PDB: 9904 resultsInfo pagesStatus searchChemie searchBIRD

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6PZY	CryoEM derived model of NA-73 Fab in complex with N9 Shanghai2 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, NA-73 fragment antibody heavy chain, ... Authors: Ward, A.B, Turner, H.L, Zhu, X. Deposit date: 2019-08-01 Release date: 2019-12-04 Last modified: 2023-04-05 Method: ELECTRON MICROSCOPY (3.17 Å) Cite: Structural Basis of Protection against H7N9 Influenza Virus by Human Anti-N9 Neuraminidase Antibodies. Cell Host Microbe, 26, 2019
6XKP	Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody CV07-270 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CV07-270 Heavy Chain, CV07-270 Light Chain, ... Authors: Liu, H, Yuan, M, Zhu, X, Wu, N.C, Wilson, I.A. Deposit date: 2020-06-26 Release date: 2020-10-14 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.72 Å) Cite: A Therapeutic Non-self-reactive SARS-CoV-2 Antibody Protects from Lung Pathology in a COVID-19 Hamster Model. Cell, 183, 2020
3HI6	Crystal structure of intermediate affinity I domain of integrin LFA-1 with the Fab fragment of its antibody AL-57 Descriptor: Heavy chain of Fab fragment of AL-57 against alpha L I domain, Integrin alpha-L, MANGANESE (II) ION, ... Authors: Zhang, H, Wang, J. Deposit date: 2009-05-19 Release date: 2009-09-22 Last modified: 2021-10-13 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structural basis of activation-dependent binding of ligand-mimetic antibody AL-57 to integrin LFA-1. Proc.Natl.Acad.Sci.USA, 106, 2009
4Z8F	Fab structure of antibody S1-15 in complex with ssDNA DNA, 5'-p5(dT)p-3' Descriptor: 5'-D(P*TP*TP*TP*TP*T)-3', S1-15 Fab (IgG2b kappa) light chain, S1-15 Fab (IgG2b) heavy chain Authors: Haji-Ghassemi, O, Evans, S.V. Deposit date: 2015-04-08 Release date: 2015-06-24 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Structural Basis for Antibody Recognition of Lipid A: INSIGHTS TO POLYSPECIFICITY TOWARD SINGLE-STRANDED DNA. J.Biol.Chem., 290, 2015
7F62	Cryo-EM structure of SARS-CoV-2 spike in complex with a neutralizing antibody chAb-25 (Focused refinement of S-RBD and chAb-25 region) Descriptor: RBD-chAb-25, Heavy chain, Light chain, ... Authors: Yang, T.J, Yu, P.Y, Wu, H.C, Hsu, S.T.D. Deposit date: 2021-06-24 Release date: 2021-08-04 Last modified: 2022-02-16 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structure-guided antibody cocktail for prevention and treatment of COVID-19. Plos Pathog., 17, 2021
5WB9	Crystal structure of CD4 binding site antibody N60P23 in complex with HIV-1 clade A/E strain 93TH057 gp120 core Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 3[N-MORPHOLINO]PROPANE SULFONIC ACID, ... Authors: Gohain, N, Tolbert, W, Pazgier, M. Deposit date: 2017-06-28 Release date: 2018-05-23 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Identification of Near-Pan-neutralizing Antibodies against HIV-1 by Deconvolution of Plasma Humoral Responses. Cell, 173, 2018
7MDU	BG505 SOSIP MD39 in complex with the monoclonal antibodies Rh.33104 mAb.1 and RM20A3 Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, RM20A3 mAb Heavy Chain, ... Authors: Antanasijevic, A, Ward, A.B. Deposit date: 2021-04-06 Release date: 2022-01-26 Last modified: 2022-02-02 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: From structure to sequence: Antibody discovery using cryoEM. Sci Adv, 8, 2022
5I1C	CRYSTAL STRUCTURE OF HUMAN GERMLINE ANTIBODY IGHV3-23/IGKV3-20 Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, FAB HEAVY CHAIN, ... Authors: Teplyakov, A, Obmolova, G, Malia, T, Luo, J, Gilliland, G. Deposit date: 2016-02-05 Release date: 2016-06-08 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural diversity in a human antibody germline library. Mabs, 8, 2016
7ZWF	Pfs48/45 bound to scFv fragment of monoclonal antibody 32F3 Descriptor: 32F3scFv, Gametocyte surface protein P45/48, alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose Authors: Ko, K.T, Lennartz, F.L, Higgins, M.K. Deposit date: 2022-05-19 Release date: 2022-06-22 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.132 Å) Cite: Structure of the malaria vaccine candidate Pfs48/45 and its recognition by transmission blocking antibodies. Nat Commun, 13, 2022
6EHY	scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery Descriptor: scFv antibody fragment Authors: Hargreaves, D. Deposit date: 2017-09-15 Release date: 2017-11-08 Last modified: 2019-10-16 Method: X-RAY DIFFRACTION (2.25 Å) Cite: scFv AbVance: increasing our knowledge of antibody structural space to enable faster and better decision making in drug discovery To Be Published
3NTC	Crystal structure of KD-247 Fab, an anti-V3 antibody that inhibits HIV-1 Entry Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Fab heavy chain, ... Authors: Sarafianos, S.G, Kirby, K.A. Deposit date: 2010-07-03 Release date: 2010-08-25 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Structural basis of clade-specific HIV-1 neutralization by humanized anti-V3 monoclonal antibody KD-247. Faseb J., 29, 2015
8IPC	The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184 Descriptor: Putative zinc metalloprotease aq_1964, The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1, The recombinantly-expressed light chain of the monoclonal antibody NZ-1 Authors: Adachi, Y, Nogi, T. Deposit date: 2023-03-14 Release date: 2024-01-31 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Recombinant production of antibody antigen-binding fragments with an N-terminal human growth hormone tag in mammalian cells. Protein Expr.Purif., 208-209, 2023
4JO3	Crystal structure of rabbit mAb R20 Fab in complex with V3 C-terminus of HIV-1 Consensus B gp120 Descriptor: SULFATE ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R20 heavy chain, ... Authors: Pan, R.M, Kong, X.P. Deposit date: 2013-03-16 Release date: 2013-07-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans. J.Virol., 87, 2013
6Z7Z	Porcine insulin in complex with the analytical antibody OXI-005 Fab Descriptor: Insulin, MAGNESIUM ION, OXI-005 Fab Heavy chain, ... Authors: Johansson, E. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Insulin binding to the analytical antibody sandwich pair OXI-005 and HUI-018: Epitope mapping and binding properties. Protein Sci., 30, 2021
4JO4	Crystal structure of rabbit mAb R20 Fab Descriptor: PENTAETHYLENE GLYCOL, SULFATE ION, monoclonal anti-HIV-1 gp120 V3 antibody R20 heavy chain, ... Authors: Pan, R.M, Kong, X.P. Deposit date: 2013-03-16 Release date: 2013-07-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.27 Å) Cite: Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans. J.Virol., 87, 2013
6Z7W	Human insulin in complex with the analytical antibody HUI-018 Fab Descriptor: HUI-018 Fab Heavy Chain, Insulin, MAb 6H10 light chain Authors: Johansson, E. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Insulin binding to the analytical antibody sandwich pair OXI-005 and HUI-018: Epitope mapping and binding properties. Protein Sci., 30, 2021
1AJ7	IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION OF AN ESTEROLYTIC ANTIBODY Descriptor: 5-(PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID, IMMUNOGLOBULIN 48G7 FAB (HEAVY CHAIN), IMMUNOGLOBULIN 48G7 FAB (LIGHT CHAIN) Authors: Wedemayer, G.J, Wang, L.H, Patten, P.A, Schultz, P.G, Stevens, R.C. Deposit date: 1997-05-15 Release date: 1997-11-12 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural insights into the evolution of an antibody combining site. Science, 276, 1997
6Z7X	Insulin analytical antibody OXI-005 Fab Descriptor: OXI-005 Fab Heavy chain, OXI-005 Fab Light chain Authors: Johansson, E. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Insulin binding to the analytical antibody sandwich pair OXI-005 and HUI-018: Epitope mapping and binding properties. Protein Sci., 30, 2021
6Z7Y	Human insulin in complex with the analytical antibody OXI-005 Fab Descriptor: Insulin, OXI-005 Fab Heavy chain, OXI-005 Fab Light chain Authors: Johansson, E. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Insulin binding to the analytical antibody sandwich pair OXI-005 and HUI-018: Epitope mapping and binding properties. Protein Sci., 30, 2021
4JO2	Crystal structure of rabbit mAb R56 Fab in complex with V3 crown of HIV-1 Consensus A gp120 Descriptor: CALCIUM ION, gp120, monoclonal anti-HIV-1 gp120 V3 antibody R56 heavy chain, ... Authors: Pan, R.M, Kong, X.P. Deposit date: 2013-03-16 Release date: 2013-07-31 Last modified: 2017-11-15 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Rabbit Anti-HIV-1 Monoclonal Antibodies Raised by Immunization Can Mimic the Antigen-Binding Modes of Antibodies Derived from HIV-1-Infected Humans. J.Virol., 87, 2013
1L7I	Crystal Structure of the anti-ErbB2 Fab2C4 Descriptor: SULFATE ION, chimera of Fab2C4: "humanized" murine monoclonal antibody Authors: Vajdos, F.F, Adams, C.W, Breece, T.N, Presta, L.G, de Vos, A.M, Sidhu, S.S. Deposit date: 2002-03-15 Release date: 2002-07-10 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Comprehensive functional maps of the antigen-binding site of an anti-ErbB2 antibody obtained with shotgun scanning mutagenesis. J.Mol.Biol., 320, 2002
6I9I	Rift valley fever virus Gn in complex with a neutralizing antibody fragment Descriptor: Glycoprotein, RV-Gn1 Heavy chain, RV-Gn1 Light chain Authors: Allen, E.R, Bowden, T.A. Deposit date: 2018-11-23 Release date: 2018-12-26 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.98 Å) Cite: A Protective Monoclonal Antibody Targets a Site of Vulnerability on the Surface of Rift Valley Fever Virus. Cell Rep, 25, 2018
1OCW	Free conformation Ab2 of the IgE SPE-7 Descriptor: IMMUNOGLOBULIN E Authors: James, L.C, Roversi, P, Tawfik, D. Deposit date: 2003-02-11 Release date: 2004-02-05 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Antibody Multispecificity Mediated by Conformational Diversity Science, 299, 2003
3OJD	Anti-Indolicidin monoclonal antibody V2D2 (Fab fragment) Descriptor: Fab V2D2 Authors: Lomash, S, Salunke, D.M. Deposit date: 2010-08-22 Release date: 2010-09-01 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2 Å) Cite: An antibody as surrogate receptor reveals determinants of activity of an innate immune peptide antibiotic J.Biol.Chem., 285, 2010
4K23	Structure of anti-uPAR Fab ATN-658 Descriptor: anti-uPAR antibody, heavy chain, light chain Authors: Yuan, C, Huang, M, Chen, L. Deposit date: 2013-04-08 Release date: 2014-02-26 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Identification of a New Epitope in uPAR as a Target for the Cancer Therapeutic Monoclonal Antibody ATN-658, a Structural Homolog of the uPAR Binding Integrin CD11b ( alpha M) Plos One, 9, 2014

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