 1992-04-15 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of an antibody to a peptide and its complex with peptide antigen at 2.8 A. Science, 248, 1990
6CA7	Crystal structure of PCT64_13C, a strain specific anti-HIV antibody Descriptor: PCT64_13C heavy chain, PCT64_13C light chain Authors: Murrell, S, Wilson, I.A. Deposit date: 2018-01-29 Release date: 2018-06-27 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.643 Å) Cite: Co-evolution of HIV Envelope and Apex-Targeting Neutralizing Antibody Lineage Provides Benchmarks for Vaccine Design. Cell Rep, 23, 2018
3RKI	Structural basis for immunization with post-fusion RSV F to elicit high neutralizing antibody titers Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Fusion glycoprotein F0 Authors: Swanson, K.A, Settembre, E.C, Shaw, C.A, Dey, A.K, Rappuoli, R, Mandl, C.W, Dormitzer, P.D, Carfi, A. Deposit date: 2011-04-18 Release date: 2011-05-18 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural basis for immunization with postfusion respiratory syncytial virus fusion F glycoprotein (RSV F) to elicit high neutralizing antibody titers. Proc.Natl.Acad.Sci.USA, 108, 2011
8JLX	CCHFV envelope protein Gc in complex with Gc13 Descriptor: Glycoprotein C,CCHFV Gc fusion loops, Mouse antibody Gc13 heavy chain, Mouse antibody Gc13 light chain Authors: Chong, T, Cao, S. Deposit date: 2023-06-03 Release date: 2024-01-24 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Neutralizing monoclonal antibodies against the Gc fusion loop region of Crimean-Congo hemorrhagic fever virus. Plos Pathog., 20, 2024
8JLW	CCHFV envelope protein Gc in complex with Gc8 Descriptor: Glycoprotein C,CCHFV envelope protein Gc fusion loops, Mouse antibody Gc8 heavy chain, Mouse antibody Gc8 light chain Authors: Chong, T, Cao, S. Deposit date: 2023-06-03 Release date: 2024-01-24 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (3 Å) Cite: Neutralizing monoclonal antibodies against the Gc fusion loop region of Crimean-Congo hemorrhagic fever virus. Plos Pathog., 20, 2024
6DLA	Crystal structures of an influenza A hemagglutinin antibody Fab CH65:7969d2 Descriptor: CH65:7969d2 Fab heavy chain, CH65:7969d2 Fab light chain, SULFATE ION Authors: Dong, J, Crowe, J.E, Finn, J.A. Deposit date: 2018-05-31 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.004 Å) Cite: Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring. Structure, 28, 2020
6WXL	Cryo-EM structure of the VRC315 clinical trial, vaccine-elicited, human antibody 1D12 in complex with an H7 SH13 HA trimer Descriptor: 1D12 Light chain, 1D21 Heavy chain, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... Authors: Gorman, J, Kwong, P.D. Deposit date: 2020-05-11 Release date: 2021-06-09 Last modified: 2022-06-22 Method: ELECTRON MICROSCOPY (2.76 Å) Cite: Structure of an influenza group 2-neutralizing antibody targeting the hemagglutinin stem supersite. Structure, 2022
6DL8	Crystal Structure of an influenza A hemagglutinin antibody Fab variant CH67:1203d4 chimera Descriptor: CH67:1203d4 FAB light chain, Ch67:1203d4 FAB heavy chain Authors: Dong, J, Finn, J.A, Crowe, J.E. Deposit date: 2018-05-31 Release date: 2019-06-05 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.805 Å) Cite: Identification of Structurally Related Antibodies in Antibody Sequence Databases Using Rosetta-Derived Position-Specific Scoring. Structure, 28, 2020
7R6W	SARS-CoV-2 spike receptor-binding domain (RBD) in complex with S2X35 Fab and S309 Fab Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CHLORIDE ION, GLYCEROL, ... Authors: Snell, G, Czudnochowski, N, Hernandez, P, Nix, J.C, Croll, T.I, Corti, D, Cameroni, E, Pinto, D, Beltramello, M. Deposit date: 2021-06-23 Release date: 2021-07-21 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.83 Å) Cite: SARS-CoV-2 RBD antibodies that maximize breadth and resistance to escape. Nature, 597, 2021
8GKL	Crystal Structure of the Humanized MUC16 Specific Antibody huAR9.6 Descriptor: MUC16 antibody AR9.6 Fab heavy chain, MUC16 antibody AR9.6 Fab light chain, Mucin-16 Authors: Brooks, C.L, Aguilar, E.N. Deposit date: 2023-03-19 Release date: 2024-03-20 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal Structure of the MUC16 Specific Antibody AR9.6 To Be Published
5ZUF	Fit R10 Fab coordinates into the cryo-EM of EV71 in complex with A9 Descriptor: Capsid protein VP1, R10 ANTIBODY HEAVY CHAIN, R10 ANTIBODY LIGHT CHAIN, ... Authors: Wang, X, Zhu, L, Wang, N. Deposit date: 2018-05-07 Release date: 2019-12-25 Last modified: 2021-01-06 Method: ELECTRON MICROSCOPY (6.8 Å) Cite: Neutralization Mechanisms of Two Highly Potent Antibodies against Human Enterovirus 71. Mbio, 9, 2018
6XPX	Human antibody S1V2-51 in complex with the influenza hemagglutinin head domain of A/Aichi/2/1968 (X-31)(H3N2) Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BICINE, GLYCEROL, ... Authors: McCarthy, K.R, Harrison, S.C. Deposit date: 2020-07-09 Release date: 2021-05-19 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.598 Å) Cite: A Prevalent Focused Human Antibody Response to the Influenza Virus Hemagglutinin Head Interface. Mbio, 12, 2021
3N85	Crystallographic trimer of HER2 extracellular regions in complex with tryptophan-rich antibody fragment Descriptor: CHLORIDE ION, Fab37 Heavy Chain, Fab37 Light Chain, ... Authors: Eigenbrot, C. Deposit date: 2010-05-27 Release date: 2010-07-28 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structure of the complex between HER2 and an antibody paratope formed by side chains from tryptophan and serine. J.Mol.Biol., 402, 2010
6N8D	Crystal structure of GII.4 2002 norovirus P domain in complex with neutralizing human antibody A1431 Descriptor: A1431 Fab heavy chain, A1431 Fab light chain, Major capsid protein Authors: Changela, A, Verardi, R, Kwong, P.D. Deposit date: 2018-11-29 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Sera Antibody Repertoire Analyses Reveal Mechanisms of Broad and Pandemic Strain Neutralizing Responses after Human Norovirus Vaccination. Immunity, 50, 2019
8JZA	Crystal structure of single domain antibody kt75 of human Thyroglobulin Descriptor: ACETATE ION, POTASSIUM ION, single domain antibody kt75 of human Thyroglobulin Authors: Mistry, H, Kumarasamy, J, Kumari, S, Kulkarni, S.P, Gupta, G.D. Deposit date: 2023-07-04 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal structure of single domain antibody kt75 of human Thyroglobulin To Be Published

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